Array 1 2369218-2369691 **** Predicted by CRISPRDetect 2.4 *** >NC_003552.1 Methanosarcina acetivorans C2A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2369218 37 100.0 36 ..................................... CAATATGTGTTGAGTTGTCTGCGTCCCGTGGGTCAC 2369291 37 100.0 36 ..................................... CACACATGAATTATGAGATTGGGAAACAGAATTATT 2369364 37 100.0 35 ..................................... TATGCTGTAGCCACCAATAACGATGCTGCAAACAC 2369436 37 100.0 36 ..................................... TTGCAGGGGTAATCATGACTATACAATTAAGAAACA 2369509 37 100.0 36 ..................................... TGAATGCTGTAATAGCTGTACTTTTAATTTCCATTA 2369582 37 100.0 36 ..................................... CGGTAACCATCACTTTTGAAATTTCCTCTTAACATT 2369655 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 100.0 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTAAGCACTACTTTTCTAAAGAAAATTATTACTCCCTGTTTAGAACCAAATTTCTATAAATAAGTTCTGAAATTTTTGTGTTACTAATATCAACTTAAGAAGTAGTAAAGTACGATTAAATTATAATTTTGGCCAGTTAAGAAATTTTTTGAGAACTTGCAATAAAACGCACATGAAATTCTTCGAATAACAGGCACAAAAAGATGAAAGTACGCATGGACTTTCATACCAAAAGAATGATACCTGCACAAATTCACAAAAAAGATTCAGTAAAAAGAATTGAAACTATATGCTGATGAAAAAGGTTACACGCACAACAGTAGCAATCAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTCTCCATACCACTATAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGGCGATTTCAGGCCTTTTCCGGCCAAATAACGGAAAATTTTGCCCT # Right flank : CCAGGTCAAACATGCCATATTCAAAATACATAAGAAGGAGTCGGCTCCTAGGAACGAAGATTTGCAAGCGAAACGTAAGCCTCTGACTTCGCCTGTAAGGTTCGAAGACGTCGGGAAGACGCAGGACGTTAGCTGAAATATTCTGCATACAAAGATGCCGACGTCCTGTCGGCGATTTGCTGTGCCACACACTGGAAAGAATATCTTCTGTCTGAATTATTTCTAAATATAACTAAAAATATAATATGAAATAACGATTTGGGGATGTATTGAATGTGATTAAAACAATTCTATTTGATATCGGTTCTACTATTTTGTACGAAGAAGACATTTATAACGCTTTACTGGAAAAAGAACGAATCATTCTTAATCAAAAAGGTTATAATATTTCCGAAGATGAATTTAGTACTGTTTTAAACTCGAGTATTCTATGTAGAGAATCAAATCCTATTAGAAGTATTGCGTGGAAATGTACAGCACCCGATAAAGCTGCTTGTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 2378684-2381265 **** Predicted by CRISPRDetect 2.4 *** >NC_003552.1 Methanosarcina acetivorans C2A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 2378684 37 100.0 36 ..................................... CAAACCATTGCTTCTCTCCTTATTATGTGTATCAGG 2378757 37 100.0 36 ..................................... AAAGATCTTATTTTGCCTAAAGGAATGTACTATCAA 2378830 37 100.0 36 ..................................... CCCGGCAACATATCCAGTTGTTGTAGATTTTTGAGT 2378903 37 100.0 37 ..................................... CTCCTTCGGGGCCTGTTGCGTACGACTTGAAATCCTT 2378977 37 100.0 35 ..................................... AAAATTGAGCAATATAAATAAAATTGATATGTTTT 2379049 37 100.0 36 ..................................... CCAGCCGTTTGTCTTCTGTTTTCAAACCATATTTTT 2379122 37 73.0 169 ......................G.GCCTATCC....A GTGTTGTGACCTACTGTAACTTACCATTAGCAATATACAAAACCGAAGAAGATGCCCTACTATTATAGACCTGCTGTAACTTTTCGATCGCATTACCGACTTTTCGGATAGGCACTAAAACAAGGATTGAAACCAAGCTTGAAGTAGATCCAAACCACGAAGCGTATAT 2379328 37 100.0 38 ..................................... TCCGGAACTGGAAACCGTGTAATGGTAACCGATGACTA 2379403 37 100.0 36 ..................................... TCCTCGATTTGATCACAGCATTTCTTAACGTGATAC 2379476 37 100.0 39 ..................................... TAATCAAGCTCTTTTTGAGCCTGGTTCCCGGGTTCGAAT 2379552 37 100.0 36 ..................................... ATCTCTCAGGTTGGGATGATATCGCCGAAATACGGT 2379625 37 100.0 38 ..................................... TTACAACAGGGCTATGAAAAACACTTTGTACAGAAAGT 2379700 37 100.0 34 ..................................... CTGAAGGCTTTCCCGGTAATCCCGAATTCAGCGT 2379771 37 100.0 36 ..................................... ATATAAGCGTCTTTTCCTGTGTATGTGATCCACTTT 2379844 37 100.0 36 ..................................... CCTTGTTGGTAATTAGTACAATGTTACCAGTATCAG 2379917 37 100.0 38 ..................................... ATTCCTCCAACTGCTTTTTTAGCTGGTCTTCTGGAACT 2379992 37 100.0 36 ..................................... ACTCTAAAAGAAGAGCTTAATGAACTACGTATAGAA 2380065 37 100.0 35 ..................................... TACCCAACTGTTCAAATTTCAAAGCCACTACGTGA 2380137 37 100.0 37 ..................................... ATATGCGTTCCTGGCTTCTATAACCTCATCAGTCAGG 2380211 37 100.0 38 ..................................... TATCTGGTGTTACAGGGGCTATAATTGATGTGAAAAAA 2380286 37 100.0 36 ..................................... AAAGATTCCAGACGGCACCATTGAATGTGTCGAAGT 2380359 37 100.0 36 ..................................... CAATGTTTTTGTATTTTATCACGGTCTCACCAGTAA 2380432 37 100.0 35 ..................................... TCTTTTTGGAGGCTACAGGAATTACTACGGACACC 2380504 37 100.0 34 ..................................... TTATATTTCGACGCAAATCACGAAATATGATAAG 2380575 37 100.0 35 ..................................... AAAATTGCTGTAATGTTCCGCAATCCTCATTATTA 2380647 37 100.0 37 ..................................... ATTTAGATTTTGAGAGGATGGTAAGGCACAAATCTGC 2380721 37 100.0 35 ..................................... TTTTAGGATCCTGTAACAACTCTGCACGCTTCATA 2380793 37 100.0 36 ..................................... AAAGATTGAATGGGTATTCAGAATGAACTTCTTCCC 2380866 37 100.0 34 ..................................... CTTACATGGTAGGGATATTAGCAGAGAATGATAA 2380937 37 100.0 41 ..................................... TGATGGACATTAATATTTTGACAGTTGTCAAGCCTCACCGA 2381015 37 100.0 36 ..................................... TGTAATTGAGGGAAATCATGAATCCTGACCTCTACA 2381088 37 100.0 37 ..................................... TCTTTACAGCAAGTTTTTCACGTTCATTCTGTATCCA 2381162 37 97.3 30 .........................G........... AATCCTCCCTTTCCTTACGACATTTTTCCT 2381229 36 73.0 0 G..-..A.A..GCT....GC....T............ | A [2381234] ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 34 37 98.3 40 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AATCATTTCAACTGTAAGTTTATTCATCATAGCGCCTGTTGTCAAGTTTTTCGACCTCGACATAACTCAAATCCCGACAAGATATTTGATTTCATTATTAGCCGGAATTGTTGTCTCTATTGAAGCACATATAGTGTCGGATATGATATACACCAAAGTAAAAACAAAATCCACGAGAATAAAAAAGAAACTGAAAAGTGTTCACACCAGCAGGTCGTAAAAACAGAATAAACCAGCTGTCAATTCATTTTCAATGAATTATCTGCCGCTGATCTTTATGTACTCTAATGTAACAGGGAGATCAGCGGAAAAAGTCAAGAAATATATATGAAAACATCTTAACTCCTAGTAAATACATTGATTGCTTTCCCCGAATATCTGCGTTTAAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTCAGGTCCCAAAAAAGAGGTGATTTTAGGCCTTTTCTGGCGTAATAACGGAAATTTTTGCCCT # Right flank : CTAAAAGGCTTGAAAATCATTCATGGAAATAAGGATCAATTTCAAAAGCTTTTTAACCGGTAATTTCTTTTTTAATTTATATAATAACTTTTAAGCTGATTTTTTGCTGGTTAATATGAAACTAAAGACCCTCGAGATGACCTTCAGGTCCACAAAAGAGTTTAAAGAAAATATCCTCTGCACCCGCGGTTTTTTTGCAACAAAATTCAATGAATACGTCCAGCTCCACAACCACATAACAGACAAGCTTGTGTACAGATACCCTACAATCCAGTACAAGGTTATCAGAAACAGGCCTCTAATTCTGGGTATCAACGAAGGAATTGATGTCCTGAAGGAGATTTTTGATGACTTTGACATTGTAAAGCTTGGAGATACTGAATACGAGATTATCCAGAGATCCATGACAATCAAAAAACAGGAATTCGGGCTTTCGGACAAGATTCATTTCTATGAATTCCTCACTCCATGGTTGCCGATTAAACAGGAAAACCATGAAA # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [13-12] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 3 4525552-4523522 **** Predicted by CRISPRDetect 2.4 *** >NC_003552.1 Methanosarcina acetivorans C2A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 4525551 30 100.0 36 .............................. TGAGATCCACGTATATATTATTTGTCGCGGTGGAAT 4525485 30 100.0 35 .............................. CTCTCTCATTTTCGGAGTGGCTCCGAGCATAGCAT 4525420 30 100.0 36 .............................. GTTATCCGGAAATCCCCGCAGGCGTTCGCATTCAAC 4525354 30 100.0 36 .............................. ATATCTGAAGTGTATATATATGAATATGAAGATGTA 4525288 30 100.0 39 .............................. GCATATCTTCAGTTTCGTTTCGATAGTCCTCTGCAACTT 4525219 30 100.0 34 .............................. TCATACTGCCTGACACTATGCCCCGTTGGATTAT 4525155 30 100.0 36 .............................. AAGGAGAGAACATGAAACAATATGAAGTTTCAGCAG 4525089 30 100.0 35 .............................. GGTCTCAGATGCGGTTTACCTGGCATTCTTGAAGT 4525024 30 100.0 35 .............................. CTTGAATATGAACTCGATGCGAAGAATGTAAGGCT 4524959 30 100.0 38 .............................. ATTTTCTCCTGGATCTCAGGAGTTAGCTTAGACTTCAA 4524891 30 100.0 38 .............................. AACTGCTTAGAGGCATCTATCGAAGGCTCACTTACAAA 4524823 30 100.0 40 .............................. TTCTAACATCCATCTCATACCGAGAACTCAACCTATGATA 4524753 30 100.0 36 .............................. GTCGGTGTTGTCCAGGTCCCTGCTCCTGAAGAAATC 4524687 30 100.0 35 .............................. TAAAAAAGATGAGAAACCATACGAATGGAAAGATT 4524622 30 100.0 40 .............................. TAGTTTATGACGTTAGCTACCCCTGCTGAATCTCCTGAGC 4524552 30 100.0 41 .............................. CTCGTCGTCCTCTATGGTTACGGGAGGCTTATAGGTATAAG 4524481 30 100.0 36 .............................. ACAGCTTGATTTCTTGAGAGTCAACAAAAAAATATA 4524415 30 100.0 36 .............................. GTCGTCAATATAATTACGGCTGCGGCTCGTGCATTT 4524349 30 100.0 36 .............................. ACATCTTGGAAAGACACATCAGCCGTACTTGATTCT 4524283 30 100.0 36 .............................. ATCACTAGCATTCCTTACATTGTGATGAATGTCGTT 4524217 30 100.0 34 .............................. GCACTATTATTTTTTATAGCAACAAAACAAAACT 4524153 30 100.0 34 .............................. ACTATGTATGAACCATTAGAGGCTACTGTGCCGA 4524089 30 100.0 38 .............................. CACATCTGCACCGGTGTAACATGCAACTGTTTTTGAAT 4524021 30 100.0 36 .............................. CGATTCTTTTTTCAGGTTCAAGGACCTCAAAACTCT 4523955 30 100.0 36 .............................. TGGATATCATCAGGACACCAATTGACATCCTGATAG 4523889 30 100.0 37 .............................. GGTCATATCTGAGGATTTTAACCATGATTCAAAGGAT 4523822 30 100.0 36 .............................. CCGCTTGAAAGGTATGATAGCGTGAAAGTATATGCA 4523756 30 100.0 38 .............................. GGTTTGCATGAAGCCATTCGCTACAGCTCCTGCAACCG 4523688 30 100.0 38 .............................. GCAGCAACAGCAGCCGCAGACGTTCCCATTAAAGTTAG 4523620 30 100.0 39 .............................. AATAAATGTAAATGGGAGACGGTTCCGAGTCCACGCACG 4523551 30 96.7 0 ................T............. | ========== ====== ====== ====== ============================== ========================================= ================== 31 30 99.9 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : AACTGGGTTCAGAACAGTGTCTTTGAAGGTGAACTCACAAAAGCCGAATTCCTGAAAATTAAGTCAAGGCTTAAAGAACTCATCCAGGAAAGTTCTGACCATATCATTTTCTACAGCTCAAGAGACAGAAAATATCTTGGAATCGAAGATCTAGGAACTCCAAAAGCAGATACAAGCAACATAATTTGATCTGCCAGATCTGTAATTTCATTCCTTAATCAATCCTCCTCTATGATCCAATTCTTTATTAATATATTTCTCATCGTTCCTCCATTTACAGTTCCGTTTTTTCTCTTTTTTTCGTGGATCCTTATATATGAAGCTCCAGATGAACAATCCACGAAACCCACTCTTAAATCTCTCTCAAAAAAAGAATACTTTTATATCGTAAAGCACACAAATAACATTGCCTAAAAACAGCATCATAACCCCGAATTCTTCAACTTTCGTTTGAAAAGATCATGCATCTAATTTGCATAAATTCGGGGGAAATTTCCTTG # Right flank : GATTAAGTGTATTACAGGGATCACAGGGATCCTTAAAGCCAATGGTTAAAATTAGTTCTTAAAGTAAAATCCTACTTAAATAGATATTTAACTTTTTTTATTTGATGAAAAAGGAAAAGTTAATTATTTGAATAGTTTTTTCTATTTCAGAATGTTTTTTTGTGAAAGTAAGTTTTCTGGAAAATGGGAGTATAAATAATGAGCCAGAACTTTCTTTATAAGTTTACTGGAAATCCTTTTGTGGATGCTGGGATCTGGGCTATTTGCGAGTGGTCGGGTAGAAAAAAGCCTGAGGAAGTAAAAATTGAAGATCTCCAGGAGATTACCTCAGACATGGTTCCTATATATTTGACCAGTGAATGGGTAAAGAATCTTCACTCTTTTTTTCCTAATAATGCCGTTACTAATCCTTCAGTAAAAAATAAGAATCAACGACTTCTTGAGTATTTAAAGTCCTTAGTTAGTCAAATTGAACCTATAGATGTATTAACATCTGGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //