Array 1 1531-2781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWE010000019.1 Enterococcus ureilyticus strain DIV0896c scaffold1.19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1531 33 100.0 35 ................................. ATGTTTATCAATTGTTTATCCCCTTTCTTAAGCAA 1599 33 100.0 34 ................................. TAATAGTATTGGATCTCCAATGGACTTTATTAAG 1666 33 100.0 33 ................................. ATCACGAGAAGAAGCAACAAAACGTATGAAACA 1732 33 100.0 35 ................................. TTTTGGCTATGTTTACGATGGTATAAGAATAACAT 1800 33 100.0 37 ................................. ATAGCGTCATTAGCATCACCGAAAGCCCTACTATTAC 1870 33 100.0 34 ................................. AATTTTTAAATTACCTAGAGAAACTGGTAGAAAT 1937 33 100.0 33 ................................. AGACAGACGTACTCCAGCTGGATCTCTTTTCTG 2003 33 100.0 35 ................................. TCGTACTCTTTCGGAAAGGCTTCACTATAGTAGGT 2071 33 100.0 35 ................................. AGAGGTGGAGACAAACAAAAAGAATTAGGAAGCAT 2139 33 100.0 33 ................................. CGTTTTTTTGATTTGGATGATGAACAAACTAAC 2205 33 100.0 36 ................................. TGCGCTGTCTTTAACAACAAACGAAAGAATACCCTC 2274 33 100.0 35 ................................. AGCAAGGCTCAAAGATGCGCAAATTGAGAATAGGG 2342 33 100.0 33 ................................. AGATTCCGAATTTTTGAAGGGATCCAAAACAGC 2408 33 100.0 37 ................................. TTGATACCCTTTATAATTGGTGTAATGATAGACAAGG 2478 33 100.0 35 ................................. CCGGAAGCTGACAATGTATTCCAAGCTACTGTATT 2546 33 100.0 35 ................................. AATTTACAGGAAACTTTTATTTACCTAATGTACCG 2614 33 100.0 35 ................................. TAACTCAACACCGTCAAAAGGGTCGTCCTTATCTT 2682 33 100.0 34 ................................. TACGGTCTTGCTTAGTCGTTTTGGATTGCCATTC 2749 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 19 33 100.0 35 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : AATGATTTTGGTGGAATCAACCATTCGACTGTTGTGATCGGGAACAATAATAAAGTTACTAATGGGAAAAATCAAGAGATTGATTGGGCGCAATTTTCTACAGAAATTAGAACAATGTTGACACAGCTTCCCCAAAATAGTGAAGAATTTCAGGCTAGTTTGAAATTACTGATAGAATCTGAATCAAAAGATCAAGGGAAAGTTGCTACTTTTTTAAAGAAACATGCACCGCAATTTACTTCGGATGTGTTTAGCAATTTAGCAAGCGCAGTTCTTTCCGATACGATCAAGAAATTAATGTTTAATATGTAGGTGAATAAAGTTAAGTGCTAAAAAAATGTGGGTGCGAACCCTAAGTGTACATGAAATAGCTGGGGGATCCGCACTGATTTTTACTGAGAAATGACTTGTTTTCAGTGTTTTTCTCATTGAAATCTCATTTTACAAGTTACTTTAGTTGGAAATAGAGTATTTTTTTAGAAAATCACTCTATTTTCACG # Right flank : TTAGCGGTAGATCCTGATTTTTATAATCAAAGTTAGGTCTCACTCTAACAAAAATACACTAAATCCTTAAAACCATCTAATTAAACAGATGGTTTTTCTATTTACGCTCATTATTTCTCAAAAATTTCCGTAAATAGCAAAGGAATTGAGTGGTCGCAACAACATTTTAAGAGGTATAATGAAAAAAGCGATAAAATAGATAGAAACGGCTATAGAAGATTCTAGAGGCGTTAAAAGGAGAGAACATATGATAAGAAATGAACTAAAAAAGAAAGCTCAAACCCATCTACATGGACATTACGGAAACTGGAGTTTGATTGCTATTTTACCTTGTGCAGTATTATTTATCTATTTCTTTTCTATAATTTTCTTGTTTCAATCGTCAGCGCACGTTAGTGATCCGTCAAATGATTATCACTCTTGGCAAGATGAGTATACTGAAAAATCGAACCGCACTTATTCTAACTATGAAAAAGGCTATGATGATGGCTATTCAGACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.80,-3.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44049-45099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWE010000011.1 Enterococcus ureilyticus strain DIV0896c scaffold1.11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 44049 33 100.0 33 ................................. CATGTTTTAATAGTTATGTACTCGGACGAAAAA 44115 33 100.0 35 ................................. CCATGCGGTCAGACATTTATACTTGACCGCACGAT 44183 33 100.0 34 ................................. AATCCTAAAACTCCACAATTTAACATTCCTACAA 44250 33 100.0 35 ................................. ATCATCAAAGGTCTGGAACCCAATCAGCTTAAATG 44318 33 100.0 36 ................................. ATCAAGTTAGCTGAGAAGTATGCACCCGAGTGGTAC 44387 33 100.0 34 ................................. TGGCGGAAGCGATGCCCCCGTATTTTTCGCATCG 44454 33 100.0 35 ................................. TGGTTTGGGATCTGGGGGTGGAGTTGTTGATTTAC 44522 33 100.0 36 ................................. AAAATTAACAATACCATAGTTGTTAAACTTAAATCT 44591 33 100.0 34 ................................. ACCGCTGGTATCTTCCCTTCCGTAGCTTCTTTTT 44658 33 97.0 34 ..................T.............. GCTTGACCATTTAGTGTAATTGATTTATTAACAG 44725 33 100.0 35 ................................. GTACAATTCACTTGGTATTACATAATAGTTAAAAT 44793 33 100.0 34 ................................. GATTACAATGATTATCAAGATCGTGGTATGGCCT 44860 33 100.0 35 ................................. ATAATCTTTTCGTGGATCTTGAATATGTACTTAAT 44928 33 100.0 35 ................................. TTTTGGTGTCATTGTCAAAATCCACCTTTCCGTGG 44996 33 100.0 36 ................................. ATTAGTGAATTATCGCTTTTCGGAAACAAAGCGTAC 45065 32 87.9 0 .......................-TC..A.... | ACC [45087] ========== ====== ====== ====== ================================= ==================================== ================== 16 33 99.1 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : GAACGTTTTGAATTTCTGCAAAAAACTGGTGTGAAAGAAGAAAAGCAATTATCACTTGATTTTGAGGAATCATTGTTAGTTGCGGAAGAAAATCCAGAAATTTTTGACCAATACTCTCATGTAGTTTGGCAAAAACGAGTATTAGGAGAAGTAACACATATTTTCAGCCATTTAAAATGGCATATTTTAGTTTTCTATGGACGAAAAATAGGAGAAACTATTACTGATGAAAATCAAGCTTGGGCAACAAAAGACGAATTTTCAAATTATGTTTTTCCAAAACCACAACAAAAAATGGTAGAACTATATAAAGAAGAATTTGGAACTACAGAATAATTTTTGGTGCGAACCCCAAGTGGACATAAAATCTCTAGGGGATCCGCACCAAAATTTTACTGATTTTAGTTAGGAAATAGACTTTTTCTCATTTTAATTTAATGTTATACTGTGTTTAGTGATGGAATAGTGGAAATATGTCATGTATTTCAACTATTTTCACG # Right flank : TCTATTCCAATGTCAGCCTCCAAAAACTAAAATCGAACGATTTATTTTAAAAGATAGTTCTCATTACTGTAAGAAACCAAACTACTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAGAAATTAGTAGCTTTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACAATTCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACGAGCGAGTATTCTTTAATCGGTGTCAACGATCATACATTGGTAACAGAGTCTGACGGGCGTCGTTGGGTTACTCGTGAACCAGCTATAGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTGGCGTCACCGTATCTTTTAGATGATGAAGCATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19855-19215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWE010000040.1 Enterococcus ureilyticus strain DIV0896c scaffold1.40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 19854 33 100.0 33 ................................. TTTAATAGCCATTTCAAGCTCCTTTCTTTTTGC 19788 33 100.0 36 ................................. AGGAGTGGTGAAACACTTTTTGCTGAAGGAGGAAAC 19719 33 100.0 36 ................................. GATTTGTTGCGGTGTTACTTCGATAGATTTTGTTTT 19650 33 100.0 35 ................................. TTGATATGATTAATCAATCTGAAACAAGGTTAAGA 19582 33 100.0 35 ................................. TTGATATGATTAATCAATCTGAAACAAGGTTAAGA 19514 33 100.0 33 ................................. ACCAAATATCCAAGCATTACCAGCCATTGTAGA 19448 33 100.0 35 ................................. CGCGCAACAGATATAGGTTTCGTGGTCTTCCGTGA 19380 33 100.0 34 ................................. AATTGAACTGTGATATAATCAATTTGTTAAAAAT 19313 33 100.0 33 ................................. TTCAACAACTTCTTCCGTTGTTACTGTTTTTTT 19247 33 81.8 0 .......................TTT..T.TT. | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 98.2 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : TTATGACAAATGCGCAAGCAGGTGTAAAAAAGATGACGATCAGCGCTGTACATGCTGGAAAGATATTTGTTGATATTTTAGGAAATAATACAACAAAAGTTATTTTAGATGAGTCAGGTGCGGGGGATTTTCCAGTGAATGGTGGAGAAATTTCTATTTATGTAAATGAAGCTATTGTAGAACGATTACGTAATGGGTATGATAATGGGATTAATCGGAAGGAAGAATCTATATAAGTATCAAGGTGCTAGGAGCCAAATAGAGCGTGACTTATGACAAGATTGTGATTATACTATATATAAGTGATATAAGTGAAAAGCCATTTGTTCGCATTGAGATTCGGTGCGAACCATAAGTGCGCATGAAATCTCTGGGAGATTCGCACCAAATTTAGAGAGGAAAACAATATAAATAGTTGTTTTTTCTCATCGAAATCACATTTTAATGTGATTTATAATGTGTAAAAGAGCAAATAGGTACAAATTTGCTGTCTTTTCACG # Right flank : AACTTACGCGTCTATCACTAAAGAAAAAAGCAACACACGATTATTTTATTCTCTTAAAATACGAACTTAAAAAAAGAAAATATGTTCTATAAATTCCATCATTATTAAAGAATTTTCCAGCTATATTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCACGACAAAAGGAAGCCGTTTTACATACAGAAGGGCCTTTACTGGTTATGGCGGGCGCAGGTAGTGGGAAAACAAGAGTATTAACACACCGCATTGCCTATCTAATTAAAGAAAAAGATGTTAATCCATGGAATATTTTAGCAATCACTTTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGGAAATTACTAGAAGTTGGCGGAAATGATGTTTGGGTTTCAACATTTCATTCAATGTGTGTGCGAATTTTACGCCGTGATGTCGATCAGATCGGTTATAATCGT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 63400-62824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWE010000015.1 Enterococcus ureilyticus strain DIV0896c scaffold1.15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 63399 34 97.1 34 .................................T CTAGATCAACTAAGACGAGTAAAGGGAATTGGAG 63331 34 100.0 35 .................................. TAATTGGTTATTAAATAACGGTTTCACATTAGTAG 63262 34 97.1 34 .................................C ACGTGAAACATTTTGAAATGGTCTCACAATCGTC 63194 34 100.0 33 .................................. AGTTGCGGGTCTTGACCCAACAAACCGTATCAT 63127 34 100.0 32 .................................. AAATTCATTCGGTTCATACGACAACTTTTTTG 63061 34 97.1 35 .................................T AGGGATAGACGAACATGACCCGCCAACTTGGGCAG 62992 34 97.1 33 .................................C TCAAATTCTAGTTCTAAGTTTAAAAAATCATCC 62925 34 97.1 34 .................................G CCTGTATTCTCGTCAACCATTTTCCAAGGTTTAG 62857 34 97.1 0 .......................A.......... | ========== ====== ====== ====== ================================== =================================== ================== 9 34 98.1 34 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Left flank : AGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTCGCGACAAGTTCAAAAAATGGGACTCGTCGTTTAAGAAAAGTGGCAAAAAAGTGCCAAGATTATGGACAGCGTGTTCAAAATTCTGTTTTTGAGTGTGTTGTTGATGCGACGGAGTTAACGAAATTAAAGAAAGAACTGATTGATTTAATTGATGAAGAGCTGGATAGTTTGCGCATTTATCGATTAGGAAATAATTATCAAAATAAAGTAGAGCACATAGGGGCAAAGGAGAGCTTTGATGTAGAAGCGCCACTGATATTTTAATAAGAAAATTAAGTGCGAACCCTAAGTACACATGAAATCGCTAAGGGATCCGCACCAAAATTTAGCCATTTTTATTAATAAAAAGTTGTTTCTCTCATGGAAATTTAATTTTACAAGTGTTTTTTTGTGGAAAGGTGAAAATATGTCGTATATTTTTGCTAATTTCACA # Right flank : TAGCTGCTTCAGCTGCCAAAATATCAGTTTTTTGAGCCTAGCTCTATAACAACTTCAAATCAAAAGGATCAAAATGAAGATTTTTTCATCATCTCCTGATTGACCTGACTTAAATTACTAGGTACTCTATAAAAAAGGTAGGTGGGAGAATGAATGAAGTAGTCATTTTATTAATAGAAGATGAAGCAAGCTTAGCAAATTTCATTTCGGAGGAACTTCGGTTTGAAGGGTATAATGTCCTTTACGCCTCGGATGGTGAACAGGCATTGGAACTATTTAAACAAAATCAAAAAAGAATCACCATGCTGCTACTGGACTGGATGCTGCCAAAATATGATGGGATTACAGTTGCTAGAAGGATTCGAAGAACTAGTCAAGTACCAATCATTATGATGACCGCAAGAGATCAGTTGACCGACAAAGTGACGGGTTTAGATGCTGGTACGGACGATTACATTACAAAACCTTTTGAGATAGAAGAACTATTAGCGAGAATTCGA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //