Array 1 28687-30957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVL010000004.1 Lactobacillus delbrueckii subsp. lactis strain FAM 12103 FAM12103-i1-1_scf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 28687 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 28755 33 100.0 35 ................................. GTTGAAGCAAACAATATCAATGCACAAAAGACCAG 28823 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 28891 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 28959 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 29028 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 29098 33 100.0 37 ................................. ACAGTATCAAGGTCGTGGTTGGACACACACGTTTGCA 29168 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 29236 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 29302 33 100.0 34 ................................. AACGGAAGCAACCCGATACTGCCAGTAACGTCTT 29369 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 29438 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 29508 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 29574 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 29644 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 29712 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 29780 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 29847 33 100.0 35 ................................. TTCTGGCCACCTTGGCCAGCATGGATAACGGCGGT 29915 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 29981 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 30051 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 30119 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 30186 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 30252 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 30320 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 30387 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 30455 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 30523 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 30590 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 30658 33 100.0 34 ................................. TTGCCCTTGATCGTCATGACCTTGGCCGTCTTCC 30725 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 30792 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 30858 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 30925 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 34 33 99.4 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5340-8496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVL010000028.1 Lactobacillus delbrueckii subsp. lactis strain FAM 12103 FAM12103-i1-1_scf28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 5340 35 75.0 39 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA C [5353] 5415 35 80.6 35 C..-.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [5444,5447] 5487 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 5559 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 5631 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 5710 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 5783 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 5856 36 100.0 41 .................................... TTAGCTGATGCTGCTGAAAAAATTGCAAAGGATAAACAATG 5933 36 100.0 39 .................................... CAGTACTACTGGACGGTGGAAGACGGCCAGGTAGTTGAA 6008 36 100.0 37 .................................... TCTTCTCTGTGATTGGCTTTATTGCCGGCCGCTTTCC 6081 36 100.0 41 .................................... GAAAATAAGGAATTGGTATTGTTGGCGGAAGAAGACCGGGA 6158 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 6232 36 100.0 37 .................................... GACAGAAAAAAACAAAAAGTTTTAAAGTTTTGCTTTT 6305 36 100.0 35 .................................... TGTGAGGACGATTGGCCGGCTATGGAATGGTTTAT 6376 36 100.0 37 .................................... AATTTTTGCTATTATTAAATATGTGCTGAGGCACGAG 6449 36 100.0 41 .................................... AACGGAGTGACATAGATAAGTGGGCCAAACAGTTTAAGGAG 6526 36 100.0 41 .................................... TTAGCTGATGCTGCTGAAAAAATTGCAAAGGATAAACAATG 6603 36 100.0 39 .................................... CAGTACTACTGGACGGTGGAAGACGGCCAGGTAGTTGAA 6678 36 100.0 37 .................................... TCTTCTCTGTGATTGGCTTTATTGCCGGCCGCTTTCC 6751 36 100.0 41 .................................... GGAGCTTCTGGCCGAAGACGAATTTTGGGATGAGTACTCCA 6828 36 100.0 42 .................................... GAGATCAAGAAGTTTATCACCATGAAAGAGTTCACTTACAGA 6906 36 100.0 40 .................................... AGAAAGAGAGAAAAGAAAATGAATGAATTAGTGATTTTAA 6982 36 100.0 38 .................................... ATGGAAGAAATGGAATACACACCAATGAATTACATCAT 7056 36 100.0 35 .................................... ACAGAAAAACGATGAACAAGTCCGCGTCTAGGTCA 7127 36 100.0 34 .................................... AGAACTTGAAGACGTAATTAGAAAAATCAAGAAG 7197 36 100.0 35 .................................... ATGCAAGGTTTTAAAATTGCTCAAAAGATTGGCTA 7268 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 7341 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 7418 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 7493 36 100.0 37 .................................... AAAATAAAAAATATTTTTTTAAAAAATAGTAGACATG 7566 36 100.0 36 .................................... ACAAGGAAAACTATGATTTGTACCTTAACGGGTGGC 7638 36 100.0 40 .................................... AAAAAGCGCAATGAGTAAATTCATTTGGGATGGTTTCTGT 7714 36 100.0 39 .................................... TTGACGTTTCCAACTTTTACTAGAAAAAACGGGCTTAAA 7789 36 100.0 36 .................................... TTACAAAGTTAAGAAATGAGGTATTAAAAAATGGAA 7861 36 100.0 40 .................................... CTATGAACCAAGTTTCAAATAGAAAATAATTTTTGTAAAA 7937 36 100.0 40 .................................... TTGATCCGTCAATATGAAGAGCTCGTAGAGGAAGAACTCA 8013 36 100.0 39 .................................... GATGCCAAAGATCAGCATCAAGGCGGCTCGCGTTAATGC 8088 36 100.0 38 .................................... GCGATCAAGAGAGAATGGGAGGATGAAAATGCAGCACA 8162 36 100.0 44 .................................... CTAATAGATCTTGCAATTGAAGATAGAGCGCAAGGCAATTATTT 8242 36 100.0 37 .................................... CCAGCCGCGAATTGTCAACAGAAATATGTGAGTTTGT 8315 36 100.0 35 .................................... CCTAAGAAAATAAAAAAGGAGTAACAAAAAATGCA 8386 36 100.0 39 .................................... GGAAAACCTTGTAAACTATGCGAAAAGCTATGCGGAGCA 8461 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 43 36 98.8 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //