Array 1 2378872-2376402 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044203.1 Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2378871 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 2378810 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 2378749 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 2378688 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 2378627 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 2378566 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 2378505 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 2378444 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 2378383 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 2378322 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 2378261 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 2378200 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 2378139 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 2378078 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 2378017 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 2377956 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 2377895 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 2377834 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 2377773 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 2377712 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 2377651 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 2377590 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 2377529 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 2377468 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 2377407 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 2377346 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 2377285 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 2377223 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 2377162 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 2377101 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 2377040 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 2376979 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 2376918 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 2376857 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 2376796 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 2376735 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 2376674 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 2376613 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 2376552 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2376491 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 2376430 28 96.6 0 ........-.................... | A [2376404] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2398049-2395417 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044203.1 Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2398048 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 2397987 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 2397926 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 2397865 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 2397804 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 2397743 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 2397682 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 2397621 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 2397560 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 2397499 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 2397438 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 2397377 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 2397316 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 2397255 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 2397194 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 2397133 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 2397072 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 2397011 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 2396950 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 2396889 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 2396828 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 2396767 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 2396706 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [2396685] Deletion [2396667] 2396664 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 2396603 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 2396542 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 2396481 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 2396420 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 2396359 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 2396298 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 2396237 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 2396176 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 2396115 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 2396054 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 2395993 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 2395932 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 2395871 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 2395810 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 2395749 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 2395688 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 2395627 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 2395566 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 2395505 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 2395444 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 44 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //