Array 1 20256-21426 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000131.1 Paenibacillus sp. 1-18 S118_contig00479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 20256 32 100.0 34 ................................ TGCCATGCGCTATGTCGACGGTTATAGTACTTGC 20322 32 100.0 38 ................................ AGATCCCTCTTTATAAAGTGCCTGCATTTTTGTCCAGG 20392 32 100.0 34 ................................ GCTGATGCCGCTGCCTATAAAACAACGAGCTTTG 20458 32 100.0 35 ................................ CGCATTTCTTCCTCGCTGGCAAGCTTGCCTAAAAA 20525 32 100.0 38 ................................ TCCTATCCTATTTTCTTTTTTCGCCCTGGCTTGCCCAG 20595 32 100.0 33 ................................ TGTTTACTTGTTTTATAATGTCATCCAGATAAA 20660 32 100.0 34 ................................ CATATTAGATACTCACCAGCACTATCCACACGAC 20726 32 100.0 34 ................................ ATTAAAGATCAAAATTTTGTCTTTACGAACAGCC 20792 32 100.0 35 ................................ GCTTTCTTCCTGTACGCATTTACATGCCCTATTAA 20859 32 100.0 35 ................................ AATCCGGTATGCCTCAGCATCAGCAACGGCATTGA 20926 32 100.0 37 ................................ ATCCAGTGCCCTCCTTTCGATAGTTTTATTATATTAG 20995 32 100.0 36 ................................ CGCTTCCTTGTTGAATATTCCGAACATTGTTGTTCA 21063 32 100.0 35 ................................ ATGCCTTTAGCTCAAAAATATAAGAGCAAAACGCC 21130 32 100.0 33 ................................ AATTTGGACAAGTCTCAACGGCTGGAACGAATC 21195 32 100.0 35 ................................ CGGTACCAGTAGAATCAGTACAAACGCCTGTTACT 21262 32 100.0 36 ................................ TTGACGAGGATACAGGTGAGGTTGGGCCAGGTCTGC 21330 32 100.0 33 ................................ TAACATGTCTACGCTGGCGCAGATGTATCAAGG 21395 32 93.8 0 ........................G..A.... | ========== ====== ====== ====== ================================ ====================================== ================== 18 32 99.7 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAACAACGGAGAAATCGGAAAGGTTAAAGCAGATTACCATCCCTGTAAAGTTTCCCGAAGGAGGGCAGCCGTTGGCTAATGGGCCGGGTCAACCCGAGCAGGTAGCTGATTTAGTCACCTTTTTGGCCTCTGATCATTCGCGTCACATTACTGGCGCACAAATTGTGATTGATGGGGCGGAATCCTTATTGTTTTAGCGCTGATGGATTTTTGGTGATAAAAAAATGATGAATGGTGTTTGAGTGTATGGTCTTGGTTATGATGCTTATTTATGGTATATGTATAAAGGAAGATAAAGCGAATTTTCTCTCTATTGTTTGGTGCGAATGTGAAGCTCACATAAAATCCCTAGATCCTTCGCACCTCGAAACTTGTCGAAAAAGAACCAAATCAGCCTTCATTGATAAAAGTCAATCCTAGATTCAAGCTTTTTTGGTATCGTTTTTATGAAAATGTACAGAATTGATATCTTTTCTGGATCAATTGGGTACATTTTCGCT # Right flank : TCGGGGCGCGGGTTGCATGTAACTGGCAATCCATGTCCACTCCACATGAAGATGTATTTTAAAACTCATTTTGTAAGTGTAATTCGAACTTAAAATATTTAATTTTGGTGTATGTCAAGAATCCTCAGAGAAAGAGCTCTGGGGATTTTTTTATGAGTGCTTGATTCGCTCAAAATATTGAATTTTTCTCTAAAATAATTTGTTTGGGAGGAAAATGTAAATCAATGTCGAAAAAAGTAAATAAGTCTTAGTTCAAGAGACTCATTCAGTGGAATGTATAGACTCATATAGGCCGAAATTAAAGGAGTGAAAAAATGGAGTATATCGCCCACATACGGGAAAGTGACCAAGTGATTCAGACGGTTGCTGAACATCTATTGGAAACTCGACAATTAGCAGAGGCCTTTGGTGATAAAATAGGCATACGACATATTACCGGACTCGCTGGTATGCTGCATGACTTGGGGAAATACACAGAAGAATTCCAGCATTACATACGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 30120-30495 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000131.1 Paenibacillus sp. 1-18 S118_contig00479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 30120 32 100.0 36 ................................ AGCCATTTTAGCCTGATAGTCAGCAATAAACTGATC 30188 32 100.0 38 ................................ ACTGATAATGATCCCCTCACTGTTGGCCAAGCCTTCAC 30258 32 100.0 39 ................................ TCTTCATCCTAATCTCTCCCTATCATTGTGTATTTTATA 30329 32 100.0 34 ................................ TGCAGTATCATTGTTACAAGGCAAAATGTTAAAC 30395 32 100.0 37 ................................ AATTTCTGCACATACTCCAGCAAGGATTATATATTGT 30464 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 6 32 100.0 37 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATATTGATTACTTATGATGTAAGTACAGTAGACAGAGAAGGCAGAAAGAGATTGGCAAAGGTTGCGAAAAAGTGTGTTGATCACGGACAAAGGGTACAAAACTCCGTATTTGAATGTATTTTGGATTCAACCCAGTTCCGCCGTTTAAAATATGAATTAGAAGAGTTGATAGACAAAAAGGAAGACAGCCTGCGTTTCTACAACTTAGGTGATAACTACAAAAAGAAAGTAGAGCATATAGGGGCCAAAGAGGCTTACGATATGGAGAGTCCACTTATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAAATTGTCGAAAATCAATTGAATCAATTACCTTTAGTAAAAGTCAATGGTTGATTCAAGCTTTTTTGGCATCAGTTTTTGCGACAATGTGTGGAATTGATATCATAAGGGTATGAATTACTGCATTTTCGCT # Right flank : GTATAGATGATAGTTGGATCGGCTACACTAAGTTGGACAGAAAAAATAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 755-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000254.1 Paenibacillus sp. 1-18 S118_contig00301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 754 32 100.0 35 ................................ AAGCGCGCAGCTTTTCGATCCTCAGATTCATCATC 687 32 100.0 37 ................................ ACGTGTGACTATATTACCATATTTTCGGCGTTACGTA 618 32 100.0 35 ................................ GATCTAACGGTCATGCGTCCTTATTTATTGCTCAA 551 32 100.0 37 ................................ GTCAGTAAGGATTCGAGAGGACGCGTTAAGGTCCGTC 482 32 100.0 34 ................................ TGGTTCAAAAAAATCGAAGGGAAGCGGGGGCAAA 416 32 100.0 35 ................................ GCAAAATTAAATGAATATGAGTTAATGATGTTTGA 349 32 100.0 36 ................................ AATTTCTTTGGCAGCTGGAAGGGAACGTTTAAAACG 281 32 100.0 34 ................................ AAACATCCATGTAGCAAACACTATAAAAATGAAA 215 32 100.0 36 ................................ TCGCTAGACTTCCCACGACCCTGAATGAGCTGAAGG 147 32 100.0 34 ................................ AAGTTTGCTGGAAGCGATAATGATGCATACAGGC 81 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 100.0 35 GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Left flank : AGTTGCTGGTGAGCCCGGTAAGCAAATTATTGATCCCCACCAAAAGATGGATCAGGCTTATTTCCGCGATTTTGCTCCTGAATCCAAGGTGTATATAGGTGAAGTGAAGCAATTGGAGCTTTTTGAATAAGCATGTTGGAGACTAATATTCGCTCGTCATTGGCACGGAGGGGGCTCTGTGCTTGAGGCTGATCTGGCTCTGACCGAATATATGGTGTGTCTTATCTTCCAAGAACCGCCCTGAACTGGTGTCGATTCGTATTATGCACATCGACCTGTTCCGTTTCTTTCAGCGTCAGGCAGATCAATCGAATCGTAAAGGTGCGAATATAAAGCTCCCATGAATTCCCCGAGTCCTTCGCACCTCGAAATTTGTCGAAAGGTATTGGGATCACTACTTATCCGTAAAAGTCAATAGTTGATCCAAGCTTTTTGGGCATCAGTTTTTGCATCAATGTAGTATTTGATATCATTAGGATATCAAATACTACATTTTTGCT # Right flank : TATAATGACCAAATGCACGCCTGTTGAATAACCACAAAATGGTAGAAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9360-8996 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000254.1 Paenibacillus sp. 1-18 S118_contig00301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9359 32 100.0 34 ................................ TGTACATATGGTTAACGCTTGGGGCCAGTCCCGG 9293 32 100.0 36 ................................ CACTAGCAATCAGCGCACACCTCATGGGGTGAAGAT 9225 32 100.0 33 ................................ GGCTCCCTCCTGCCTTATGCATTGCCCCACAAG 9160 32 100.0 36 ................................ TATAATACACTCCCAGGTACGCCGGACAACGAGAAA 9092 32 100.0 33 ................................ AAGCCACGGTTTTGAATGTCAGTAATGGTCAAA 9027 32 96.9 0 .............C.................. | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.5 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTAAAAAAGTTGTTTGATTTACTGTTGACAATCCATAGTGGGATAGGCGGAGCTGTAAC # Right flank : CGGCAGGTGGGGGGCGCAGCTGGAGGCTCGGCTTTGTTGCTCTCTATTTAACAGCTGTGTTCATAAAATTAAGAAAAGGTACATTTATAATACCTTCGTATCCTGAAATGGTATAATTAACTAAGGGGATTCTCATTCATCAGGAGGGGCTATGGAATCAGAAGACATTCGCCGGCAATTACTAAGTCATATTCAGAGTTACAAGAAATCTACCATTCTACTTGAAGAGTTGGCAGCTTTTATGAGTGGACATGACATTAATTATCCATCATTTGCTGAGACCATTTTACAACTCGAGGAAATGCAGATATTAGTGGGGGTCAAAGCGCATGGCAGGAACGGGAAACGGCCCGCATTGGCTTACCAATATAAAATTCGTCGAGTGTTCATGCGACAGGGGCATTTACAAAGAATTCAACAGCACTCTGCTCAATTTCATCCAAGTATAAATCTGGATTGGTATTATGGGCAGTCTGAAGACACATGGAACAAGGACCTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 335-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000322.1 Paenibacillus sp. 1-18 S118_contig00196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 334 32 100.0 36 ................................ AGAGTTGGCGGAGTGTCAGGGTCTCTCATTGGAGTC 266 32 100.0 35 ................................ ATACGACAAATGTCGTAGTGGCTCTTACGGATATC 199 32 100.0 36 ................................ TCTTTGCCGTTAATCTTTATGCAGCGAGTAAGCGAA 131 32 100.0 35 ................................ AGTTCGTAGCCCGTGCCAGTGATCACCCATGTAGA 64 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : C # Right flank : TCGTATACTCGTGCTGCTGTGCAGGCAGCTACT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8709-9214 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000384.1 Paenibacillus sp. 1-18 S118_contig00472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 8709 32 100.0 34 ................................ TTATTTCCCAAAAGGAGGTTTTTAGATGTCCGGA 8775 32 100.0 36 ................................ CACGTAGACATAATCACGGTCCTCGCCAGTTATTAG 8843 32 100.0 37 ................................ TCCCCACCTTTATCCTCGCGATGTATTTTACGGTTGA 8912 32 100.0 37 ................................ TAAGAAAAGGCAGCCGTTAGGCCACCTCTCCTTTACC 8981 32 100.0 34 ................................ TAAAAAAATAATCAATCAGCTCCTTATAAACGGA 9047 32 100.0 36 ................................ TTGAACAGCAGCGCCCAAATTAATCAGGCGTTCCGC 9115 32 100.0 36 ................................ AGGTGGCTTTCTTTCTATAATTCTGATTTAGGAGAG 9183 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 100.0 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CAGTTTGCACAGCGCTCAAACAGGATGTGCTTACACCGCATCACCAGGATTATAACGGCATTATTGTAGAGCCTTATCATAAGGACATTGAATACGAGGCTCCCCGTGACGATGATTCTCCTGTCCCTATTTCATTTCTTTCAGCGTCGGCTCATTTCCGCATCATATTAACCTGTGAGGGAGAGCAGGAACAAGCTATGAAATGGCTAAGCTTGGCAAAAGCAATCCTGCTCGGAGCGCTAAGAGATGAAGGCATTGGCGGGAAGACCAACGCAGGATATGGAAGGTTGTTAGAGGTTTAATTGGACAGTGAAGTAAAGGTGCGAATGTAAAGCTCCCATGAATTCCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAGGTATTGGGATCACTACTTATCCATAAAAGTCAATAGTTGATCCAAGCTTATTGGGCATCATTTTTTGCATCAATGTGGAGAATTGATATCATTAGGGTATTAATTGCTTCATTTTCGCG # Right flank : TTGCCCACTGGCTGAACAAGTTTACCCAGTGTTTTGGTCGCACTCTATATGAGTTCAAATTTGTCCAGATGTGGAAGATTTGAAGGCCTTTAAGTCGCACTCCATGTGACAAATTGACGATGCGGCAGGATTCACGGTTGGTCGTTACGGCATATAGTTTTGCTCGGCTGGTTAGGCGGTGGAATAAGGCAAGGATATGAGACCGTACAGAGGATAAAATGCGGAAGAACCACCGAAGGATGAAAAATCCAGTACGGTGGTTCTTTTTTTTCACTCGTCTTGTATGCCATCATTATAGGGGGAGGCGATGAAGGATGTTCCAGGATTTCAAGCTCGTCAGTGACCGTCCGGTCTCGATACAAGTAAAAGAATACGTCAATCGTTTAATTATAAAAGGGGTGCTTCAGGCGGATCAGAAGCTGCCCTCCACACGAGAAATGAGCGTTCTGCTTAAGGTGAGCCGAAATACAGTCATTACAGCCTATGAAGGTTTGGAGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15592-15756 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000384.1 Paenibacillus sp. 1-18 S118_contig00472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 15592 32 100.0 34 ................................ ACTTATTTAGAAAGTCAATCTGTAACCGGCCAGG 15658 32 100.0 35 ................................ AGTGAGGGTGATGATGTGGAGGATGGTAACTATGA 15725 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGCCTTAATTGGGCACGTACGGATCTGTGAGGCTCACGTCTACTCGACCCGAACGTCTTCATAATATATTTTATAAATACCTTTATGATTTTCGAAAACATATGTATTTTTCTGATTAATGTAGTGGGTATATACATCCAAAGCCGGAACGTTCAGCTTAGGTGTTAACTGGTGGGACCCTGCTTTTAAATGCGCTATCGATGAATTAAATATATTCGAATGTGCGCTGTCTCTTCACAGGTGGTAGAACTGGCAGAGTTGAAATTCAGGCAGGTATTTGCTGCAATGGCAAAATAATTTTTTGAAAGCGATCTGTTCAGGTGCGAATGTGAAGCTCACATGAATTCCCCGAGGGATTCGCACCTCAGATTTTGTCGATAGCGTGTCGAATGTGAACAAGTTGTAAATGATCGCAAGGGGATGAGGTAATAATAGATGCGTTTTTGCTGAAATAACGCTAGAATATTACTTAAATAGGGGAGATTAGACCCATTTTCGCT # Right flank : A # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9886-9375 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000072.1 Paenibacillus sp. 1-18 S118_contig00195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 9885 31 96.9 36 -............................... TCGTAAGGTTTTTATCTTTGCGATGGTAGCCATTGG 9818 32 100.0 36 ................................ ATAACACAGCAGAAGACTATAAAAGCGGCGCAGCCA 9750 32 100.0 38 ................................ CTAAAGTGCCAATAAAGCGAATCACAAAATAATACTCA 9680 32 96.9 38 .............................G.. ACTGGTATCTCTTTGCCACAGTCGCAGCGGCATAACCA 9610 32 96.9 34 ...................T............ GCCTGACCGGGCGTGATGAGAGGGCTGCGTTTAA 9544 32 100.0 36 ................................ CTCGTCCACGATATTTCCCCATTTATCTTGCAGCAT 9476 32 100.0 38 ................................ TTATAATCCCTTACGGCCTCAGCTGCCTTGCGCCCCAA 9406 32 84.4 0 ...........................TGCTA | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 96.9 37 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : | # Right flank : CAGGAGGTGTTATTTTGGATTTATTTCTAGTTGTACTTAATATTTTAGTTATCCTTCTTTCAATTGCTGGTGGGGTGCTTTTAATCGGTTTATTGTACAGGGGAAATACGCTGCTAGGTTTACTTATTGCTGAGAAAAAGAACAAGAACAACAATACTGAGAAAAAAATATAGAAAACAACAATCTCCGTCGATATTTAAGGTTAGTGGAGATTGTTTTACGTTTCATTATTTGTGGCATAGTAAGAGTTCTTCATCGGTGACACCCTGCTGGCAAAGCCGGTGGGGTGTTTTTTTGTTTATATTACTCCTATAGACTATCCTTCAAGCCTTCATGTAAACTATGCCAAAAATTTGTCATGGGGATTAGTTGAATAATATATTGACATATGGTTAATTTTGGAGAAGAATAAGGTATGTTTTTTAAAATTATGGAATTTTTATGTGAAGGGTGGTTATGACTTGAAGCATACACCTATGATTACTACGGAGTTTGAAGCT # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38-1122 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000278.1 Paenibacillus sp. 1-18 S118_contig00363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38 30 100.0 36 .............................. ACATGAAGCGGCATTGATACTCTATGAGAACGTGGC 104 30 100.0 36 .............................. TAGAGTCATCAGCTCTGAATTGGCGAAAAATAAGCC 170 30 100.0 36 .............................. CAATGTGTGCGGCAGGACATTCGCCCTGCACCCATC 236 30 100.0 36 .............................. TAAAAATCATTCATTATCGGAAAATAGTTTTTGGCC 302 30 100.0 37 .............................. GGAATCATCCTCTGTCGATAAACACTCACAACAATTC 369 30 100.0 36 .............................. AATTCTGATATAATAGCCGACGGTTCTGCGTAAACA 435 30 100.0 36 .............................. CACGCTGAAGCTTTTCATGGAGTTCCGTGATCATTC 501 30 100.0 36 .............................. TCGGTGGTGTTTCTCGCTTCGGTATGTCGAAGATGA 567 30 100.0 36 .............................. AACGCTTGTCTCCATTCGTTTAGCGTGGTTCTTGGT 633 30 100.0 36 .............................. TAAATTTGGGGTATTGTATACGCCGGACAAATCCGG 699 30 100.0 36 .............................. GATACTTCTTCTACGCCAACCAATTCGCACGTACTA 765 28 93.3 36 ......................--...... TTTGTGTGCGTACAAGCTGTACGTACTGAGCTACAT 829 30 100.0 36 .............................. ACAAATACCGGGTAAGGAGTGCGCCGGATTCTGGCG 895 30 96.7 36 .....T........................ GTAATAATTTCCGTTGAGCTTAATGTCCGACTTCCA 961 30 100.0 36 .............................. CAGATAAACTCACCATGACGGCTGTCCTTGTATAAA 1027 30 100.0 36 .............................. TGCAGGTTATTGTTTTGCTCGCGCAACTCATTTAGC 1093 30 90.0 0 ................C......A.....C | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 98.8 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : CTTGATAAATTTTTTATAGATAAACATCGAAGGAACCC # Right flank : CAACACCCCTTTTGAACACTATACGATAATTGCCAGCCCCAATTATACTCCTTATTTTTATAATCCACTTAAATACGTTAACAATCGACAAAAATTCGGGAATTTTGATTGATATTTAGGAAGAAAACATATAAAATTGGATTAAAATGTAACCAAGAAGGAATTGCGTGTGAAAGAATTTGACTTTGGTGAAGTAACAGATCTTGATTCCATTGTCGGAATGCTAAAAATGGCTTTTTCGCTTGAGGAATGGGAACAAATGATTCAAATTGCAGACCAACTGCATACTCAAGTTCATCAGGTATACGAACAACAGCAGTTGGAACGTACAAAAGGTGGACAGCCTAGAACTTTACATATGAAACGACCACTTGTATACTACTTAGGATTTAGTCAATTAACCAAAGGTATAGCTTTTCAAAAACAAGGTAAGTATGAGTTCTCTAGAGAGTGTGTTGAAAAATACGCCGAACTGGGTTGGGTAGACGGCCTTAATGAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 2872-3763 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000278.1 Paenibacillus sp. 1-18 S118_contig00363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2872 30 100.0 37 .............................. TGGCTTCTTGAGCAGTAGCATACTTAGGTTCTTTCTC 2939 30 100.0 35 .............................. TACATAAAACTTGAATACTCACTGGCGTTCGATTC 3004 30 100.0 36 .............................. GCAGATCATGCAATTGGTTTTTGATTGCTATTATGG 3070 30 100.0 36 .............................. GGCTATGAAAAACTTGTATGGAGCCTTCCACGTGGC 3136 30 100.0 35 .............................. AATACAATAATATCCCGTTCCTCATAAGCCCTTTT 3201 30 100.0 37 .............................. CTGGTTTATTACAGAAGATGAAGCAGATCAAATATGT 3268 30 100.0 36 .............................. ACAGCAGCCACCGCGACAGTATAATCCGTCTCCAGC 3334 30 100.0 36 .............................. TTTCGCTATCAGTGCCCCAACGCTTGTCCATCAAGT 3400 30 100.0 38 .............................. AAGGAATCCTTAACGTCTGCGCCCACCGCGTCGTTTGG 3468 30 96.7 35 ..............A............... AATACCCCAATACCAATATAAAATAAATATGTTAA 3533 30 86.7 36 .C.......T......GA............ AGAATTACGAGATAAGATTGATGACCTAAAGCAAAT 3599 30 100.0 36 .............................. ATTGTTTACGCCACTCCGCAGGATGTAGCGGATTCC 3665 30 90.0 39 ...........CT..A.............. CAGGGCGGGACTATGATTCCGATGAGTCCGTGCTTTCCT 3734 30 76.7 0 .................A..A..C.C.GTC | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 96.4 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : TAAATATCGTGGATATTCGAAATCAATCAATACTGCCTATTATTTTAAAATCGGTATTTACTTCTTTTTTAGTAAGTTTGGTATTGGGTTCAATTACTAATTGGCTATTCAGAAAGAAGTAGCTCACAGCCATTAGTAAGAATATATCCGAACAAAAAGAAAAGAAACATCGGATGTTATGGTCATAGTCTAGTTTTCAGTATTTTAAAACTAGAATTATAAATTTAAATACACCAAGTGTTTCATTCATTATGAGCAATTTTTTCTGATGCATTTTACATTATACTCTTAGGTAAGCGATCTCGACTAGACCAAAGGTCTATGTTTTTCCCAACCTTATAACTAGCTAGAGCGAGGGGAATTCTTAGAACCACAGGGGATACAGCTATTTTTCTTAACACTTGGCAAGAAGCGACCTACGGTTGGGAAAAAATTGCGAAACCCTTGTGGCTGTAGTAAAATAACCACATTGCGATTTTAGAAAGCTTGATTTTACTAGC # Right flank : CCTAAGCAGCGAAGCGGGCAGAATTGTTCTGGAGAAGCGTAAGCGTTTGCCTTTATCCCCGGATTTTAACCCCTGATGGGTTTATACAATCCAGAAAATCCGGGGATAACAGCAATCGGAAGAACAATCTGCACGTGTAGCGGTCTAAGTACCGTCGAACCTTATTTTAAAATAGAAGTATAATGAAAAAAATATTTACAAATCATGGGGCAAGGTCTATACTCTATATCAAGTTAGGAGGTGAATATATTGTGCTTTGAAATTCATGTAACAACGTTAATGAAACAATTATCTCATCATCTGGAGATACCGGAGCGTATCGGAGCCTGGATTGGTCGGGCGGGGCTGAATGACGAAACGTTAAAGCAGACGCACTATGACAAGGACTACAAGCACTATACATTCGGATCGCCTTTTCCGCGTGAAAAGGAGGGGGTATATAAGCAAGGTCGTGTATACGTCATTACGATCCGCAGTTCCATGGAGATTACGTTACGTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 3 13449-14664 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000278.1 Paenibacillus sp. 1-18 S118_contig00363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13449 30 100.0 38 .............................. ATTTCTGGAATCTTCATACCGCCTTTACCCTTTTCCGT 13517 30 100.0 36 .............................. TGAAGTAGGTACGGGGATTGTACTGCGTGAACGAAA 13583 30 100.0 35 .............................. CCAGATTGTATAGCACGGTCGATGCGCACTGCGTC 13648 30 100.0 36 .............................. AACAGTTTAAAGCATCCACGAAGTTGTCTTTTCTTA 13714 30 100.0 35 .............................. ATGGATTCTCCAGCGTTTTCTCCCATCAACCCTGA 13779 30 100.0 36 .............................. TTTTGATGATCGTGTCAACGTCAGCGCCGTTATTAA 13845 30 100.0 36 .............................. AGCTACGGCGGAGGTAGCCAATGCTGTTCCTGCTCA 13911 30 100.0 36 .............................. GATAACCTAGTGGTATTAAGAGGCGGTATTAGGGAC 13977 30 100.0 35 .............................. ACTTTGCCGATATAGGAGTTTTCAAAGACTCGTTG 14042 30 100.0 36 .............................. GCGGCGCTCCTGCCGTAGCTGCCAACGTCTTATCTG 14108 30 100.0 35 .............................. GCGTCTAAATATTTTTTAGATACACCATCCGTGTA 14173 30 100.0 36 .............................. TTCTGAAGGACAACCAGCACATCCTGGGGTAAATAT 14239 30 100.0 36 .............................. ACTCACGTAGTTTGGCGTTAATGAGCTGCTTTGTTT 14305 30 100.0 36 .............................. CAGCAAGAACTATGGAGGAGCACGGCCAGGAGCGGG 14371 30 100.0 37 .............................. GTTTCTGAACATCGCGGCTCCATTGCTTCATCGCATC 14438 30 100.0 36 .............................. TCGGTATGATAAGCCAAGTCGATCCGATTAATCTTG 14504 30 100.0 36 .............................. TCGTCCCGGCACAATATCGTCTCTTGAATGACGGCT 14570 30 86.7 35 ..............A..A..A....T.... CCGCTCATGAGAAGTAAGTGGGATTACCGAGGTCA 14635 30 70.0 0 AC.C....CT....CA.......A.C.... | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 97.7 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : CCTTTTGTTCCCTTTTTGGAAAAGGAAAAGAGGTAGAAGGATATGGCGAAAAATTATAACTATGTCATTCTGGTGTATGATATCGGAGAAGAACGAGTGGGCAAGGTATTTAAAATATGTAAAAAGTATCTCGTTCATTTCCAGAAATCCGTATTTCGAGGTGAAATTACCCCCGCTAATTTAATTCAGCTACGCGCTGAGTTAAAAAAGGTTATTGATGAAGGGACCGACTTTGTTGCCGTTTTTAAGATGACAGGTGATTATGTTTTCGACGAGGAAATCATCGGTGTCCGTTTGAATGATTCGGAGTCCTTATTACTGTAATTTTCCCAACCGCCTTAATGGACAGATAGCTGGTTCTTCTTACTGCCCCAAGGGTTATCGAGGATTTTCTGTGCAATTAGCGTCACCCCTTTTCCGGTTGGGGAAAAATTGCGAAACCCTTGGGGCTGTAGTAAACTAGGCACATTACTGAAATTAAAAAGCTTGATTTTACTAGC # Right flank : TTACTGGCAGTTACAGTTCCCCTATATTATACTGAAAGAGTTTACAATCTAATCTTAGGAATAGGGTGTTATGATATCCGGGACATGCTGTAGGCAAGAGATCAGGCATGTCAAATCATGAGCTGCGGCACAGGACCGTCAATAAAGGAGAGCAACGATGTTTGTTATACGGGGAACACAAAAACTGCTGAAGGAATGGGCTGCCGAACCACTTCACGTTGATATTTATCCGCCTTTAAACAGTTGGCATGCCAGCTTGTTTTTACTGAATCGGAGAAAAAATATTGTGTTTATGCATGATGCATCCCGCTTGAGCATTACGCTGTTTGGGATTAAAAAATCGCAGTACAAACACCTGCCGACTCTTTTTGTCCAAGCCCTGAAGGAATTGATGATCAGTGAAGGTTTTGATGAGCAGATCGTAAAGGCATACACACAGGAAGGCGAGCAGATGCTGGCTACGACGACGAACAGCTATAGTGTGATGAGAACCTTGGATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 31-724 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSB01000089.1 Paenibacillus sp. 1-18 S118_contig00473, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================================================================================================================================================================= ================== 31 32 100.0 37 ................................ TGACGATGACGCAGACGACATTGAGATTTTCAACCAC 100 32 100.0 34 ................................ TCGTATTGCGGGTATTGTCTTTTCATGTTTTGGA 166 32 100.0 37 ................................ CTCTGCGACATCCTTAATGTCTGGCACTTCCTCGCCC 235 32 100.0 36 ................................ TTTTAGAAATCACAAGTCACATTTGATAATCGGCCT 303 32 84.4 221 ....T.....G........T........C..G ACAGCCTGTGTTTTCATGGAAAGCTTACTTATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCAGGTTCTTCGCACCTCGAAAAATGTCGAAAAATATTAAATTTGCTATTTATCCGTAAAAGTCAATAGCTGATCCAAGCTTATTTGGAATCATTTTTTGCGATTATGTTGTGGGATTGATATCATTAGGGTATGAATTGCTGCATTTTCGCT G [316] 557 32 93.8 34 .........C..G................... TACTCACCAAAACGACATATTAAACTATGATCCA 623 32 93.8 38 .........C..G................... AAGGACTTCGAAGGTGATAAGAAACTACAGGAAGCCGC 693 32 93.8 0 .........C..G................... | ========== ====== ====== ====== ================================ ============================================================================================================================================================================================================================= ================== 8 32 95.7 63 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TCTTCCAGATGGAAAGGCACTGTTCGCTACG # Right flank : TTGACTATCAGATCCCGTAGACTTACCGTCCATAGGGTTATTTTACGCTTTGTGATATAAGATGAGTGCTATGGGTATCTATGCAATTTTGATAGGAATTGTGACTGGAGAAATAATCAACTTCGTATTATCAAAGCGAGAGAAATGAACTTATGCATCCCTTGATTGATCAAAATCAGGGGATTTTTCATTAAATTAAAAAAGTCATAGAATTTCTACCTGCAACCTCTACATCATTTACTGGTGGTAATGTATATGGAAAAATGAAATAGTCATGTCAACATTGTGAAATCTTTTATTTAGGCAATCCAATTCTACTTTTGCTACTCGTTTCACAATCTCCCCTTATGTGTAAGTAATGCGATTTATTTATTACAAACATTAGTTGCATAATATATTGACAGATGGTTAATTTTGGAGAAGAATAAAGTATGTTTTTTAAAATAATGGGATTTTTATGTGAAGGGTGGTTATGACTTGAAGCATACACCTACGATTTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-2.87, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //