Array 1 84842-84591 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKI01000013.1 Ruminococcus sp. TF11-2AC TF11-2AC.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 84841 37 100.0 35 ..................................... AATACTACTTTCAAATACTTTGCTCGTTCTCTAAT 84769 37 100.0 33 ..................................... GTTTAGGATTTCAATCCGAAGATTTCCTTCACA 84699 37 100.0 35 ..................................... TAGTTGTTGCTTATTTGACTCTTAGAATATTATCA 84627 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 100.0 35 GTAGAAATGAAAAGCCCGAGACACTGGGCATTGCAAC # Left flank : ACTGGAGTGTTTATGGACACTGCCTGATTACCAGATGCTTTACACGCAACAGATATCTGAATGCTTTGTGGAAAGGGGCAGGATTCTGTTTTTCAACAGCATTTTCAAATGAACTTACCAGAATTTTAAATGTTTCCTTTGTCAGAGGTAAACATGCCAGATAAGTTTTGATGATGTTCATTTGTTTCGGCATTGAAAAGTTTCTTTCAGTGCCGGAACAGATGAAAAATTCTCTGTATGAGGCATAAACGTGACAGGGACTTTATCTATCTGAAACAATGTGTCTAGGGTATGGTTATCGAAAAAAAAAGAATGTGAGATGGGTTATTAAAAGAAAGTTTATGTTGCATTTAGCGAGTGTTCGATATATACTTATGTTAACAGAAAAATGAGAAACCCAAAAACAACCAGAAAAATGAGTGATTTCAGAATATTCTGTGAATTACTTGCAAAAATGATGCTGAAAGCTATTGATTTTACTGATGTTGTGGAGGTATACC # Right flank : CAAAAGTGCTAATACACCAAGATAATGATATAAAAAGTAGAAATGAAAAGCCCGAAGTAGTTTAGCAACGGGATGTAAAAAGAGAATCATTAACTAAATAGGATTTATTTTCAGGAAAGGGATCAGAATAAAAAATTTGATCCCTTTTCTGGTATCATTGAAAATTAATAGAATTACTACGGAGAGTAGTTTTGAAAGCTTCAAGTATATGTCGTTAGAGTTTTCGGAATATGTGTGTTTCAATATACTTGTAAGGAATTTTCCTGACATTCAGGAAGGTTACCGAAGAAGTTGGAACTGTACATGGTATTCAAAGAAAGAGAGGAAACCGGATATGGCACAGATGGATAAAACTCAAAGAAACGCAATCAAACAGACTTTCAAAAATTACAGAAATATGACTTCTGATGTAAGAAGAACACTTGCATCTATAGGCATTCAAGCGGAGAAGAGGAAGAAACACTGGATACTTCGATATGGGAATAAAATTTTCATATGTC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAAAAGCCCGAGACACTGGGCATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2248-1994 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKI01000009.1 Ruminococcus sp. TF11-2AC TF11-2AC.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2247 37 100.0 35 ..................................... AAATTCATGTGTTGCTCCAATACCCTCATAAAGAT 2175 37 100.0 35 ..................................... CCTACATCATAGCCTTCATAGAAACCATCATCACT 2103 37 97.3 36 .....................C............... TTTTCAAGAGTGACCTGCCAGCACATTTCATTTCCC 2030 37 94.6 0 .......A.............C............... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.0 36 GTAGAAATGAAAAGCCCGAGATACTGGGCATTGCAAC # Left flank : TTCCGGTGGTCAGCGTCAGAGACTTGCCATTGCCCGGGCGCTTCTCCGAAAACCACAGTTACTGATCCTCGATGAAGCAACCAGTGCCCTCGACACCATAACAGAGGCAAAAGTCCAGAAAGCATTCTGCGAATTATATCCATTCATGACAATTGTGATGATCGCTCACCGCCTGAGCACCGTAAAACAGTGTGACCAGATTCTGGTGATGGAGCATGGTACGGTTGTAGAAAGAGGAACTCACAGTGATTTACTGAAAGGAAAGAAAGGTTATGCTGATCTGTGGTTACAGCAGAATAATGCTGTAGCTGCATAAGCAGCCAATAGAAAATATTCTGTTTATATTGCATTTGATGAGCATTCCATATATACTTATGTTAACAGGAAAATGGGAAACCCAAAAACAGACAGGAAAATGAATGATTTCAGAATATTCTGTGAATTAATTGCAAAAACGATGCTGAAAGCTATTGATTTTACTGATGTTCTGGAGGTGTACC # Right flank : ACAGAAAGTTCTAACCTTGTCTCCGGAAGGTTTAGGAGTAGAAAAGAAAAGCCCGAAGTAGTTTAGCAACGGGATGTAAAAAGAGAATCATTAACTAAATAGGATTTATTTTCAGGAAAGGGATCAGAATAAAAAATTTGATCCCTTTTCTGGTATCATTGAAAATTAATAGGATTACTACGGAGAGTAGTTTTGAAAGCTTCAAGTATATGTCGTTAGAGTTTTCGGAGTATGTGTGTTTCAATATACTTGTAAGGAATTTTCCTGACATTCAGGAAGGTTACCGGAGAAGTTGGAACTGTACATGGTATTCAAAGAAAGAGAGGAAACCGGATATGGCACAGATGGATAAAAGTTTTTAGACAATTATATGTGAATAAAGCTGGGGTGGGAATTCAATGAAAACGTATACTTACGATGAAGTTAATGTCTTTATTAAGGAACTTGAAACAGGAAGGGATGAAATTCAAAACAAAATATCTGGACTTAGAGAAAAACGG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAAAAGCCCGAGATACTGGGCATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 36619-38680 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKI01000033.1 Ruminococcus sp. TF11-2AC TF11-2AC.Scaf33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 36619 30 100.0 35 .............................. CTATGTAACTGATAACTAATCAACTTCGAAAAGCA 36684 30 100.0 34 .............................. GATTACGACAGGGGTAATTCTTATGCCAGAAGGG 36748 30 100.0 37 .............................. CTGTTCTGTCAGAAGTAAGAGATTTAAAGTCAAAAGA 36815 30 100.0 35 .............................. ATCGTCAGCCAGCAGATCATTGGCCGTTGGATTCC 36880 30 100.0 34 .............................. GTGTATAGCATATTACGGATGGTTCAAACATTCC 36944 30 100.0 35 .............................. AGAGCCAGGCGTAAACAGTTTGAAACGTTTACAGA 37009 30 100.0 36 .............................. ACACCGTAACTGTTAAAGTTACAGACGGAGAACAGA 37075 30 100.0 36 .............................. CGGAAAATACGGAGCCGGAGACATTGATGGAGTGCC 37141 30 100.0 36 .............................. GCCGTCCGTATGCCAGTACACATAGAACTCTGCCGA 37207 30 100.0 35 .............................. CTGGATTCTGAATGCGAACAATGGCGTTGGCAATG 37272 30 100.0 35 .............................. AAAACACTGTATTTACAGGCATTTGCGCAATTTTC 37337 30 100.0 34 .............................. GTGATATTCAAGTCGTGTATAATATTTCCGTCCA 37401 30 100.0 35 .............................. CATGTTTACTGCCTTCGATAATCAGCAAGCTTGCA 37466 30 100.0 36 .............................. CATATTTCCCGGCAAGCATACAAACAGCAATTAGCA 37532 30 100.0 36 .............................. TGTATCTGATCTGTTCGAGCATGGTTTCAGCCTGTG 37598 30 100.0 35 .............................. CAAGTAACTTCAAGGACTCAATAAATGAGTCCGTC 37663 30 100.0 36 .............................. GTACCTACAGGTGTAGAAATCATCGGATATCTGTAC 37729 30 100.0 38 .............................. TATGCAGCAGCTGCAGAACTGCCGGACATCGGCGTAAT 37797 30 96.7 36 ....................T......... GAGTCCGCTGAATCTACAAGACTATTTCCAGACAGA 37863 30 100.0 36 .............................. AGTATAGCAAAGGATAGATTTTCTAAAGTGGCTATG 37929 30 100.0 35 .............................. ACAATCGCAGAAGTGAACCGTATAAAGAATATTTC 37994 30 100.0 34 .............................. AACAGCTCGCCCGTCATAATGACCTGTTTCTCGC 38058 30 100.0 35 .............................. TTCATTAGGCGAATGGAATGAATATATTGAATATT 38123 30 100.0 36 .............................. GGATATCCGGATGATAAAAAAACGAAATTTGTCGGA 38189 30 100.0 36 .............................. AACAGGAGACGCACAACAGCAGACAAGATCACATCC 38255 30 100.0 35 .............................. GATGCTTTAAAAAAGCTGTCCGGGATGTCACACCT 38320 30 100.0 36 .............................. TCAAGGAGATACTGGGCTTCTTGGTATTGCCTGGAA 38386 30 100.0 37 .............................. AGATATGTAGCAGTGATTGTCGCAGAACCGGTCTTTT 38453 30 100.0 35 .............................. GAACCACCCTGGATTTGCTATGAGTGGAAGAAAGA 38518 30 100.0 36 .............................. TTCTGAAAGTCTACACCACTTACATCCGGATTCTCC 38584 30 96.7 37 ................T............. TATGTAAAATAATAAGAAGAATTCACTTCTGGATTTT 38651 30 93.3 0 ................TA............ | ========== ====== ====== ====== ============================== ====================================== ================== 32 30 99.6 36 GTATTAATAGAAACATCGTGGAATGTAAAG # Left flank : TTGGCGAAAAAGAATATGAGGGATTCAGAATATGGTGGTGAGTTATGTATATAGTATTAGTTTATGATGTAAGTCAGGCAGAAAACGGTGCAAGACGCTGGTCAAGAATTTTTAAAATATGTAAAAAATATCTGACGCACATCCAAAATTCTGTATTTGAAGGTGAATTGTCAAAAGGACAGCTGGCACAGCTGCAAAAAGAATTAAAAGAGTATATTGATAAAGAATTAGATTCTGTAATTATTTTTAAATCTCGGCAGGAAAAATGGTTGGATAAAGAATTTTGGGGTAGGAAGGATGATTTAACGAGTTTCATATTATGATTGTCGACGTCAGATAGAGTAAAAACTTCAGGAGGTCGACAATGCTTGAGATATCAGGAAAATTTCAAAAATGAGAGCTGTCCAGAAAGATAAAAATAAGTATAAAAATAATGAAGTGACAAGATTGACAGAAAGTGGTAAGATTATATCCGTATTGTAAGGATGAATAGACGACGG # Right flank : GAAATTTTGATAGACGAATTCAATAACAATATGTTACACTTTATGAAAGTTAGAGTTTAACAACCGTAGCAAGAATTCCCTCACATCTATAGGTGATGGGATGAATTGCACATTCGAGCATATCTGCTCAAATTCATAAAAAACCACAAAACACTTGTTCTGATACAATAAATATATTATAATAGAAAAAAGAACAATATGCTCTTGACTTTGGGTCGGTCGAAATAAGTGTACAGAATGAGCTTAGATAATAATTCTCATTCAGTGTTTTTATTTGATCATGGTTATGAAATATAGCAGAAAGATGCTGGACAATAAGAGGTCAGAGAGAGAGCAAAAGAAATCTTTGAAATATAGTACCTGTTGAAACAATCCATCAGTATATAGAGAGTCAGGGTGAGAAAGATAAATCGGGCAGTAAAAATAAGGATCTATCCAAATAAAGAACAGATAACCCAGATAGAGAAAACAATCGGCTGCAGCCGCTTTCTCTATAACCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAAACATCGTGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 55617-56876 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKI01000003.1 Ruminococcus sp. TF11-2AC TF11-2AC.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 55617 36 100.0 37 .................................... TTGATGGCCGAGAACGGTGAAGTCAAAGGAAGCCTCT 55690 36 100.0 36 .................................... AGGCAAGAAAAAAGTTTTGAAAGTCACTGAAAAACA 55762 36 100.0 36 .................................... TGTGTTCTATGAGCCTGATTGACGAGTTGCAAGTCC 55834 36 100.0 34 .................................... GACTATACCGCCCACCTACGGTATTTTAACGCTT 55904 36 100.0 34 .................................... GTATGGGTTAAATTCAAACGGATCCTGACCTTTT 55974 36 100.0 37 .................................... TTTACTTGAGTAACTCATTCCATCAAACAGTTTCTGT 56047 36 100.0 41 .................................... TCGGGCAGATCCGGTACAATATTACGTCACTTATACACATC 56124 36 100.0 35 .................................... TGTGTCATACGTCTAGGATGCGTAATCCACTGATG 56195 36 100.0 36 .................................... TTCTGTACGTTTATCGTATCCTCTAAGTCGCACATC 56267 36 100.0 37 .................................... GCTGATTGTCTTTTTAGTCCAGTATGCGTTGCGAACT 56340 36 100.0 34 .................................... CTATAATGCAGTATTGCCGAGTGGTGAGTTGATG 56410 36 100.0 36 .................................... AGAATGTAATCACCTCTGGATTGAAGCTCTCTGAGC 56482 36 100.0 37 .................................... ACGAAAACAAAACCACTTACACCCGTATTTTCCCATC 56555 36 100.0 33 .................................... GGTCAGAGATATACTGACAGAACTGTTCTGGTG 56624 36 100.0 38 .................................... ATGTCATTTTCCCAAATTTTCTTCCCGTTCTTGTCGCA 56698 36 97.2 35 ..........T......................... GCTCGGTTTTAATCGTCTTAAATAGTCTTATTATT 56769 36 100.0 36 .................................... ACTCCACCGAATGTCTTGTCGAATTCATCAAACATT 56841 36 83.3 0 ....T....C....................AA..TT | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 98.9 36 ATTGAGAAATGTAGCTCCCCGATAGGGGACGGAAAC # Left flank : AAAAAGGAAGATATTTTGGAAGCAGTACAGTTATTCTATGAACAGTATTATCAGAATTTCCAGAAGAAATTTCCGCGAAGTGACAGGAGAAAACCGAATACAGTATTTCTGGGCGGTGGAAGCGGTTTTGTTTCCAAGACAGTGATTTACCCGTTATTCGGAGAAAAAGAGGGCATTGAAACTGTAAAAAATATTTTTGACAGAACAAATGTGCCTAAAACCCATCAACATTATAAAGATACCCGTATGGGAGTATCCCCTCATATTTTAAAATGTACAAGATATCAGGGAAAAGAATATATGATGGGGGAATGTGAATTAAATATTATTTGAGCATTTTGTTCTTAAATGCGTGAAATTTCGTATTTTGCCGCGCATGGCTTAAATGCTGGATTTGTGAGAACTTTTTACTTTCCAAAACAGCTGTATTTCAATGAAATTACTTTTCCCCCGCAATCCCCCTATTCGTCCCAGACAGGACATGGGGTTGCGGGGATGGT # Right flank : TTGTATCCAAATTTAGAAACAGTTACATTTGGCAATAAAGTGAATTATTACTAGAGAAACAGAGGTGATATCATGAGTCTTTTATATGTAAATGACAGTGGTGCAACAATAGGAATAGAAGGTAACTGCTGTACCGTAAAACAAAAAGATGGTTCGAAACGAATGCTTCCCATAGAATCTCTGGATGGAATTACAATTATGGGGCAATCCCATATGACGACACAGTGTGCAGAAGAATGTATGCAGAGAGGAATTCCTGTAAGTTACTTTTCAAAAGGTGGTAAATATTTTGGCAGATTAATCTCAACAGGTCACGTCAATGTAGAACGTCAGAGAAAACAATGTGCACTCTATGATACAGGTTTTGCTGTGGAACTTGCTATGAAAATTTTAAGTGCAAAAATCAAAAATCAAAGCGTAGTGCTGCGCAGGTATGAGAAAAGTAAAGGTTTAAATCTGGAAGAAGAACAAAAAATGTTAGCTATCTGCAGAAACAAAGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGAAATGTAGCTCCCCGATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //