Array 1 216071-213538 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUU01000087.1 Salmonella enterica subsp. enterica serovar Albany strain sg_wb24 wb24_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216070 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 216009 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 215948 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 215887 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 215826 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 215765 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 215704 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 215643 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 215582 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 215521 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 215460 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 215399 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 215338 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 215277 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 215216 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 215155 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 215094 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 215033 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 214972 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 214911 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 214850 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 214789 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 214728 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 214667 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 214606 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 214545 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 214484 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 214422 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 214361 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 214300 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 214239 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 214178 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 214117 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 214056 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 213995 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 213933 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213872 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 213811 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 213750 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 213689 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 213628 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 213567 29 100.0 0 ............................. | A [213540] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234608-232628 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUU01000087.1 Salmonella enterica subsp. enterica serovar Albany strain sg_wb24 wb24_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 234607 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 234546 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 234485 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 234424 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 234363 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 234302 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 234241 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 234180 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 234119 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 234058 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 233997 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 233936 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 233875 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 233814 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 233753 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 233692 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 233631 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 233570 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 233509 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 233448 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 233387 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 233326 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 233265 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 233204 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 233143 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 233082 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 233021 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 232960 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 232899 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 232838 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 232777 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 232716 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 232655 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //