Array 1 1737343-1739020 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIS01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01474 2015LSAL01474-E4_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1737343 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1737404 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1737465 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1737526 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1737587 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1737648 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1737709 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1737770 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1737831 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1737892 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1737953 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1738014 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1738075 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1738137 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1738198 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1738259 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1738320 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1738381 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1738443 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1738504 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1738565 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1738627 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1738688 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1738749 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1738810 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1738871 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1738932 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1738993 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1755279-1757199 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIS01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01474 2015LSAL01474-E4_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1755279 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1755340 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1755401 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1755462 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1755523 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1755584 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1755645 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1755706 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1755767 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1755828 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1755889 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1755950 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1756011 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1756072 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1756133 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1756194 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1756255 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1756316 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1756377 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1756438 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1756499 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1756560 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1756621 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1756682 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1756743 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1756804 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1756865 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1756926 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1756987 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1757048 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1757109 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1757170 29 96.6 0 A............................ | A [1757196] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //