Array 1 145926-147542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJF01000008.1 Pectobacterium brasiliense strain S2 S2.scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145926 29 100.0 32 ............................. AATGCCACAGCAGTATGGGCAGCGAAGCTGGG 145987 29 100.0 33 ............................. ACAAAAAACCAGCTAGGCGAAACAGGCGCAGCC 146049 29 100.0 32 ............................. CTAGATATCAGGGCTTGAACGCGGCAGAAGCA 146110 29 100.0 32 ............................. TTTGTGCACCTCATCATCGACAGTGATCGCTG 146171 29 100.0 32 ............................. TATGCAGAGTTGGCTAAATCCGGTCTCATCAT 146232 29 96.6 32 ............................A AGCCGCTGAAACCCGCTGGAGTGAAATAAATC 146293 29 100.0 32 ............................. CGTACTTTGTATTCTTCAGGTAGACGAACGGT 146354 29 100.0 32 ............................. GAAAAGTGGGTAAAAGCCTTTACGATATGGTG 146415 29 100.0 32 ............................. CGATTGGTGTGATGCTGCCGAATGATGCCACA 146476 29 100.0 32 ............................. AGTGGATCGACTGGGTACTGAGCTTGTGCGAT 146537 29 100.0 32 ............................. GTCGCTTAGGTGGCCTTTTTTATTGCCTGGAA 146598 29 100.0 32 ............................. TATGGTTCATATTTTGGACGCCTAACGTCGAG 146659 29 100.0 32 ............................. ACGGCACGGTCACGTCAACGTGGCATGAATAC 146720 29 96.6 32 ............T................ AGCGTTCCCGATACGCCACCGAATACGTCATT 146781 29 93.1 32 .A.........A................. CCCGACAGCAGGAGCAACACAAAGAAACCTAT 146842 29 100.0 33 ............................. GACTGCCAGTCTGACGATCCTCCGAGCCCAGCA 146904 29 100.0 32 ............................. ATTCGATAGCCTGTCTGCTGCATCTGATTGAC 146965 29 100.0 32 ............................. TCGGCAACGATGTGCGCGATGTTATCGCAGGT 147026 29 96.6 32 ............T................ TGCGGCGTGATCTGGGGTTGTCTCCGTGGCCT 147087 29 96.6 33 ............................A GACAATTGCTTTGTAGGTTGCCCGACTGGCGGT 147149 29 86.2 33 ........T....A..T........G... ATTGATGATGAAGAGCAGCAAAAGGCGCTCAAT 147211 28 93.1 30 .A...-....................... GACAAACAAGTCGCACTCTGCGGCAATGCC 147269 29 93.1 32 ............T...T............ GTAAAACGTCAGAAAAAAGTGTTATTGCATCA G [147271] 147331 29 96.6 32 .........................G... AATCGAACGGTGCCGATCTCACAGTGGCTGCA 147392 29 96.6 32 ........T.................... CCTCCTACGGTGCCGCCCGTACCTCTATGCGT 147453 29 96.6 32 ............T................ CAAAGTTCATTCACTGATGGTTCATCTCCACC 147514 29 93.1 0 .........A.................T. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGATGATGCACAGCCGCCTGCAATTCCAGAGCCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAACGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAATCGACGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCTGCACGGTTCAAACCTCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTCACGGTGAGGCGCGATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACGGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCTGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCCGCCGAGCTGTATGAAACGGTAGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTACTGGGTTTTATCTCGTCGCCGCGCGAAAATGTCGGCAGTGTGCCGCCTTCCAATGTCTTTCAGCCGATT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 128843-129891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJF01000011.1 Pectobacterium brasiliense strain S2 S2.scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 128843 28 100.0 32 ............................ GCAGGAAAATAAAGGCTGGCTGGAATTACCAA 128903 28 100.0 32 ............................ TGCCCATGTCCGATAATGTGATGCGGGTCGTC 128963 28 100.0 32 ............................ CGGACGCCCCGTATGAAATACCAGTGGTAATT 129023 28 100.0 32 ............................ TACGCGGATGCATACCGCGAAGCTCACGACGC 129083 28 100.0 32 ............................ CCCATCGCCCACTAGGATTACCTGTGTTAGTT 129143 28 100.0 32 ............................ TCTGGCTGGAGCGGCATAAATGAAATCGTATC 129203 28 100.0 32 ............................ AGCCAGTTTGGCCCAGATATCGAGTGAGGATT 129263 28 100.0 32 ............................ GATGATGATTGCCCAATCGCTCAACGTAAGCC 129323 28 100.0 32 ............................ CTGACGAAAAGTTGAGCCTGACCAGCCCGACA 129383 28 100.0 32 ............................ TGTATTGCCGCGAGGATGCCGTGTGGGTTCAG 129443 28 100.0 32 ............................ AAGCGCTCCCACCGCCGCAGCCTGCAACACAG 129503 28 100.0 32 ............................ CTAAAAACCGCACTGAGGAAATTGCTCAGGCC 129563 28 100.0 32 ............................ GATCAGGATTGATGATTGCCAACTGCTCCAGT 129623 28 100.0 32 ............................ ACGCTATGACGTGAGAGCTGCGGCGGGTCATG 129683 28 100.0 32 ............................ ACGCATCCCCATATCACTATCGGGAATAGGGC 129743 28 100.0 32 ............................ GTGATTCCGCTGCGAAAATTGCGGGCGAGAAA 129803 28 100.0 33 ............................ CAACGTGCGCAACCGCAACAAGGGCGAACGCAA 129864 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCACAGCATATGCAGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCTTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCTACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 138653-136702 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJF01000011.1 Pectobacterium brasiliense strain S2 S2.scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 138652 28 100.0 32 ............................ GATCTCTTCCGCTGGCAGGCCGTATTCAACGA 138592 28 100.0 32 ............................ ATTCCCCCCATAAGGCGCGAATCTGTGAGGCA 138532 28 100.0 32 ............................ CCTGAACCCGGCCACTGAGCCGGGTTTTTTGT 138472 28 100.0 32 ............................ TCAGCGCAAGGTACGGACACAATCGAGGTTGC 138412 28 100.0 32 ............................ TGGAATATTTCGCCCATCGCACGCTGGCTGTC 138352 28 100.0 32 ............................ AGCTGTCGCTGGTCTCCATTGCGGTCATATTG 138292 28 100.0 33 ............................ ATCCCAGCGACTGCCGGGACGTTCGTGATCGGC 138231 28 100.0 32 ............................ CGCTCGCGCTCGATCCGCTGCCGTTCTGTGGT 138171 28 100.0 32 ............................ AGCACCCAATTGATTGATGAGGCTATGACGTT 138111 28 100.0 32 ............................ TTTATCGTCGGTAGCCAGTGAGTAAATAGCTT 138051 28 100.0 32 ............................ TGAACAGCGAGCCAGATGAGCGACTCAATGCG 137991 28 100.0 32 ............................ AGTTCCGCAGAGAGAATTGCCGCCATTGCCAC 137931 28 100.0 32 ............................ TTCTGCAACTTCGATCTCTTTCGCTTCTTCCC 137871 28 100.0 32 ............................ GCGCCGCAATGCTCAAAGACAAGCCTGTAACA 137811 28 100.0 32 ............................ GGCCTCTACCCGACAACTGCCCGCACTGTGCA 137751 28 100.0 32 ............................ ATGATCTACCGCCAGAATTAATGTGAAAATGA 137691 28 100.0 32 ............................ ACTAAAGCCGATTCTGAATTTAAGTTCATTCA 137631 28 100.0 32 ............................ AGTGATTAACATCCGTAAAGCGCAACGTGAAG 137571 28 100.0 32 ............................ GCGTTGTCATCTTCGGTAAGCTGGCTGAAATT 137511 28 100.0 32 ............................ AGTGATTAACATCCGTAAAGCGCAACGTGAAG 137451 28 100.0 32 ............................ ATTCCCGGCTATCGCTCAACACTTCGCGCCCA 137391 28 100.0 32 ............................ TCGGCTGCTAATACCACCAGTAGCAACTAATA 137331 28 100.0 32 ............................ ACTACAGCCACATCGACAACAAGCGCAAATGG 137271 28 100.0 33 ............................ CCTCGGTGTTTACCGTGCCGAACCCGTCCTGAC 137210 28 100.0 32 ............................ GTTGAAGCGCTCAAGGTCATGGATGCGTGGGG 137150 28 100.0 32 ............................ GTACTTGAAGCCATTCAATCTGTATTGAAATC 137090 28 100.0 32 ............................ TGTGGCACTGGACTGATGCGCGACTTCACTGA 137030 28 100.0 33 ............................ TGACTCGCCCCCACCTTGGGGGTTTTTCTTTCC 136969 28 100.0 32 ............................ TGCTGGCTACGGGCCGCAATCTGTATCGTCCC 136909 28 100.0 32 ............................ TGTAGGCGTCGAATTAAATCGCTCATCCTGTG 136849 28 100.0 32 ............................ ATCAACGCGATAACCTGTTAAATATTTTGATG 136789 28 96.4 32 ..................C......... CAGACGCCGTCGCTGCCGACTGCCTGAACTTT 136729 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACAAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : TAGTTTTAAGCGTCATTATCTGGCTATTATCGAGGTAGCGCTATCGGCAGAGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAGTGAAGCGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 147226-147852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJF01000011.1 Pectobacterium brasiliense strain S2 S2.scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147226 28 100.0 32 ............................ AGAGTAGGTCTGAACCCAGTTGATTCAACGAT 147286 28 100.0 32 ............................ AATCCCAAGTCTGCCGCCGAACAAGGTCAAGA 147346 28 100.0 32 ............................ ATCAAAATTGCCGAAGGCCAGTGGTATCGTAC 147406 28 100.0 32 ............................ GACTTTCGCCAGTTACCGTTCGCCGACGAGTC 147466 28 100.0 32 ............................ ATGGTTGGCTCTACGTCGCAGAGGGGCATCAA 147526 28 100.0 32 ............................ AGATTCGCGGCACGGACTTCGCGATCAAGCAG 147586 28 100.0 32 ............................ GTTACCGCTGATCCTGCGCAACTGCGCTGTGA 147646 28 96.4 32 .............C.............. CGACGCGTACAGCGACATAGAAACCAGAATCT 147706 28 96.4 32 ...........C................ TGACCAGCGTTTTTGCGCTTTCGGATCCCCAA 147766 28 96.4 32 ...........C................ CGTGAGGTGCCACTTTGTTTGATGCTCCAGAC 147826 27 89.3 0 .............C.........-..T. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTATAGAACATGGTCCGCTACAGAATGCTCCTAGCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGCTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACCTAACA # Right flank : ACTATCGAAATGCGTCGCTGGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCACCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACATTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //