Array 1 4694-3157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUYC01000230.1 Citrobacter koseri strain 661_CKOS 648_48699_403700, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4693 28 100.0 33 ............................ GCGCTCACGGCACTGATTGTCCGGGTCTGTGCT 4632 28 100.0 34 ............................ TTGCTGGATCTGTTTAATGAGCGCGGAGTTGTCC 4570 28 100.0 32 ............................ GCGATATCGGTGTCGGCTATCCGCTTGAGTTC 4510 28 100.0 32 ............................ ATCCAGGAACCGTACACCCGATAAACCATTTG 4450 28 100.0 32 ............................ ATTAACTACCACCAGTACGATTAATTTTGGTG 4390 28 100.0 33 ............................ AATACCAAGTGGCGGCGTAAATCGCCGCACGAA 4329 28 100.0 32 ............................ TGTTGATATAGCGATTGAATATGTCTCACCAC 4269 28 100.0 32 ............................ ATAATCACGCTCCAACCGCCGAGCAGCTTTCT 4209 28 100.0 32 ............................ TTTGCCAGGAAATGCTCCACGACTGCGACAAA 4149 28 100.0 32 ............................ GCAGCGCTATCGAGCATGTCGGTGGCTTCGAC 4089 28 100.0 33 ............................ AGTGAGTCAGATCTGCATCTGTTGAATGGTCTT 4028 28 100.0 32 ............................ ACAACCAAATCACGCTTAGGACCGTGATAACC 3968 28 100.0 32 ............................ CATGAGACATCCAGGCTTGCAACAGACAGCCC 3908 28 100.0 32 ............................ TTGCAGTAAACGCATACCGTCCTTTTCCTGCT 3848 28 100.0 32 ............................ AGACTGGAACCATCAATACCTGTTAACTCTGT 3788 28 100.0 32 ............................ ATCGTCGAACTGATGCCGTTGGCGGCGTGATA 3728 28 100.0 32 ............................ AGAACGGAATAAAGTTTGAGACGGGAATTACT 3668 28 100.0 32 ............................ GGGATCATCAGGGCGCCACGTCGAATGCCTGT 3608 28 100.0 32 ............................ TGAAGTATTTGCCAACATCCCCGTTCTCGACG 3548 28 100.0 32 ............................ TACGACAAAGTGACACAGCATTAGCATTACAG 3488 28 100.0 33 ............................ GGAAAATTCCTTATCGAGGGTGTAGAACGGAAT 3427 28 100.0 34 ............................ ACGATGAAATTCTGTAGCACCGGGCTGACGCGAA 3365 28 100.0 32 ............................ TGACGCGCCAGAATGCGACAGCCCAGGCAGAG 3305 28 100.0 33 ............................ CGCCGCGATGGTCTGTTCGCCTATAACCTGGCG 3244 28 100.0 32 ............................ AGAACAACGACTACCTCGCCAAAGTTGCATTC 3184 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================== ================== 26 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCAGAAAGGCGTCTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCTGAGAAAGGCTATGACCGCGCGATGGGTGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGCTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTTGCCGCCATACCCCGGATACCTGAAACCCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACAGCTTCA # Right flank : CCACAAATGTAATTATTTATTTTGAACGCTCTTTTGTTGATTTTTATCATTTCATCTGCCAGACCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAATGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCGGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTCGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGGCCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3062-3629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUYC01000401.1 Citrobacter koseri strain 661_CKOS 1132_11889_108957_342_,776+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3062 28 100.0 32 ............................ AACAGGACCGCCAAGCAGGCTCATCGCAGAAC 3122 28 100.0 32 ............................ TGAGGACTGGGACCTTTTGTTGACTGATGTTT 3182 28 100.0 32 ............................ ATATCGCCATCCTCCAGCACCTTATAGTCAAT 3242 28 100.0 32 ............................ GCGCAAAGGCTGACGCAGAGGAAAAAGCGAAA 3302 28 100.0 32 ............................ CCCCCAGATTACAGGCAAGCGCGAGTCATCAA 3362 28 100.0 32 ............................ GTACAGCGCGCTATTGGAGTTTCTCTCACCGG 3422 28 100.0 32 ............................ AGGAAGAAAAGCGTATGGAGCGCTACACCATT 3482 28 100.0 32 ............................ AAAGGGTGTTCCATTCATTGCACCATGAATTA 3542 28 100.0 32 ............................ AACGCCGGAGCGGTAACAAGGGAGAAAAATGC 3602 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCGCAGGGCGCGCGCGCTGAAGTTCACTTTACACCGCGTTTGATCACCACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGAGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGTTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTGTTTCCGTCCCGCCGTGGATTGTTGCCGTCCGTACGCGCGCTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAGGATTAAAACAGAGCGCAATATACCCTTTTTTATTTTATGTTACTAACCTATTGATTTTATTGTATATATAACTTTGGTGAAAAAGGGTCTGACAGGAAGAAGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTTAATGTAGAAGGAAGGGACGCAGCGGGGAATAAAAATAACGTTAATTCGCATCAACGATATTCATGCAGGAAAGGGGCAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //