Array 1 558292-557128 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003408.1 Thermotoga sp. 2812B chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 558291 30 93.3 36 ............T.......G......... GGGCGATGTAATTCCCTCGATGCTTCGAAAGTACGA 558225 30 100.0 37 .............................. TTGGTTGTATTCACAGATTTTGGTAGGATATATGCTA 558158 30 100.0 37 .............................. CATGCGACCCATCCAGCGATGGCCGGCGATTGGCTGG 558091 30 100.0 36 .............................. TAGAGATGATGTGGTACAGAAGGCAAGTCAGGGTGT 558025 30 100.0 37 .............................. GAGAATTTCTTGAAGATGTAGATATCGTTGAGGGGTA 557958 30 100.0 37 .............................. CTTCCAAATCTCCAAACTGTATCGAAATTCCACGGAT 557891 30 100.0 36 .............................. AGTTAGAGACCAAGAAGTGGTAAAAGCTTCTAACGG 557825 30 100.0 38 .............................. GACAATGTGGCACGAAACTCGGTTGCCTCGTGTACAAA 557757 30 100.0 36 .............................. TTTACCCATCCTTCAGGTAATTTTTCTGCTATATCC 557691 30 100.0 35 .............................. CCCGTCTTCGATCCACACATCATGCCACAGCCCCT 557626 30 100.0 34 .............................. TAAGCCTGGAAGCTTGCTCCTTGGAAAGATCTGT 557562 30 100.0 42 .............................. TGGAAACAAGAGCCGCGTCAACTTCTCGGCTCCTGATTTGTA 557490 30 100.0 38 .............................. CCGATACTGGGACGAGAATTTAGCACAGGTCAACCACG 557422 30 100.0 35 .............................. GTAGAATTGTCCGAGCTTTGTAGTGCCCTGTAAGA 557357 30 100.0 37 .............................. TTCCAGCCGGTTCAAACGATGTGCAATTCAACTACGC 557290 30 100.0 37 .............................. GCGACGGAGGTGGAAAAATGAACTTCAAGAAGGTTGC 557223 30 100.0 36 .............................. GAGAAGTTCCTTACATCCACGCAGGGATCAACCTCA 557157 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 18 30 99.6 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCGGCATGTGAAGGCCCGGAGAGAACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACCCTTTTACCTGTCTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGCAGTCTCAGAAGGTGCTTCCTTATGTATTGAACGGGAATCGCTATAACGAGAACGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACGTTTATGAGATCGACGATCTCTTTCCTCCTTGCCCAGAGAACAACTTCTTCTCCGTTTTCATACAGCATCTGTGCAAAAACCGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCAAAAACAGAGTTCCTCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCATAAAATGGTTCTCTCATATCTCACGGAATCGGGT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTCTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTCTCCCTCAATGTGTTAGAAGTTAACTATTGACTCCTTGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCTACTTTGTGAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 570459-571677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003408.1 Thermotoga sp. 2812B chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 570459 30 80.0 32 A.....GC......G.....G..G...... CTTTTTGGAGAGCTCATCAACCGTCTGTGCGT 570521 30 96.7 35 ....................G......... TTCAAGGTTGATTTCATGGAAGGAAAGGTTTTTAT 570586 30 100.0 37 .............................. TTATAGGACTTTCGGGTGTTGGTTGTGTGCTTGCCTC 570653 30 100.0 37 .............................. TTGGAGGTGATACGATGCGTGGGATTTATGTACTTGT 570720 30 100.0 36 .............................. GGTTCCGTGGAAAGATCTTGTCGTCGGCATCTCGAA 570786 30 100.0 37 .............................. TTGAGCTTCTCGACTGTTTCTTTGACTCCTTCGATCT 570853 30 100.0 37 .............................. AAAAGTTCTGGAAGGGGCAGTTCTTTCAGAATATTTC 570920 30 100.0 36 .............................. CCTCTTCCATCCAGATGTAATTGAATTCCGCCGACT 570986 30 100.0 38 .............................. AAGGAATGATTGAAACAGTGAAAGGGCGGAGCACTCAC 571054 30 100.0 36 .............................. AGGTTTATAACGGCTGTGTGGTAAGAGGAATAAGCG 571120 30 100.0 37 .............................. CTCAGGGAGGAGGGATTAGCATGAGGAAGTTTTATGT 571187 30 96.7 36 ....................T......... TGACTTCTCTGGGATAGGAAAACGCCGGCCAAATGG 571253 30 96.7 36 ....................T......... CGGTGTAGATGACGTCAGCGATCTCAAGGTGGCTCT 571319 30 96.7 35 ....................T......... CTACAACTACGGCGTCACGGCTTATCTCATCGCCG 571384 30 96.7 37 ....................T......... TTTTTTGTTGGAAACCTACCATGTGAAAGTTATCACG 571451 30 96.7 36 ....................T......... CACTCGAGGACGGCGATGAGGTTCTCGTTTGCAGAC 571517 30 96.7 36 ....................T......... CGATTTCGACCATACGCTTGAAATCTTCCCTCAGCT 571583 30 96.7 35 ....................T......... AAAAGCGGGGAGTAATAGACCCGCGCAAAGTCCGA 571648 30 96.7 0 ....................T......... | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 97.4 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TATGTTTTCAAGAGAAAACAATCCCATCACTTTTTTGAGATCCAATCCCGTTCCGTACAGTCCGCGGAACAATTTGAGAGTTTCCCAAACAGTGAGGTTTTCAAAAAACGCGCTTTTCTGAAGACACACACCAATTTTTCTCTTCGTTTCTCTATCCAAGATTTCCTTTCTCTCACCAAAATAATAGATCTCCCCGGAGTCTTTCTTTCTGAGGCCTTCGAGTATCTCAACGGTCGTAGTTTTTCCCGCACCGTTGGGCCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCAACGGCCTTCACATCACCGTAGTGTTTTTTCAAATCAACGACTTTCAAAACCTCCAGAAAAATCCCTCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCACCCCGTGAAGGGGCACTTTTGTTTGTACGCTAAGGATGCATTGAAATTTGTTGAGCTCAGCGGAGATTATCGATACAAAACGA # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTCTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTCTCCCTCAATGTGTTAGAAGTTAACTATTGACTCCTTGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 3 599826-601733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003408.1 Thermotoga sp. 2812B chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 599826 30 93.3 35 A.......G..................... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 599891 30 96.7 36 ....................T......... GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT 599957 30 96.7 37 ....................C......... GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA 600024 30 96.7 38 ....................C......... GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA 600092 30 96.7 36 ....................C......... ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA 600158 30 96.7 36 ....................C......... TAAAGGATATGAGATACTCACTACTGAGAAATCATT 600224 30 96.7 38 ....................C......... GTGTATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT 600292 30 96.7 35 ....................C......... AAGAACCCCGCAGACAAAGGAAACGTCACTCCCGA 600357 30 96.7 42 ....................C......... CTGGCGACATCCTACACGCTACAAGAAGATTCTCTTCTACGC 600429 30 96.7 43 ....................C......... CAGGCACGGTCGCGTACTGGACGAACTCGTTAGTGGACGAGAT 600502 30 96.7 38 ....................C......... GAATAATCTCTTGAATTTTCCATAATCGTCCCTCCCCT 600570 30 96.7 40 ....................C......... TGGAGGAGGGGACGACAAATTTCTACCAAAATCCACTATT 600640 30 96.7 36 ....................C......... CAGCAAGAAACCTCGGTGTCTCGCTGAGAGAAGCAA 600706 30 100.0 37 .............................. CTTCACCGCATCAATTATTTCGTCTGTTTTATCTTTT 600773 30 100.0 36 .............................. GATATACGTAGGTAACGTTGCATCAAACGACCTCAT 600839 30 100.0 37 .............................. CAAGGTGAAAAACCGAAGCCAAACCTCCCTTTCGAAA 600906 30 100.0 36 .............................. CAACTGAAGCATCAAAAATTATGTCCAATGCTCCGG 600972 30 100.0 36 .............................. CGATATCCGCCTCCTGAAGCCATTTGTAGAGTTCCC 601038 30 100.0 39 .............................. TGTAAAAGATATTGGAAAAATGTACCAAGTGTACTCAAC 601107 30 100.0 36 .............................. TTCGCTCTCCCGCTTTGACTACCATTCGCAGAGGGT 601173 30 100.0 36 .............................. CACTAACCACCGCAGGTATTCGCTCTGCGGAAGCGG 601239 30 100.0 37 .............................. GGCGATGAGATCCTCGTCTGCAAGTTGAAGTACCGCT 601306 30 100.0 35 .............................. GAAACTTGCCGAGAAAATGGCTGAATCTAAGAATG 601371 30 100.0 37 .............................. GGAGGTGGAATTATGTTCAGAGTGTATGGCAAAAACG 601438 30 100.0 37 .............................. GGGGCGAATGGCACCGCATAAAAGAAGTGTATATGTA 601505 30 100.0 38 .............................. ATTCCAAGTAGAAGTGGATGATCCTGAAATTCTGCAGT 601573 30 100.0 36 .............................. GCGGAGCCGTGATAAAAGCAGCTGTTGATCCTTGCG 601639 30 100.0 35 .............................. ACACACAAGACTTGACACGACGTGGTAGGATAGGG 601704 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 29 30 98.4 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCGCCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGGTAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGAGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGTGTTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTAATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 4 1065953-1065059 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003408.1 Thermotoga sp. 2812B chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1065952 30 83.3 35 C...T...............GG......T. TCTTCTTGATAGCCTTGTAGTTGTCTGTGGTCATG 1065887 30 96.7 37 ....................G......... TTGTTTTTGGCATGCTGGCGCTGGCGCTGGCGGGCGC 1065820 30 96.7 37 ....................G......... CAAGCCGAATTGGAAATGGAACGATGAAACAGAAGCT 1065753 30 100.0 36 .............................. GTTCTCTCAATGTCACGTCTCATCACCTCTTCTTCG 1065687 30 100.0 37 .............................. GCTGCTCCCAGTGAAAAGCTGCATGTCAATGGTAAAA 1065620 30 100.0 36 .............................. TCTTTGCCGAGAAGTGGCGGTTTCTTCTCGAGTGCT 1065554 30 100.0 36 .............................. GTTGAAGTACCGCTTGAAGAACCCCGCAGAAAAAGG 1065488 30 100.0 37 .............................. TGGATTCCCGTTAGGCGCACAGATCATCAAAACAGAA 1065421 30 100.0 37 .............................. AAATCGAAGAGCGGGAAGACTATGTTTACTATCTCTT 1065354 30 100.0 36 .............................. GTTTTGAATCTTGCGCTTAACAAGATTACTGGAGAT 1065288 30 100.0 37 .............................. ACCTTTTGTGATCTTCTGAAGCCGTGACATATACATA 1065221 30 100.0 37 .............................. GAGTACGAGTTGTTGGGGATCTCGACGTCGTCGGCTA 1065154 30 100.0 36 .............................. GTCATCATCGATTTCAACGATGCAATCGAAAACGGG 1065088 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 98.3 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : GTCAATAATCTCTTCTTTATTTCTCTCGAGGACATCTTTGATGTGAGATATCTTCGGATGGTCGAAAAAGCCTAAGAAGACATCAAAGGTCCTTTCCAGAGGGTCTCTTGAACCACTAGATTTGTCGAGAAATTTCATGGTGGGGGAAACAGAAGAGGAGAAATTCCCGCGCTGTTTTCTGTAGAGGAAGATTTTCGAGTTCTTACCCCCTGGTTTTTTCTCGATAGAAACAACATCCTTGAAAACCAAACCCTCTGAATTACTCTCAAGAAAGATAGCTATTCCTTCATCAGAAGGAACTTCTTCAGCGAAGTTTGAAAAAGAATCACCACCAATTTTCCCAAGATTGTATATCTTTTCAAGCACCCCTATCCCCCCTGCGGTGTTATCATTCACATTTTAACGTACACTTTCTGACAACAATCTAAATCCATAGTCATTGCACCTGAAAGGAAGTATTGAAACAGTATCGAAGATGAAGAAATCATACGGTTTGTGGG # Right flank : CCGTTGAGTTCAAGAGAAATTATATCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTCTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCCACTTTGTGAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 5 1207573-1205998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003408.1 Thermotoga sp. 2812B chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1207572 30 93.3 38 .......A............T......... TTGAAACTCAATACTCATACGCATCCACCATATTCCCC 1207504 30 96.7 37 ....................C......... ATCGTTGAATAGCTCGAACTGCCTGGCGTGGAAGAAA 1207437 30 100.0 38 .............................. ATCTGGCAAATGATCGAAGACCTTGACGATGCTTCTCT 1207369 30 100.0 38 .............................. ACTGGAAGCCTCTTTCGATGTCGCCTCAGGAATTCGAC 1207301 30 100.0 38 .............................. AAATACAGCAACGCTTTTGAAAGTTACATCGGATATCC 1207233 30 100.0 37 .............................. GTTTTGTAGTACCGGGCGACGTTGTCAAAGAGTTGGT 1207166 30 100.0 35 .............................. TCTTTTTTGTCTCGTTGTAGAGCGCGTCCGCAACG 1207101 30 100.0 36 .............................. CGTCAAGCCTGTAGTCGTCGGTGTCGAGGTTGTTGT 1207035 30 100.0 37 .............................. TCTACGTCGAGAGAAAGCTTTTTGATTTTCCCGCGTA 1206968 30 100.0 36 .............................. ACGCTATTACGTCACCAGGCCTCAACTGTTCTTCAG 1206902 30 100.0 36 .............................. CCCTCCTACCAGCCTTCTCCAGATGTCGGGATACTT 1206836 30 100.0 37 .............................. AGGCGGGAATCCTCACACCGAACGAAGCAAGAGAAAT 1206769 30 100.0 36 .............................. ACGATGATCCGGTAATGGGCAAAGTATATGTAGGAG 1206703 30 100.0 38 .............................. GTGCCGTTCGATTGTTCCGTCGTATGTTCTATAAAAGC 1206635 30 100.0 36 .............................. CGGTAGCCCTGCAAAGGGCATAACCAAGTACTACCC 1206569 30 100.0 36 .............................. AAGATGATCGAGCACCTGCAGTTCGGATGCAGCGGA 1206503 30 100.0 35 .............................. CAAGTCTATCAGAGGTGAGAGAATGTCACAAACAC 1206438 30 100.0 43 .............................. ACAAAACACCAGAGGAAGCAAAGGAAGAACTCAGAGAGCTAAT 1206365 30 100.0 36 .............................. GTCCACCTTCCAGAATGAGCGGTCGTCCTGCGTTGT 1206299 30 100.0 37 .............................. AACCAGAGGAGGTGTTTCTTATGTGGAAAATTAGGAC 1206232 30 100.0 38 .............................. GCGGGACAGAGCGACGGAAACATACGCGTTGACGAAAT 1206164 30 100.0 37 .............................. TTGTTGAGAACATCAAAAGATGGGTCAAAACATATCG 1206097 30 100.0 40 .............................. GTAGGCGGGATAGGATCAGGAAAGACGTTCGCGGGGGCTG 1206027 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 24 30 99.6 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : ACTTCAACGGAAAGTGATTTCATAGAGGAAACTGGTACCGGAAGTTTCGAGCCTTCTGCCGTGTGATTTTCCCAGGGTTTATAACCGTAATAGAACTCGGGATAGCCGAGAATGTACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCGTCGAAAGTTACCTTTTCACCGTCGAATTTCATAGTTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAACGCCATTCCACACAAAATCCGATGTTCCCGGTTTTGTCATCAGTATCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGGATTTTTGTTCTTGTACCTCTGAAAATGCATTGAAACTGATTCAATATCGTGGGCCACGACTACAGGGGGAGC # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTCTCCCTCAATGTGTTAGAAGTTAACTATTGACTCCTTGAATTCAAATCACTTACATGTCATCGATTATCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGACCTTCCAGTGCCAGATACACGTATCACCCACTTTGTGAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 6 1320374-1321606 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003408.1 Thermotoga sp. 2812B chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1320374 30 96.7 37 ...............G.............. TCGGTGATATCCTTAAAGGTCGTGCCGTAAAGCGAGT 1320441 30 100.0 36 .............................. TACAGGGCTGGCAGTACGAAGAGGTTATAGACGAAA 1320507 30 96.7 37 ....................T......... ACGAGTGCAGACCAGATGGGAAAATAGTTGTTACCTT 1320574 30 93.3 37 ....................T......G.. TGATAGAATGGCTTGGAATCTGGATTGATAAAATCCT 1320641 30 100.0 38 .............................. GGACGGTCAGTTTTTGAAATTACACACAGAAGGAGCTA 1320709 30 100.0 36 .............................. TCGAAAAAAGACGTCTTGTTTTTGAACAAGAGCGAG 1320775 30 100.0 37 .............................. ACAACAACCGGCGACTAAAATTCCTCGCCGTATCAGG 1320842 30 100.0 36 .............................. CAGAGATTGTTTCAGTTGTTGTATCTGTGTAGAACT 1320908 30 100.0 39 .............................. CGCAGAAGCCATCCCTGTATAAGTCAGGAGCAGAAAAGT 1320977 30 100.0 37 .............................. AGGCAAAAGAGATTGTAAAAAGATACGGAGGAAAGTT 1321044 30 100.0 35 .............................. GGGAGCGCCGGGAAGGGGATAACTAAGCTTTATCC 1321109 30 100.0 36 .............................. GATATATGTCACAGATTCTCGGAGTAGACGTTCCCG 1321175 30 100.0 37 .............................. TCTCTGCTCTCATACAAAACAAAACAGATAGGGTTAT 1321242 30 100.0 37 .............................. TGGTTAAGCGGTGTTACTATGGATATTGGTGAAAAGA 1321309 30 100.0 36 .............................. CCGAGCCAATCGAGGAACTTTGTCGCACCTGTTCCT 1321375 30 100.0 37 .............................. AGGGATAGTCCTGTGGGGGTTGCTGGGGCGGAACCGT 1321442 30 100.0 35 .............................. TTTGCTTAATCACGATATCTTTTTTATTAATGCCC 1321507 30 100.0 40 .............................. AGTGGACATAAGACGTGTCGAACTTGTCTACGACAAAAGA 1321577 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 99.3 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CCAAAGGAAAAACACCGGAGGAAATCTACTCAACGATAGTAAAAATAAGGAAAATTCTGAAGCTTTACGATGTAGACAGTGCGGATGGTATTTTCCGGTCGAGCGATGGAAACTTCAAGGGTTACATCAGCCTGCCGGATCGCTATCTCTCCAAAAGAGAAATAAAGAAACTCTCGGCGATTTCTCCAAACACCACAGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAGTACAGAATAAAACTTCCACCAACGATCTATGGATTCGAAGAACTCCGATGTAAAAATGAAAACTGCATCACCAATCCCGCACACGGCGAAAATGCTTCACCTTCCTTTGTGAGAAACGAAAAAGGACAGTTCATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAGATCTGGAGTATTTGAGAAATTTGCGAAAAAAGAAAGCAGGGGAATTTTCCCCTGCTTTTTTCATTTTATAGCCAAGCTTATCTGGACTCGGTTGGT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTCTTTCCATAAACCATTCTAACACACAAGAGAGCACTTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATAAAAAAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCACGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTATTGACTCCTTGAATTCAAAGCACTTACATGTCATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCATTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGAACCGACTTTCCAGTGCCAGATACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 7 1413631-1412394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003408.1 Thermotoga sp. 2812B chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1413630 30 73.3 36 T...TTG.G.T........TG......... GATGTACCACGATTGGTATGTCTCCGGCGTCGGAAT 1413564 30 100.0 36 .............................. CGCTGCGGCTTTCTACCATACACGGCTGCGAAGTAG 1413498 30 100.0 37 .............................. TCTCGGATATCAAAATGCTTGAAATTGTTGTTGATTC 1413431 30 100.0 37 .............................. GAGAGATAAGAAAGAAGTGGTATCAGAACAGCTCGAG 1413364 30 100.0 36 .............................. CTGGACCGGCCCGAACAAAACGGGCACAAAACTCGT 1413298 30 100.0 38 .............................. ATGACATGGGAGCTGAAGTACTGGAAACATCCCGCTTA 1413230 30 100.0 37 .............................. ATAGCTCGATATATGGAGTTAAAGTTACTGGAAACTC 1413163 30 100.0 36 .............................. CTTTTGCTTCAGAAAGACTTTTGTCAAGCAAAGGCG 1413097 30 100.0 37 .............................. GACATATCGGTTGTTGAAAAGGAAGGTGAGAAATATT 1413030 30 100.0 38 .............................. ATAGACGAAAAACGGAACTGGATAAGCGAAACTGAAAG 1412962 30 100.0 36 .............................. ACTCCATGCGATATAACGGAAGGAGGGGATTGAGAA 1412896 30 100.0 39 .............................. TAGCTTTATTTCGGTGATGTATCGTTTTCCGTTCCTGAA 1412827 30 100.0 37 .............................. AAAATAAAGCCCGCTCTCTTGAGCGGGCTGGTTAGAG 1412760 30 100.0 37 .............................. CCTCCATGCTCTTCGACGAACTACGTTCTCGAACACC 1412693 30 100.0 37 .............................. ATGCAAGCAAGAATTGTGAAAACAGAAAAAGGAAACC 1412626 30 100.0 38 .............................. GGCTACAGGGTATACTGGTCATCCGAAAGTCAATACGA 1412558 30 100.0 38 .............................. CAGGTGGATTTCCTCATATCTCACAGGCTCACACTAGT 1412490 30 100.0 37 .............................. AATCCTTTGTTTTTGACTAATATTCCTGAAATTGTTT 1412423 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 98.6 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : ACTTCCTCGCAGAAAGTTTGAAAATATCCGGGCTACTTCCCGCTCTCGCCGTTGGATTTCTCATGTCAGTTACCATTGCAAGCTTTGGTATTGCGCTTGCTTTGAAGATGGAAAGCACTGAGGGATTCCAGATGATCATGATGACTCTGATGATGCCTCTGGTCTTTCTGAGCGGTGCAATGTATCCCATCGATTCCATGCCAAACTGGATGAAGGCTCTTGCCTACATAAATCCCCTCACCTACGCGGTGGACGCCTCGAGAGGGTACTTAGTGGGAGAAAAAGTGATGAAGTTCTCTTTCGGCCTCGACTGGGGAATTCTCTCGATCTTGATGCTGGTGGGGCTCATCCTCGCGATGGAAAGCTTCGAAAGAGCAAGAATAAGTTGAGATATCAACAGTAAAACAAAGGCAGGGGATTTCCCTGCCTTTTTGTTTTTTTATGGAGTTTCATTGAATATGAAATGCTAACAGAAACAACGATTTCGGAAAAGAAGAAGT # Right flank : CCCATTGAGTTCAGGAGAATTTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCGGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAATTAACTGTTAACTTCCTGAATTCAAAGCACTTACATGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTCCTTCCACTGCCAGTCACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //