Array 1 172950-173117 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL982513.1 Prevotella pallens ATCC 700821 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ===================================================== ================== 172950 22 100.0 49 ...................... GTGCTTAATAATTCTTGCGCAGTGAGTATAGATTTGCGGTCGCAAAGTC 173021 22 100.0 53 ...................... ATACTTAATAATCGTGTTAATGATATGAAAGCGGGTTTGAAACTCGCTAAGTC 173096 22 100.0 0 ...................... | ========== ====== ====== ====== ====================== ===================================================== ================== 3 22 100.0 52 TTAATCCTTGTTGTAATGGAAT # Left flank : CCAGAGCATCTGTTTCGGTTTTTAGTTTTTCTTCTAAAAAGAGCACACCTTCTTTTCCACGCTTTAGAAATCCGTTCCCTAAAATTCGTTTCAAATCAGCATTCTTCGAATCTTTAAAATAGCAATAATGGCGTTCCATACCTAATGCAGAACCATCTTTCAATAACATATTCAGAAAGTTATTGTGTACCGTAAAACTATCTGTAGCTAAAGCCTCCTTATAATAAGAGGAAACATCGTTATCGTTCATAATCAATTTAATACTATTTTAAAATATAAATAATCTGTTTATCGTAGTCGTACGCCCATTCGTAATTAGCTATTCAGCATTAATAGTTTAACATTAAACCTTCTTCCAGTCCAGTTTCTAAATGGTGCCAACAAAGCTCTAAACCAAATTGTCTTAACATAAAACTAAAAATAACAGAATATATTGTGCCTTAAGCATTTATTGTATGCCATATTTAATAAAAAGCTTAAATCATTAAGCACCGAAAATA # Right flank : TATACTTAATAATTATATTTTCTCCAATAACTGATAGTAACTCATAACGCTTTTCTTTCCAAATTCTCTATAGATTTGGCTTTAACATCTCCTATAATGGCTTGATAACAGGCAATTTGTCATTATTGAAGTCAAACTTAAAGACTTTATTATCTGTCAGCGACTTCTGATAAAAGAATTTAGGATATCTCGATGATCCACTTTGAACACCAACGCCTATTGTTGAATCTTTCTTTAGTTTATTCCTTATGGCATTAAATAATCTTTTAATCCCTTCTTTAGGTTCTTTAGAAATCAACCGCAATGAAATCAACTCAACTTCGTTTTCATTTGCCCTTCCTCCTATTCCTTCAATAGTTCCCTTGCATACTTCATCATCATAAAAAGAAATACCTGCTTTGTTGTAATCTTTTAAAGAGACAAAGAAAAACAACTTGTCCTCTATACCATTGCCAATAACACTTCTATAATTTGCCATATTGATTGCTGTACAAAAAACA # Questionable array : NO Score: 4.55 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.25, 7:-0.60, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAATCCTTGTTGTAATGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.73%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 174269-174016 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL982513.1 Prevotella pallens ATCC 700821 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 174268 37 100.0 36 ..................................... AACCAAAAGTTCATTCTTGTTCTTTTCATTTCTGTA 174195 37 100.0 33 ..................................... TGTTAGTTGCTGACTAAGAGTTTGCTGCTCTGC 174125 37 100.0 35 ..................................... TTCGTAAGCCATTCAGCTGCTTTTCGCAAGCTGTC 174053 37 83.8 0 ..C............................GGGAG. | T [174018] ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 96.0 35 ATTATTAAGTATATTCCATTACAACAAGGATTAAGAC # Left flank : AGACGTGAAATATATTCCTACGATTATCTTTCGCCCCTTACCGCTTGGAATAGCAAGAAGCAAAGAAGATTGTAAATAAAAGATAGCCGTTAAGCTACCTTTTATTTATGTCCTATTGGTTGGGTTCTATGAAAGCAAGCTCGAGTTTTGCAAACGTTCTATCCAGGTATCTTGCAAAGGTGCAACTCTTTCCAGTGTATTTGAGATGATAAACATCAAAACTATCAGCAGGAAATTGTATCGTAAAATCTCCCATCCTCATAACTTCAGTAAAATCTTTCTTCTTTGCGGTAAAGTTTGCCGAATTGTTTCCCTCAATAGTGAAGTTAAGTGTTATACTTCTTTCATTTACTTTAAGAGTAATATTAGCGTACTGCACGCCATCACGCAATCTATCATTGTTGGCTATATAGTCTTTCAGTGGATAATATCTATTGATGGTATCTAAAAACTCTCTCCCATACGGGCACCTCACGCCTTTAAAGCATCTTTTCCATTTA # Right flank : AGGAACTCGACAGTTTCGGTAGAAAGAGAAGGAAGGACAACAATAATTCCTCCTTCATTCCGTTTAAGTATCAAGGTCAGTATGAGGACGTTGAGACGGGACTGTATTATAACCGTTTCCACTACTATGACTCTTGTGCAGGTAATTACATTAGTCAGAATCCAATTTGGTTATCGGGGGAGATAATTTATATTCTTATGTATAAAATCTAACAATATGTATAGATACGTTTGTATTATCTGGGCAAAGATGGATGGGAAAACAAAAAATAGACACTCATTAATTGCTTATGTCTTATATAAATGTTATTATGCCTTTGGTTGAGTTTGTGCCATATATTAACGATATGGTAGTTAGGTATGATTGTGTTGTATATTTTAGGAAAAAGAACACAAAAGATGTTTTTTGTACAGCAATCAATATGGCAAATTATAGAAGTGTTATTGGCAATGGTATAGAGGACAAGTTGTTTTTCTTTGTCTCTTTAAAAGATTACAACA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATTAAGTATATTCCATTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1330098-1329409 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL982513.1 Prevotella pallens ATCC 700821 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1330097 36 97.2 29 ..G................................. CATAATTAAAATTTTTTATTTGTTTAACT 1330032 36 100.0 29 .................................... TATAGTAAATTATTCAAGTACTTTAGTTA 1329967 36 100.0 30 .................................... TTTCAACACTTTTTTTTAGTTGTCTTTTTG 1329901 36 100.0 29 .................................... TTTGTTATTCCCATTTTTTTAATTTTTAA 1329836 36 100.0 29 .................................... CTCTTAAGAGTTTTATAAACTTACATTGT 1329771 36 97.2 29 .....................A.............. CTCTTAAGAGTTTTATAAACTTACATTGT 1329706 36 97.2 29 .....................A.............. CTCTTAAGAGTTTTATAAACTTACATTGT 1329641 35 94.4 30 .............-.......A.............. TATAATAAACTTCATTCTTTTTAACTTTAT 1329576 36 91.7 30 ....T........T.......A.............. TAGACCATTTCGTTTTTGAGAATAAAAATG 1329510 36 91.7 30 ....T........T.......A.............. TAGACCATTTCGTTTTTGAGAATAAAAATG 1329444 36 91.7 0 ....T........T.......A.............. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 96.5 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTGAGAACATTAAACGTGCGCACTATGAAGCTATACTGAAGGCACACCAAAGCATTTATAAATTGCTTAGGTTTACCACAGACACAGAAAATGACGACTGCATACTGGTGTGGGAACAGCCTAAGGATGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGCCAATTCTTCAAAGAGCTAACCGAAGAGGTATACAACAAAGGCAATGGCATCTATCTATCAAAAGAGGTTATGTCGCTGATATTTAAATATAGAACCCTTGTTCATAAACTTTTGCTTGCTGAAAAGAACAACCCTGATGAGAAGATAATGATACATAATCGAGAGGTTGTAAAGGAAATGATAGAAATTAACCAGAGCCTCTCAATACAAATCAGAAAAGATATAGATTTACAACAACGAAATTTATATAACCATAATAAGAAAGGAAAAAAATACTGGTGGAAAAGAAAGAAACAAAACATATAAGAATCAAACAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGTAAGTGTACAGAATGTGGAGGGTAAAAATAAATTGGGAAACATGTCTTTTAAGGAGAGAAAAAGGCAAGAAAAGTGGAAATAGTTTTCACAAGCAAAACTGTTGATAATTATTTCGTTATCAGTTTATTGTGAAATCTGTTTTTTCATGAGAAAGTACAGAATATACATAATACAAAACCGCCTCTTTTGAAATTCAAAAGAGGCAGTTTTGTGTCGTAAAATAGGCATTCTTGCGCTGCTATTTAGTCTACCCTTATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : GTTGTATCTGCCTTCTGTTTGAAAGGTAAAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //