Array 1 110685-107178 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKE01000002.1 Salmonella enterica strain BCW_1999 NODE_2_length_350854_cov_0.281441, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110684 29 100.0 32 ............................. AACTGAACGGCGCACCGCTGCTTGTGGCGTAC 110623 29 100.0 32 ............................. GTGACAGGATAACAACGTATGGCAATATATGC 110562 29 100.0 32 ............................. GTCGCTGTGGCGGCGCAGACAGCTATCTTATT 110501 29 100.0 32 ............................. TACGTCGACTACTGCCGTCCGATTATCGACGC 110440 29 100.0 32 ............................. AGAATATTTTCCATGTTGCAATACCTTTATTT 110379 29 100.0 32 ............................. GAGATGAAGCGAATCAAGGAACTCGAAGCCGA 110318 29 100.0 32 ............................. GTTATACAGATACCGACCGATTCCCCACTGAA 110257 29 100.0 32 ............................. TTACCTGATGGTTCTGCGTGGAACGGCCCTGC 110196 29 100.0 32 ............................. ATTGTTGAAATAGCAAACGCGTTAGGTGTTAA 110135 29 100.0 32 ............................. GCCGCATTGCGACCTGATTAGATATTTGAAGT 110074 29 100.0 32 ............................. CGACTCCCGAGATACAGGGCAGATTGAACAGG 110013 29 100.0 32 ............................. TCGTCATTCGATTCGGGCCAGTCGATATCCAG 109952 29 100.0 32 ............................. CGATCAGAGAAATACAATGCCGTTGTTGTGTC 109891 29 100.0 32 ............................. ACCAAAACCGGGACAGTGACGCACGTTTATCA 109830 29 100.0 32 ............................. AACTACGGTTTCGGCAACCACGCAGATAAATG 109769 29 96.6 32 ............................T GTCAGGTTGGTGAACTCGCCGTTAATATACGC 109708 29 100.0 32 ............................. CCCATGTATTTGTGTTTTAAAACTCTTCCGTC 109647 29 100.0 32 ............................. AGATTAGAGATTATCTGGAGGCATACGCCGCC 109586 29 100.0 32 ............................. GTGCGAAGGAGGCCATCACTGACCTGGTTGAC 109525 29 100.0 32 ............................. ATGTTCCAGTCCGGCATCCTGGAAGACTGGGA 109464 29 100.0 32 ............................. TCTTCTGTAGCGCCTGCTTACGGTCAATTGTC 109403 29 100.0 32 ............................. CATTTGTTAAACACCAGACCACCACCAATAGT 109342 29 100.0 32 ............................. GATGTCTGCGTCATAGCGATAGCGTTAAGGCC 109281 29 100.0 32 ............................. AGTTCCGCTACATGCAGGTGCACTATAGCGAC 109220 29 100.0 32 ............................. GAATATGGTGGTGGTTATTGGTTAGGCAAAAT 109159 29 100.0 32 ............................. CAGAATTGAATGGTTTCTTATACCTGACGTTA 109098 29 100.0 32 ............................. CGCGCGAATCTGCTATTCAGTACGCATCAACT 109037 29 100.0 32 ............................. CCATTATGCCATTGACACGATCAGCTGATGGT 108976 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 108915 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 108854 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 108793 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 108732 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 108671 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 108610 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 108549 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 108488 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 108427 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 108366 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 108305 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 108244 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 108183 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 108122 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 108061 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 108000 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 107939 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 107878 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 107817 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 107756 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 107695 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 107634 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 107573 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 107512 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 107451 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 107390 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 107329 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 107268 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 107207 29 96.6 0 ............T................ | A [107180] ========== ====== ====== ====== ============================= ================================ ================== 58 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCGGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129122-127447 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKE01000002.1 Salmonella enterica strain BCW_1999 NODE_2_length_350854_cov_0.281441, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129121 29 100.0 32 ............................. CATCGACGCGCATTGATTGTCTCATGGTAAAC 129060 29 100.0 32 ............................. CATCCCCGTTGTAATGTTTTTGCCTCGATGGG 128999 29 100.0 32 ............................. ATGCGCCTTTGTTAATTGTGGTGCTCGCCAGG 128938 29 100.0 32 ............................. GTGAAATGATGGCCTCTTATTACGAAGACCTC 128877 29 100.0 32 ............................. CGCGTTGTGTCGAGTTCCTTCGAATGGCATAT 128816 29 100.0 32 ............................. CCAACTATCGCCGAAAATCAGGCATAGATAAC 128755 29 100.0 32 ............................. TTGATAAAACAATACGGGGTGCTCATCGTCTT 128694 29 100.0 32 ............................. AGAGGTAATCAGCCATCCCTCCTTACTTGATA 128633 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 128572 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 128511 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 128450 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 128389 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 128328 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 128267 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 128206 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 128145 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 128084 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 128023 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 127962 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 127901 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 127840 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 127779 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 127718 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 127657 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 127596 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 127535 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 127474 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //