Array 1 563-1490 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCYG01000336.1 Pseudomonas aeruginosa strain 117 scaffold_335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 563 28 100.0 32 ............................ GATTTCGAAGTGGACTGGCGCGGCTCCGACAT 623 28 100.0 32 ............................ GGGAATGCGCAGTTCTCGCGGATTTCGCTGAT 683 28 100.0 31 ............................ AGGTAGGAAATTGTCGCACGACTCCATCCAT 742 28 100.0 32 ............................ TTGAACGCTTCGTTCATCTGTTCGCCGGACGT 802 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 862 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 923 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 983 28 100.0 32 ............................ AGAATGGCCTCCAGCCCCAGCGAATGGCCTGG 1043 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 1103 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1163 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1223 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 1283 28 100.0 32 ............................ CAAGGTCGTCACCAGTACTTCTTGGGGCGGGC 1343 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1403 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1463 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4097-5444 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCYG01000129.1 Pseudomonas aeruginosa strain 117 scaffold_128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4097 28 100.0 32 ............................ GATGGCATCAGACTGGCCGGCCAGCCGTCGCC 4157 28 100.0 32 ............................ TAACCACCCAGCCCGGTTCTCCGTGGCATCAC 4217 28 100.0 32 ............................ GGTAAGCCCGGCCGCGTTGCGCAGAAGCAGCA 4277 28 100.0 32 ............................ ATAATGCCGGCATACTTGGAGACCGTATTGGA 4337 28 100.0 32 ............................ TCGGCCCTGGCGTAGAAGTCGCGCGGCGTCTC 4397 28 96.4 32 .........................C.. AGCGCGCAGGGACCTGATCGACCCTCAGTCAA 4457 28 100.0 32 ............................ TTGACGACCGGTTGGCGCAGGAAGTCATCCCA 4517 28 100.0 32 ............................ TAGAGGCCGCCCGTATGCTGGTCGCGGACATT 4577 28 100.0 32 ............................ ACCAGCGCCATCAGGCGTGCGGGATGGTCGGC 4637 28 100.0 32 ............................ TGCAGCTTGTCCAGGATCTGCATCATCGGCAG 4697 28 100.0 32 ............................ AGATTGCCAAGCAAGCCCTGTCCGGATGAGCG 4757 28 100.0 32 ............................ CTGCCATGGGGATAAGCGATCACACCGTGCAG 4817 28 100.0 32 ............................ TGCACCGCGGCCTGATCGGTGCTGCTGATGTC 4877 28 100.0 32 ............................ TACTACAGCGCCCCGTTGAATTCCTCCGCCTC 4937 28 100.0 32 ............................ AGTTGCGCGGAACTGCTCCAAACAACGAGCCC 4997 28 100.0 32 ............................ ATTGGCTGTTGAAGCTCAGGATCGATAGTCAC 5057 28 100.0 32 ............................ AAGGGAAAGTTCCTCTGCGGCGTCCTGGACAA 5117 28 100.0 32 ............................ GAATCGACCGACGAATACCGCGAGGGCGTCGA 5177 28 100.0 32 ............................ TTCTTCGGCTCGAACAGCGCAATCCAGACTCC 5237 28 100.0 32 ............................ AGTGCGCCATCGTTCGCCAGGAAAAGCTCGCA 5297 28 100.0 32 ............................ GACCCCGCCTCCAGGCCGGAGCCACCTGCCTG 5357 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 5417 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17280-16591 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCYG01000014.1 Pseudomonas aeruginosa strain 117 scaffold_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17279 28 100.0 32 ............................ ATTGATCACGGCGAACGTGCCGGGCAGGAGTG 17219 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 17159 28 100.0 32 ............................ TGGACGACCTGGGTGTCGTTGGTTGACGAGTG 17099 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 17039 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 16978 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 16918 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 16858 28 96.4 32 .............T.............. ATCAGGTACAGCACCAGGGCACCGAAGACGTT 16798 28 96.4 32 .............T.............. TCGGCGAGGCGGTCGATCATGCGAATCAGCAA 16738 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 16678 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 16618 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.2 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGKGACGCCCCCGGCCWGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //