Array 1 9857-7508 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSC01000069.1 Acidithiobacillus thiooxidans strain GD1-3 contig069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 9856 28 100.0 33 ............................ TAAAAGCACCTTTATAAAGATGAAAAGTGCCCT 9795 28 100.0 33 ............................ ACAAAATCTTGGCTATCTGCAATGAGTGCGTTT 9734 28 100.0 33 ............................ TATTCCTACCCTTATAAATCCAATTGGACAAAA 9673 28 100.0 33 ............................ CCCGCCCCGTCTTGAAGTTCGGGGCCTCTCCTG 9612 28 100.0 33 ............................ TGTTTTTAATCAGGGAAGGATCAACACCTAATA 9551 28 100.0 33 ............................ TTTGCTCCGCCTGCTTTTGTGCTGCCTGCCTTT 9490 28 100.0 33 ............................ CTCCCTGCAAAGTATGGCGCACTTCATCCAGAC 9429 28 100.0 33 ............................ TGAGTCAGCGTGAGATTGCTCATAAGCATAAGG 9368 28 100.0 33 ............................ TCGGCCATTAGCAAGATCAAGCGCAAGATCAGA 9307 28 100.0 33 ............................ TCACTCTGTGCGCCCATTTACCGACCCGCTGCA 9246 28 100.0 33 ............................ CAAGTGGTAGATTATCCAGTTGGCCATGAGGCC 9185 28 100.0 33 ............................ CCAACGGTTACTGCATACTCAACCTCAAATCCC 9124 28 100.0 33 ............................ CTACAAAGACCGTAGTAATGCCGCTGATTGCCT 9063 28 100.0 33 ............................ CCGCAAGTATCGCCGCTTCTTTACGGGTAGCTC 9002 28 96.4 33 ...................A........ CAAGTCATAAATCCTCCTTATACGCTAGCGGCG 8941 28 100.0 33 ............................ CGGCAGCACGTCCGGCTGGAGTTTGCAGATACT 8880 28 100.0 33 ............................ CACTCCAACCCCTGAGAAGCCCCGAGGTGCGGG 8819 28 100.0 33 ............................ CGGCAGCACGTCCGGCTGGAGTTTGCAGATACT 8758 28 100.0 33 ............................ CCCGGATAAAACCGGATTCTTGGCCGGGTTCTG 8697 28 100.0 34 ............................ TTTCAGCATTGGGACTTGCTGCGGTGGCTAGTTA 8635 28 100.0 33 ............................ TAGGGCATATAAATCAGCCTGCCCCTTCCCAAG 8574 28 100.0 33 ............................ TATGATTTATGGCGCGTTTTGCACACTGTTCCG 8513 28 100.0 33 ............................ CGAGGACGAGATCAAAGCCGGCGCACAGGTCAA 8452 28 100.0 33 ............................ TTAGACGCTGGCAAGCGATACTATGCCTATGAA 8391 28 100.0 35 ............................ TACACCGGGTAAAGGGTAAGGGAAGGGGCCAGCAA 8328 28 100.0 33 ............................ TTCGTAAATAACCCGCTGTGGTCTTCCAGTATG 8267 28 100.0 33 ............................ TACCGCTGGCAGCGCATGGACCGCCGAGATTTA 8206 28 100.0 33 ............................ CCCGGCAGATAGTGGCGGCCCGACGAACTACGG 8145 28 100.0 33 ............................ CACCACCACGACTATCAATTTAGGTTCCGGCGC 8084 28 100.0 33 ............................ CACCATCATCGAACCGAGCAACGGACAGGGATA 8023 28 96.4 33 ............G............... TGATCTTGCCCAAGTCTGCCGCAATCCCGATCA 7962 28 100.0 33 ............................ TCCCCCGAGCTAACCACTGCTGCCGTTTAAGCT 7901 28 100.0 33 ............................ TAAAAACGCCCCAACATCAGTCAGGGCGTAACT 7840 28 96.4 33 ..T......................... TACGGGCGTGCCCACGATTATTCGTGACATGAC 7779 28 100.0 33 ............................ CTCTGCGCCGGGCATCTTCGGGCATTGCACAGA 7718 28 100.0 33 ............................ CCCGGATAAGACCGGCTTTCTTGCCGGGTTCTG 7657 28 100.0 33 ............................ TATGGAAGATTCCGTATTCAACACACCAAGTTT 7596 28 100.0 33 ............................ CCATTGATTTCTCCTATCATCCGTTTTGGTCTT 7535 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 39 28 99.7 33 GTCTTCCCCACGCATGTGGGGGTGTTTC # Left flank : CGCAAGAAATGGCCGGGCAATATAATCGCCAGAAGGTTTCTACAGCCTTTCGGGAGCGTGTCATTCAAGACGACATTCTAGGCAGAATTGGGGCTGACATAGACAAAATTTTAGAGACAAAGAAATGCTCGTTGTGATTGCCAATCATATCCCGCCTGCGGTACGAGGGCGCATGAAACTTTGGTTTGTTGAACCACGTCCCAATGTTTTTGTATCGGGAGTGAATGATGCCGTGGCCAAGAAGATAATCAGCTACTTATACGAGCATTGTCCCTGTTCCAGTGGCCTTATAATTTTCAACAAAACACGGGAAGCTCCTGGTTACAGAATATCTGGATTTGGAGACCCTAAACGCCCACTCATGGAGATTTCTGGTCTTCAACTCATAGCTGAGAAACAGGGAGAAGCTTCTGACCATGAAGAAGGATCTTCCGATGGAAAGTGATTTTGTAAAACGCTACATTTTGTGTTTCAATATTGATCTTTAACAAAATACTGGT # Right flank : GCTCCGCTCAATCACTCCAATAAATGCAGATACCGGCTACTGGTAGCAATGTTGGCGTGTCCCATGTTTTCCTGCACCTGGCGCAGATCCATGCCCTTGGCCAGCCACGCGCTTGCTGCCGTATGCCGGAGTAAGTGCGGGCCGCATTGGGGCTTTTCGATTCCTGACCGGATGAGCAATCGGGATACCATCGTATGCAAGGCCTTGGCGGGAATGGCTTTGCCCTGGTCGGTTACGAACAGTGCATCGGTTTCCGGATGGGAACGATGACGGATCTGCAGCCAGTTCCGCATCGCCTCGACGCCTTCCGGCTGGAATCGCACCAGTCGTTCCTTGTTGCCTTTCCCGACCAGGCGGATCCGCCCTTCAAAATACTCGCCAGCATCCTTGATGGTCATGGCTACCACTTCAGACGCTCTAAGCCCGGTATCGAGAATAAAGCGGATCAGTGCCTTGTCGCGCATGGCGGCATAGGAAGTACCCAGATCTATGTGCGTAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCATGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //