Array 1 97292-96349 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJB01000009.1 Aeromicrobium sp. PE09-221 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 97291 28 100.0 33 ............................ CGTGCTGTGCGTCGTGACCGCCGACAAGCCCTG 97230 28 100.0 33 ............................ CAATGCCGTGAAGGCTTTGGAGCGAGGCGCGGA 97169 28 100.0 33 ............................ CACTCCCCAGGCCACCCGATACGCCGTGACATT 97108 28 92.9 33 ...........A.G.............. TCGCACCTTCCACGCGGCGGGCACGACCTCGGC 97047 28 100.0 33 ............................ CGGCGTCCTGACGTTCGGGGTGACGGAGGATGG 96986 28 100.0 33 ............................ CTGCTCGACCTGAGCAGCGGTCGCCATGACTAC 96925 28 100.0 33 ............................ CCCGAGACGGGCTCCCTCCTCGTCCGCCCAGGG 96864 28 100.0 33 ............................ GGCGCGGATCACGAACGAGGTTCGGTACCTGCG 96803 28 100.0 33 ............................ CAACTACCCGGGCCACTCGGGTGTCGACATCGC 96742 28 100.0 33 ............................ GTACGACCTGGAGGCGCAGGGCTTCGAGCCCGA 96681 28 100.0 33 ............................ CCGAGCGGCCCGCGAGCGCTGACCATGTTCCAC 96620 28 100.0 33 ............................ GCGCGTCCGTGACCTCGCCGCCGACGGCGTGTT 96559 28 100.0 33 ............................ GGGCCACGTCCGGGACATGATCAGCGGCAAGCT 96498 28 100.0 33 ............................ GGGACAGCTCGACGCCCGCCTCGCCGCCGTCTT 96437 28 100.0 33 ............................ CGCGTACCGCGGGCTGCGCGACAAGATCACCGG 96376 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 33 GTGCTCCCCGCGCAAGCGGGGATGATCC # Left flank : ACATCTCTCGCTACTCCGAGGAGCCGGTTTCCGGCAGAACGGTCATTGCCCAGATCCCTGCCGAGCAGGTCTCCGGTCGAGGCGGCGCCGTGGCGGCGGGCGAGGCGGCTGTCGTGGATCACCCGCGCCGCCCGCACAGCCAACGCGTCGAGTCGGTTCTTGACCCGACCGACCGCGGCACTCAACTGCTGGGCCTCGGCGGGAGTGAGTCCGGCGCGGACGAGGGGGTCGAGACGGTCGATCACCCCCTGCAACGCGGCAAGCTCCGCACCCAATGGTGTGGTCTCGTTGAGTACTGCGACCATCTCTGTTCACCCCCTGACAGTGAAACGCCTTGATGTCGAACTGGTGTTCGATCTGGTTCCCACTTTAGGGCAACCTGCTGACACTTTCTGCGTCCATCCACACCCACCCCAAACGGGTCCCGTGAGTGATCGGGGCGTGGTAGAAAAGTGATGCCGAAACCGGTGAACGCCGTCTGTTTGCGCAGGTCAGCAAGT # Right flank : CCGTTCCGAGGCAGGGTGCAGCTGACCGTGATCCATTCCCTACACGGCGGGTCTGTGCTTGGGTGCGGTAACAGCCGCAGATCGAGCACCTCGCCCGTCGACTACTCAGAGCCGCCAGCGAACCTCCGGCAGGCCACTAGAGCGCGGTGAAGCCGCGTCCAGATCGCAACGCCAGCGTTCGCCAGGAGAAGAGCCTCCACACCGGTCAGACCCCCTGGTTTATCTGATCTAGTCTGGAGATATGGCGACGGTGGTGCACGACTTCGATTGGCCCGACCGGCTCGTGGTGGGAACGGTCGGCCCTCCGGGGCATCGCGCGTTCTACCTGCAGGCTCGCGACGGTGAACGCCTGATGAGCGTCGGGCTGGAGAAGGAGCAGTCGGCCGTGCTCGCCGATCGGCTCGACGAGTTGCTCGACGAGCTCATGGCGATGGACGGCAATCCCGCCAGCATCCCCGCCACCGCTCCGGACGGCCTCGAGGACCACGCTCCCCTCGACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAAGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAAGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35954-35377 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJB01000013.1 Aeromicrobium sp. PE09-221 13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35953 28 100.0 33 ............................ ACCCGGCGGTGTATCCGTTATTCGTGCCGTGCC 35892 28 100.0 33 ............................ GATCGCCCCACCGGCCTCGGTGCCGGACGTCAG 35831 28 100.0 33 ............................ AGTTCGCCGAGATCCATGCTCTACTCCTTCAAC 35770 28 100.0 33 ............................ GCACTTCGTTCGCGGCGTGAAGGTCCAGCTCGG 35709 28 100.0 33 ............................ AGCTGCACCTGGGCACCGGGCGTGTGCTCGACC 35648 28 100.0 33 ............................ AGTCGGAGGCTGACCCAATCTCCGGTGGCGCGG 35587 28 100.0 33 ............................ TCAGCGGGCTGCCGGACGGGAAGCCGCTGGACG 35526 28 100.0 33 ............................ CGTCCGCATGGTCGCCGCCGGAGCGTGCAGCCG 35465 28 100.0 33 ............................ CACCAGGCGACCGCGGCATCCGCGTCGGCCAGC 35404 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GGATCATCCCCGAGTGCGGGGAACAGAC # Left flank : GGGAGGGGCGGTTGGGGGGTCGGGCTGGGTGCCGGACGTCA # Right flank : ACTTGTTGACCTGCGCAAACGCTGGCGGTTGACCGGCTTCAACATCACTTTTCTACCACGACCCCACCACCTGCGAGACGAGTTGGGAAGGGTGTGGATGACGCCAGAAAATGTCACCCGGCTCCTCTACAGTGGGAACCAATCGAACATCCGTTCGACGTCAACTGGTTTCGCTGGGAAGGGGGTAGACGGGGATGGTCGCGCAGCACATCGAACCCGCCACACCGCTAGCAGCCGAGCTTAATGCGCTGCAGACGGTGATCGACCGTCTCGAACCCCTCGTCCGGAACGTACTCACCCCCACCGAAGCCCAACAGGTCACTCAAGTGGTGGGACGGGTGAAAAACCGCCTCGACGCCCTCACCCTCCGCGCAGCACGGGTGATCCACGACAGCCGCCTCGCCCGCCGGCAAGGCGCCGCCAGTACCGGTGATCTGCTCGGACGTGACCTGGGGAATGATCGTGGCGCGGGGAACCGACTCCTCGGCGTCGCCCGTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCATCCCCGAGTGCGGGGAACAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 1624-2751 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJB01000018.1 Aeromicrobium sp. PE09-221 18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1624 29 96.6 32 ............................A CGACGAAAACGCCCCTCACCCAGACCGGGGTG 1685 29 96.6 32 ............................T TCCCGATCCACGCACCAGGCGGTTTCCGAAGA 1746 29 100.0 32 ............................. GAGACCGCCGACCTGGGCCCCGAGAATCACTT 1807 29 100.0 33 ............................. TAGAAGCTGCTGAGCGGCTCGGGGTCAGCCTCA 1869 29 96.6 32 ............................G CCGACATGGGTGGCGGCGTCCTCGCCGACAGC 1930 29 100.0 32 ............................. CCGCCGCGCACTTTTTTTCCCTCCCCCGCGGT 1991 29 96.6 32 ............................G GTTCTCCCCAGCCTATCCCCGCCCTCTTCCAT 2052 29 100.0 32 ............................. GACGGCATCACCCGCGAGCGTCATGCCGAGGT 2113 29 93.1 32 ................G...........T GTCAGGTCGCACCAGATCACCCGCTCGGGGAT 2174 29 96.6 32 ............................G GGACGGATACGGTCGATCAGCCACGATGCGAA 2235 29 100.0 32 ............................. TGGAAGGCCACGGTCGGCACCGCCATCCACGC 2296 29 100.0 32 ............................. GACAAACTGATCCACAACCTGAACAAGCTCCC 2357 28 93.1 32 ...........G.....-........... GTGGCCGCGAGGGACGCGCTGGCGACCGAGTT 2417 29 100.0 32 ............................. GGGTGGACCAGACTGTCGGTCGAGCGATCTAC 2478 29 96.6 33 ..........................T.. AAGACCGCCCATCGTGCAGCTCTTCGCCCTCGA 2540 29 93.1 32 ..........T.................G GACGAGAACGGCGCTGTCGTCGGACGGGAGAC 2601 29 96.6 32 ..........T.................. TCGCCGGACTTCTTCTCGACCTGTTCTGTGCG 2662 29 96.6 32 ..........T.................. TGCTGGCACGCGAGCTTGGCGTCACTGCCGAG 2723 29 93.1 0 ..........T.................G | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.1 32 GTGCTCCCCGCACGAGCGGGGATGATCCC # Left flank : ACTTCGCGGGCAACACCGAGCAACCGGTTTCCGGCGGTGCGGTCGTTGCCCAGATCCCTGCCGAGCAGGTCCCCGGTCGAGGCGGCGCCGTGGCGGCGGGCGAGGCGGCTGTCGTGGATCACCCTGGCCGCACGGACAGCCAACGCGTCGAGTCGGTTCTTGACCCGACCGACCGCGGCACTCAACTGTTGCGCGTCGGCGGGGGCGAGCCCGGCGCGGACGAGGGGGTCGAGTCGGTCGATCACCGCAGCCAACGCGGCAAGCTCGGCACCCAGTGGTGTGGGTTCGTTGAGTACTGCGGCCATCTCTGTTCACCCCCGATTAAGAAACCTATCGGTGATCGAACTGGTGTTCGATCTGGTTCCTACTTTAGAGGAGTCCGCTGACACTTTCTGCCGTCATCCACACCCACCCCAAACGGGTCCCGTGGGTGATCGGGGCGTGGTAGAAAAGTGATGCTGAACCCGGTGAACGCCGGATGTTTGCCCAGGTCAGCAAGT # Right flank : GGCGGCGGTCGGGACGTGACGTGACTTTCCGTACGCGAGAGGTGGGTTATCACGTACCTATCCCGGTCACGTGCGTGATAGCTCGCCGCCCGGCGTGAATCCGGTGCCCGTTGCCACGTGGTAGTCGTGATCGGACACTAGGGTGGCGACATGACCGCAGGCACTCTGGGAACCAGTGGGATCGACGTCAGCGTCGTGGGGCTCGGCTGCAATGCCTTCGGCGCCCGCATCGACGCCGAGCGCACTCAGCAGGTGGTCGACGCCTGTTTCGAGCACGGTGTGACTTTCTTCGACACGGCCGATGTCTATGGCCGGGGGCAGAGCGAGGAGCTGCTCGGCCGCGCCTTAGGTAACCGTCGCGACGAGGTGATCGTCGCGACCAAGTTCGGCATGGACCTGCAGGGCCTGAACGGTGACGACGGGGGATCACGCGGCCGCCCGGACTATGTCCGGAGGGCGTGTGAGGCCAGTCTTCGACGACTCGGCACGGAGGTGATCGA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGAGCGGGGATGATCCC # Alternate repeat : GTGCTCCCCGTACGAGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63653-62644 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJB01000025.1 Aeromicrobium sp. PE09-221 25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63652 29 96.6 32 ............................G CCCGCCGAACGGGCGTCCGCGACCCGCGCAAT 63591 29 100.0 32 ............................. CCATCGTCGCCGTCGGCGGCGCGTTCTGGGCG 63530 29 100.0 32 ............................. CCACTCACCGGTCGCGAAACGCAGGGCGAGCG 63469 29 100.0 33 ............................. ATGGGCTCCTCGGCCTGGCAGTGGCAGGACTAC 63407 29 96.6 32 ............................G GAGAAAGAGCATGCACAGTAACGCGACCGTTC 63346 29 100.0 32 ............................. CTCCTCGTCGAAGCCAACTAGGCCCAGGCCCT 63285 29 96.6 32 ............................G CGCAAGGAGGTCGCGCACGTCGAGGAGATGGC 63224 29 96.6 33 ............................G GACAACATCACCCGGGTCAATGCCCACAGGTCG 63162 29 96.6 32 ............................G TGACCGCTTCGGCGTGGATATTGCCCTGCGGC 63101 29 96.6 32 ............................G CATGGCGACGATGACGATCGGTGAAGGCGCAC 63040 29 100.0 32 ............................. CTCCCGGGCATCGTGGGCGGTGACGACCAGTG 62979 29 100.0 32 ............................. TTTCGGTCGGGGTGGATCTTGTCGAGGATGAA 62918 29 100.0 32 ............................. ATCATCGAGACCAATCTCCAGCAGATGCGTCG 62857 29 96.6 32 ............................G TGTTGCCCAGGATTCTGGGTAGAACAACCATT 62796 29 100.0 33 ............................. ACCGGCGTCATCGGCGCCCGCGAGGGTGACCGG 62734 29 96.6 33 ............................T GCCATCACCGAGAACGCCAAGGCCATCGTCGCC 62672 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.4 32 GTGCTCCCCGCACGAGCGGGGATGATCCC # Left flank : ACATCTCTCGCTACTCCGAGGAGCCGGTTTCCGGCAGAACGGTCGTTGCCCAGATCCCTGCCGAGCAGGTCCCCGGTCGAAGTGGCGCCGTGGCGGCGGGCGAGGCGGCTGTCGTGGATCACCCGCGCCGCCCGCACCGTCAACGCGTCGAGCCGGTTCTTCACCCGACCGACCGCGGCACTCAATTGCTGGGCGTCGGCGGGAGTGAGTCCCGCGCGGACGAGGGGGTCGAGTCGGTCGATCACCCCCTGCAACGCGGCAAGCTCCGCACCCAGTGGTGTGGGTTCGTTGAGTACTGCGACCATCTCTGTTCACCCCCTGACAGTGAAACCTCTTGGTGTCGAACTGGTGTTCGATCTGGTTCCCACTTTAGGGCAACCTGCTGACACTTTCTGCGTCCATCCACACCCACCCCAAACGGGTCCCGTGAGTGATCGGGGCGTGGTAGAAAAGTGATGCTGAAACCGGTGAACGCCGGATGTTTGCCCAGGTCAGCAAGT # Right flank : CCGCATGTGCGTCGGTGGCGGCCAGGGCAACCACAGAACCACATCTTTCGTCATGCGCGTCCGATCCGGCCCGGGGGAGGGGAGGTGAGTAGCGCCGAGCACCTACGATGTCGTGGTGACTGCAACCGTGCTTGCGGTGCTGGAGTTCTCGGGCATCTTCGTCTTCGCCATGACCGGTGCGCTCGTCGGGGTCCGGCGGGATTTCGACATCGTCGGCCTCGTGGTTCTTGCGATGATGACAGGACTCGGCGGAGGGGTTCTCCGCGATGTGTTGCTCGGCGTCAATCCTCCGGTCAATATCGGCAGCTGGGAACGTTTGTTGACGGCGACCCTCGCGGCCGCGCTCATCTTCTGGCAGCACGACCGGGTACTGCGTCGTGAGCGCGTCGTGATGTTGCTCGATGCCGTCGGTCTCGCGACTTTCTGCGTCACCGGCACGATTGCCGCGTTGAGTCACGACATCGCCCCCGCGACGGCGGTGTTGCTCGGGGTCCTCACCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10386-10719 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJB01000044.1 Aeromicrobium sp. PE09-221 44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10386 28 85.7 34 ..............CAG.......G... CTCACGGCCCAGGCGTCCTTAGCTACGGCTTCGG 10448 28 100.0 33 ............................ GCGGTCGTTCTCGATCACGTGGGATGCGAGCAA 10509 28 100.0 33 ............................ ACCCGGCGGTGTATCCGTTATTCGTGCCGTGCC 10570 28 100.0 33 ............................ GATCGCCCCACCGGCCTCGGTGCCGGACGTCAG 10631 28 100.0 33 ............................ ACCCGGCGGTGTATCCGTTATTCGTGCCGTGCC 10692 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.6 33 GGATCATCCCCGAGTGCGGGGAACAGAC # Left flank : ATCGTCGACGCTGGAGACGGGGATCGTTGCGATCTCGTCGCCGGTCAGCGGAGAGACGGTACGTCGCGTCTCGCCAAGGGAGGTGCGGACGAGTGCGGTGAGCTGCCGGACTCGGTCGTCCGACACCGGGTATGTGACCTGGCTGACATCGAGCATGTCGATCAGGATACCGCGAGTATCTCAAATGTGACACGGGTGATGTCACATTCTGAGGACGAGTACACGTCCCGAACGACAAGACGTGCGATGGGGCGGGACGCGCGGGCGGTGAGTCATCGCGCGGTTTCACCGTCGGAGTGCGTAGTAGCTCACCGCCTGCCAGCAGCGATCATTCATCGCACCAAGAGGAGCCTCACGTGGCGATGCGTGGGAAATCGCCCCGCGCTGCACGAAGGATGTGGTTCCGTGGTTGCGCTGGCTACCACGGAACCACATCCTTCGTTCATCCGCGCGTCTGCGGGGAGCACGCGCGGATCACGGCGGCGGTCTTCGTCGCGCCC # Right flank : GATCGCCCCACCGGCCTCGGTGCCGGACGTCCGGG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCATCCCCGAGTGCGGGGAACAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 153601-151064 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJB01000024.1 Aeromicrobium sp. PE09-221 24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 153600 28 100.0 33 ............................ GACCGGGGCGACATGGGTGATCTGGTCGCCGGC 153539 28 100.0 34 ............................ CCGTTCAGCCTGGGCCGGGTCGGTCTCCATCAGC 153477 28 100.0 33 ............................ GCAGGTTCCACGCGTCGATCGGAAGCCATGTCT 153416 28 100.0 33 ............................ CGCCGAGGCCATGGCCGCACTGGACTGGAACCT 153355 28 100.0 33 ............................ CGGCGGCTCGTCGGTCGCTGGCTGGGTTGCTGG 153294 28 100.0 33 ............................ GGCGAACGCTGACAGTGCCGTCGAGGATGCACG 153233 28 100.0 33 ............................ CGTACTGCGTGAGGGCGTGCGCTTTGATACGGG 153172 28 100.0 33 ............................ GTATCCGCTCGGGTAGTGCGTCGCCTGAGTGAA 153111 28 100.0 33 ............................ CGCCAGGCCCACACGCGCGTCGGTCGGGATCTT 153050 28 100.0 33 ............................ GGGCCCACCGGCCCGGGTCGCCTACTTGGCCTC 152989 28 100.0 33 ............................ GATGACTGAGGGATTCAGCGCGTTGATCTGGGC 152928 28 100.0 33 ............................ CCGTGTACCCGCTGACGCCGACCTCGCGGGCGA 152867 28 100.0 35 ............................ GGTGCCCTTGATCCGGTCCCAGTGCTTGATGATCA 152804 28 100.0 35 ............................ GGTGCCCTTGATCCGGTCCCAGTGCTTGATGATCA 152741 28 100.0 33 ............................ GCTCGCGCATCCACTGCACGACCGAAGAGACTC 152680 28 100.0 33 ............................ GGCGTCGAAGGCGTCGTGGTGCTGGGCGGCCCA 152619 27 96.4 33 .....................-...... GTGCAGGTGGGGGCCCGTGGATCGTCCGGTGGA 152559 28 100.0 33 ............................ CAACGTCCCGAACATCTGGGCACTCGTCCAGGC 152498 28 100.0 33 ............................ GACCAGCGTCGCCGACCTGTCCCGTCAGCGACG 152437 28 100.0 34 ............................ GAACTCCTCGGTCAGGGTGGTGACTTCGTCGACG 152375 28 100.0 33 ............................ CAACGCCGGGCCGGCGAAGGACATCGGCGACAA 152314 28 100.0 33 ............................ CGCGGAGCCAGAGCGTTCGAAGATTCATCATCG 152253 28 100.0 33 ............................ GGAACTGCAGGACGCACGGTGGCAGACCACCAA 152192 28 100.0 34 ............................ GGCGAACGACGCGCGGCTCGCACTGGCGGGCCTG 152130 28 100.0 34 ............................ CGGCCCGGTCTGCGGATGGTGTGCTGACGGGCTC 152068 28 100.0 33 ............................ CTGGGCCGCCGCGAACTTCCGCAACCCCCAACC 152007 28 100.0 33 ............................ CTGGGCCGCCGCGAACTTCCGCAACCCCCAACC 151946 28 100.0 33 ............................ TGAGCCCTCGCGCGCGGGACGCACATAGACGTC 151885 28 100.0 33 ............................ GACATCGTCGGTCTCGTCGTCCCACATGATCTG 151824 28 100.0 33 ............................ GGCGGAGATCCGCGACGTGCGACCGTCGTGGGA 151763 28 96.4 33 .....................A...... GGCCAGGTCCGAGGGGCGAGACCTCACGGACGA 151702 28 96.4 33 .....................A...... TGTCACGGACGGAACGTTCGGGGCGGTCCGTGC 151641 28 96.4 33 .....................A...... TGTCACGGACGGAACGTTCGGGGCGGTCCGTGC 151580 28 96.4 33 .....................A...... GTGACAGAGGACCAAGGCGCGCAGATTGTCGAA 151519 28 96.4 33 .....................A...... GGTCCTCGACGCGATGGCCAAGCCTGCACTCAT 151458 28 96.4 34 .....................A...... GGATTGCGCGCCGGTGGTGCTGCGCTGCCCGGCC 151396 28 96.4 33 .....................A...... CCACGCCGGTCGTGGCGGCTGGCGTGGCCTGTC 151335 28 96.4 33 .....................A...... GCCAACGGCATCGAGGTCAAGAAGACCGCGAAG 151274 28 92.9 33 .............G.......A...... TCGGAGAGGGAGGCGGCGTGAATGCCGAAGATC 151213 28 96.4 33 .....................A...... GACGTCGAGCCAGGCGTTCGACTCGACGACCTC 151152 28 92.9 33 .............G.......A...... CGACCCGCCTCGCGATTTCGCGTGTAGGAACTT 151091 28 85.7 0 .C.......A...G.......A...... | ========== ====== ====== ====== ============================ =================================== ================== 42 28 98.5 33 GTGCTCCCCGCGCAAGCGGGGGTGATCC # Left flank : ATCACTGGGGTGCCGGCGAGGTGCTGCTGGAGCTCTTCGAGAAGCTTGTGGAGCACACTCTCATCCAGCCGACCTTCGTGTGCGACTATCCCGAGGCCGTCCGGCCCCTGGCCAAGAAGCACCGTACGACACCGGGTCTGGTCGAGGCCTGGGACCTCATCATCAACGGAGTCGAGTTGGCGCCCGCGTACTCCGAGCTCAACGACCCGGTGATCCAGCGCGAGCGGCTGGAGCAGCAGGCGCGGCTTGCAGCTGCAGGTGACCCGGAGGCGATGGACGTCGACGAGGACTTCCTGCGCGCACTGGAGTTCGGCATGCCCCCCGCGGGCGGTATGGGCGTGGGAATCGACCGCCTCGTCATGCTGCTGCAGGGCATCGGCATCCGCGAGGCGATCCTCTTCCCGATCTCCCGCAGGGAGTGAAGCGGGAGTCGAGGTGCGCCTCGACTGAAAGTGATGCTAAAACGGGTTACAGCTTTGTATTTCTGCAGGTCAGCAAGT # Right flank : CGACCTCGTTTGCTGCGAGCAGCGGATGGGCGTGGTGGGAGCACCGGCCGGAACTCGGGACGACTTTACGAGGCGTAGGACTCCAGTGCCTCCCGCGCGAGCTGCGACAGCGTCTTGCCCTCGCGCTCCGCCCGTTCCTTCAGTCTGTCCCGGATGTCGGCGGGCACGCGAACGGCGATCTGCGGTGAGCGCGCGCCGACGCCGGTCAGCGATGGCCGACCCCGTTTGCGGTTGACCCTCTCGATGATCTCTTCGGCACTGTCCTCGTCAAGGGGCCGACCGTCGTGCAGCCGAATATCCTCGTGGGGACCGGCGTTCCGGATCTCTGCCTCCGGTCCGACGATGTAGTCCTTCGGATCGATCTTGCTCATGTCTTGCTCCTGTTGCGCCACTCGTTCGGTGTGCAGTGGATGACCGCCAGGCCGCCAGGGCGGCGGTTGTCGGGGCCGCGATGATGTACAAGTCGATCCCCCGGTCATCGGTGCCGATGTAGACCAACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAAGCGGGGATGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 169013-168069 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJB01000024.1 Aeromicrobium sp. PE09-221 24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 169012 29 100.0 32 ............................. GCCGTCGATCCCTGTTCCGGCTTGGCAGCAGG 168951 29 100.0 32 ............................. TCGGCATGGCTTGCATCGGTTCGTCATGAGCT 168890 29 100.0 32 ............................. CTGCCCCTGCTGACCCTCGGCAGGCACCAGTG 168829 29 100.0 32 ............................. ACTCCCCAGGCCACCCGATACGCCGTGACATT 168768 29 96.6 32 ............................G GTCTTACCGGCCGCCGAGGCCGATCCGCCGAA 168707 29 100.0 32 ............................. TCCGCAGTGAAGCTCTTAGGCAATCGCGAGAA 168646 29 100.0 32 ............................. CGTTCACCAGCGACCATACGCCTCCACAGGCA 168585 29 100.0 32 ............................. CAGTGACGGCCCGCGAACGAGGCGCTCATGAC 168524 29 96.6 32 ............................G GTGGTCGTCTTGCTCCGACGCTCTTCTTCATT 168463 29 96.6 32 ............................G CCGAACGCGAGACCGTTGACGAGAACGTCGCC 168402 29 96.6 32 ............................G CGGTGATCGACGTTGCCAGCCGTCGCAAACCG 168341 29 100.0 32 ............................. GACGAATCGAGAGGACCTACCCCATGAATGAG 168280 29 100.0 32 ............................. GTCTTCTTCGCAGGCATCGACAAGATCGCGTC 168219 29 100.0 32 ............................. CCACGCCGAGGGGTCGACCACCAGGGCCCGAG 168158 29 96.6 32 ............................G AAGGATGACGCGATAGCCCGGATGACCCGCCA 168097 29 82.8 0 ......................A.GGA.G | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 GTGCTCCCCGCACGAGCGGGGATGATCCC # Left flank : ACATCTCTCGCTACTCCGAGGAGCCGGTTTCCGGCAGAACGGTCATTGCCCAGATCCCTGCCGAGCAGGTCTCCGGTCGAGGCGGCGCCGTGGCGGCGGGCGAGGCGGCTGTCGTGGATCACCCGCGCCGCCCGCACAGCCAACGCGTCGAGTCGGTTCTTGACCCGACCGACCGCGGCACTCAACTGTTGCGCGTCGGCGGGAGTGAGTCCGGCGCGGACGAGGGGGTCGAGACGGTCGATCACCCCCTGCAACGCGGCAAGCTCCGCACCCAATGGTGTGGTCTCGTTGAGTACTGCGACCATCTCTGTTCACCCCCTGACAGTGAAACGCCTTGATGTCGAACTGGTGTTCGATCTGGTTCCCACTTTAGGGCAACCTGCTGACACTTTCTGCGTCCATCCACACCCACCCCAAACGGGTCCCGTGAGTGATCGGGGCGTGGTAGAAAAGTGATGCCGAAACCGGTGAACGCTGTCTGTTTGCGCAGGTCAGCAAGT # Right flank : TCACTCCTTGGCGGCGATGCAGGCGGCTACGCGTGACGTGTCCGGGCGGTGCGTTATCCCGCAGTTTGCCGGTTGAAATGCGTGATGGCTCACCGCCCGAGTCACGAGCCGGCGTGCTTTTTCTCGTGTGGGGCTGCCGCGAGCTCCGCTAGGACGAGTTCACTTGGTCGCGTCGAGCTCCCGGCGGATGATGTCGACCCGGTTGGTGGTGATGGCGTCGACGCCCATCCCGGCGAGGCGTCTTGCGATATGAGGGGAGTCGACGGTCCACGCGGTGACGGTCTTCCCGCGGTCGTGGATGCGGTCGATGACGCGGCTCGTGAGCAGGGTCGCGTCGAGATGGAACTCGTCGTAGCTCTCCAGATCGGCCGTGCTCGGACGGCGGACGGCGGCCAAAGCCGTCCTCGCACCCGGGATCGCGCGACGAACCGCATCGATCAGTGGTCGCTGGAAGCTCAGGAAGGTCACCTTCGGTCTTCGGCCGACGGTGGCAGCGAGTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21989-20675 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJB01000005.1 Aeromicrobium sp. PE09-221 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 21988 29 100.0 32 ............................. TGCCAGTCGTACTCGCGGAACGCCTTGCCGCG 21927 29 96.6 34 ............................G GCGCATCGACATATTGAGGATCTCGGCTTCCGTG 21864 29 96.6 32 ............................T TGAAGGAGCTCTTCGGCAGCGACCTAGGTGGG 21803 29 96.6 32 ............................G CTCACCAAGCCGAACGACGGTCGCAAGATCGA 21742 29 96.6 32 ............................G CGTCAGCGTCAGCAGCTCGGCCTCACGGCCTG 21681 29 100.0 32 ............................. CGGCCCCAGCTCATGGCTGTCATGGGCGACGA 21620 29 100.0 32 ............................. CAGCGCAGGATGCTGGCGATGGTCTTGCCGGA 21559 29 96.6 34 ............................A GTATTCCGAGTCGGACTCCACGCGATCAAAGCTT 21496 29 100.0 32 ............................. CGACCCCCGTAGGTGCCGATCCGCATCCGGGG 21435 29 100.0 32 ............................. GACTCCCCGCTGCCGATCGAGTCCTCTTGGGA 21374 29 100.0 32 ............................. GTGAGGATCGTCTTCACTTGACCAACGCTATT 21313 29 100.0 32 ............................. GTGTCGCGCCCACCAGCATCGCCCCCGTCACC 21252 29 100.0 32 ............................. CTCAACGGCGTTCGGGTATTCGTCCATGTCCA 21191 29 96.6 32 ............................G GCCCGTTCCGGTGCTCGTGTGGATTCGACTTA 21130 28 96.6 32 .....-....................... ACCACCTCGAGCAAACCGGCCACTGGAACGCA 21070 29 96.6 32 ............................T TTGAAGGCGTGGCGATCATCGGCAACAAGCTC 21009 29 96.6 32 ............................T GTGGTCGAGGTCGTAGCAGCCGATGCCGTCGC 20948 29 100.0 33 ............................. AGGCCCCGTCGCGGCCAGCTCGCCACCTGTCGA 20886 29 100.0 32 ............................. CGACCGCGCTCACCCTCGTGGGTGTCGCCCTG 20825 29 100.0 32 ............................. GACAGCGACTCGGCCGCGGTGCGTGCTTGCTT 20764 29 100.0 32 ............................. ATGGCCGACGACATCGCGGATCGGCTCTCCCT 20703 29 93.1 0 ..........T.................A | ========== ====== ====== ====== ============================= ================================== ================== 22 29 98.3 32 GTGCTCCCCGCACGAGCGGGGATGATCCC # Left flank : TCTCTCGCTACTCCGAGGAGCCGGTTTCCGGCGGTGCGGTCATTGCCCAGATCCCTGCCGAGCAGGTCCCCGGTCGAGGCGGCGCCGTGGCGGCGGGCGAGGCGGCTATCGTGGATCACCCGCGCCGCACGGACAGCCAACGCGTCGAGACGGTTCTTCACCCGACCGACCGCGGCACTCAACTGTTGCGCGTCGGTAGGAGTGAGTCCCGCGCGGACGAGGGGGTCGAGACGATCGATCACCCCCTGCAACGCGGCAAGCTCGGCTGCTACCGGTGCGGTGGCCTCGATGTGCTGCGCGACCATCTCTGTTCACCCCCTGACAGTGAAACGCCTTGGTGTCGAACTGGTGTTCGATCTGGTTCCCACTTTAGGGCAACCTGCTGACACTTTCTGCGTCCATCCACACCCACCCCAAACGGGTCCCGTGAGTGATCGGGGCGTGGTAGAAAAGTGATGCTGAAACCGGTGAACGCCGGATGTTTGCCCAGGTCAACAAGT # Right flank : TGGGGCTCCGCTCTGTTCCGGCTGCGCGCCACGCGCCGCGACTGTCCGATGTCATCCGGCCGCGTGCGCGGCGGCGATGATGCGATGGAGCAGGGCGTTGGCCTCATCGAGGTCGTCCTCGGTCATGCCGAGCCGTTCGAGCATGGCCGTCGGCACGTCGAGAGCCCTGGAGCGGAGCGCCCGGCCATCCTCGGTCAGAGTGATCTGCAGCGAGCGCTGATCGTGGGGCGAGCGGACCCGCTCGACGAATCCCATCTGCTCGAGTCTCTTGACCAGTGGCGAGGCGGTGCCTGGATCGAGGGACAGCGTCGCACTGAGCTCACTCAGGCCGAGCCCATCGTCCTGCCAGAGCGCGAGCATCACCAGATACTGCGGATGGGTCAGCCCGAGGGGTTCGAGAGCGGGCTTGTAGGCGGCGATCACCGAGCGGGCAGCCACGGCCAGCGCGAAGCACACCTGTTCGTCGAGGGCGAGGGGATCGCGATCGGCGGGCACGCGGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //