Array 1 4178-124 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUS01000016.1 Bifidobacterium pseudolongum subsp. globosum strain 2019B Contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4177 29 100.0 32 ............................. AAATGGCCCTTGCCGGGGATCTCGAGGAAGCG 4116 29 100.0 32 ............................. CAGCGGGTCAGTGCACGCTTGAGGTCGGAGTT 4055 29 100.0 32 ............................. AACGACCTGAGAAACGTTATGACGAGCACGAC 3994 29 100.0 32 ............................. GCGGTAGCGCGTTTTACCCCACGGGTGACGGT 3933 29 100.0 32 ............................. GTCACCATCGGTATCAAAACGCCGGTGGCGCA 3872 29 100.0 32 ............................. TATACGGGTTTTACATGGGGAAAAACTCGAAT 3811 29 100.0 32 ............................. TGTGGACCATATGAGACGCTGCGCCTACACCC 3750 29 100.0 32 ............................. CAGCGGGTCAGTGCACGCTTGAGGTCGGAGTT 3689 29 100.0 32 ............................. GAGGCACTGAATGAAGAAACAGAGCCTGCACG 3628 29 100.0 32 ............................. GCATCGGCACGGCCGTGGAGAACGCGAAGAAC 3567 29 100.0 32 ............................. GCATATTCGGCAACGGGTTCCTCATGAGCCAC 3506 29 100.0 32 ............................. CGCGGCACCACGGTCACGATGGCCGCATCATC 3445 29 100.0 32 ............................. CAGGAGCCTGACGCCCTGCGGGAAGTCACCCA 3384 29 100.0 32 ............................. AAGTGGCCCTTGCCGGGGATCTCGAGGAAGCG 3323 29 100.0 32 ............................. TCCGCGCCTCAACAGCAGGATGTCCGCGAGCG 3262 29 100.0 32 ............................. GTATACGATTTGTATTTGTCTTGGCAAGGGCG 3201 29 100.0 32 ............................. TTCACCGACTATGCAAATAGAGCAGACACTAT 3140 29 100.0 32 ............................. TGTCCGGCTCACCCGCGATAGCGGCCAATAGC 3079 29 100.0 32 ............................. GCGGCAACAAGCCGCCTGTACAGGCCACACCG 3018 29 100.0 32 ............................. TTGGAGGGTAATACGAGCCAGTTTACCAAACT 2957 29 100.0 32 ............................. GATACGAACAAACGGCGTATCCCCAAGTACGT 2896 29 100.0 32 ............................. TACAATGCGGCACATTGGGTAATCCCGTGGAA 2835 29 100.0 32 ............................. CTCGTGGCCTTGGTGGCTCGTCCGCCGGTCAG 2774 29 100.0 32 ............................. TATGCGTGGTCGAAGATCAAGGGCGCGCAAGG 2713 29 96.6 32 ............................T TTCTCGCCGGCGGTCATGGGCCGTTCGAGCGC 2652 29 100.0 32 ............................. GTCGGCCAAGGCTGGGATTGGGTCAAGGGCAA 2591 29 100.0 32 ............................. ACCGATTTCACCGTAGATCTGCACCTTGTCGG 2530 29 100.0 32 ............................. TTGACGTGCAGGGTTCGGGTGCGGCCGGTCAT 2469 29 100.0 32 ............................. GTCGAATTCCACGCGAGCACCGGGCGAAGCTA 2408 29 100.0 32 ............................. AGTGTGACATTCTACGATGTCAAGAACCTATT 2347 29 100.0 32 ............................. TTCTCCGTCGACCGTGTCATCGCTGAGCTCGG 2286 29 100.0 32 ............................. ACGGCGGCTGGCACGACGCGGGGTGTGGCCGC 2225 29 100.0 32 ............................. CACGCTGGTTCCATCACACCCAACCCGCTTGC 2164 29 100.0 32 ............................. CCGGCGTCCTATGGTCAGACCCCGAACGGATG 2103 29 100.0 31 ............................. CGCTGGCGGGATGGAGAACCCGATGTGGTCG 2043 29 100.0 32 ............................. TACCCAGTATTGCGCGACGAGTTTTTCAACAC 1982 29 100.0 32 ............................. GTGAGCGGCAGCACCTTGTCCACGGTAGGGTA 1921 29 96.6 32 ............................C ATGAGGCGGGAGTATTTCAGCGCTTATGAGCA 1860 29 100.0 32 ............................. ACGGCATGCTTAAAACCGTGTTCGTGCCGACC 1799 29 100.0 32 ............................. GGTGGCGGCGGAACAGTACAAGCGCGGAGTCT 1738 29 100.0 32 ............................. TTCGGGTTGCCGGTGCGGTTGCGTCTGCCGTT 1677 29 100.0 32 ............................. TCCGCACTCAGCGGCAACCACCACCACAAGGG 1616 29 100.0 32 ............................. TACATATCGTTGCGGTCGCTCTTGATTGGGGC 1555 29 100.0 32 ............................. ACCAGTACGACGCGATGCTCGCCCTATGCAAC 1494 29 100.0 32 ............................. GGCATGGCGGACTGGGCCGCCGGCCACGGTGG 1433 29 100.0 32 ............................. ACAACCATTTCGAGTTTGGCGACACCGAGACC 1372 29 100.0 32 ............................. TTCACGGGATCGTCGGAACTGTTGGATGGGTT 1311 29 100.0 32 ............................. ACCGAAGCGACCGCCAAAGCTGAGGACCTTCT 1250 29 96.6 32 ............................T CCGCCTGGCATGACTGCGGCCGAGAACCATCG 1189 29 96.6 32 ............................A TATCTTTGGCGATGAACCATGGGGCGTCGTCC 1128 29 100.0 32 ............................. ATGAAAGCCGCGTCCAAGAGCGCCAGCGAGTT 1067 29 100.0 32 ............................. TTCGGGCCAACAGTCCGATCCAGTTTCGCCAC 1006 29 100.0 32 ............................. GCGGATGCACCGGATTGGCTTTCACCTTGCGG 945 29 100.0 32 ............................. CAGCACTCGAGGCTGGCAAAAGCACCATCTAC 884 29 100.0 32 ............................. GCGTGTCACCCAAAATGTTCGTTCGCTGTATG 823 29 100.0 32 ............................. GCGACGTATATCGACCCGCGGACGCCGGAGAT 762 29 100.0 32 ............................. TCGTCGCTGGCCACGCTCCACCTGCGTGGCGG 701 29 100.0 32 ............................. AAGCGGCAGTGGAGACACCACAGGACGCGACG 640 29 96.6 32 ............................A CGAGGCCGAACGCGTCCTTGAGGAGGTTCCAC 579 29 100.0 32 ............................. GACTACCACCACATGCTGCGCCAGGCGTGGAG 518 29 100.0 32 ............................. AATTCGCTGGTCTTCTTCCATGCGTCCTGCAT 457 29 100.0 32 ............................. ACCTACGAGTCGCGCAGCGTCATGTACCCCGA 396 29 100.0 32 ............................. ACCGCGAGCGGTGACGTGCAGCAGGGCATGCA 335 29 100.0 32 ............................. CGTCTCCAGTCACAGGGGCCGACGAGTAGCGA 274 29 100.0 32 ............................. TCCAAGTCGTTGGCGCGGATCCAGATCACGTC 213 29 100.0 32 ............................. CACCGGGCGGCGGGTGGACCAGCACCGAACCC 152 29 89.7 0 ..........................GTA | ========== ====== ====== ====== ============================= ================================ ================== 67 29 99.6 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : GATTGTCATCGTGCTGACGGCTGCGCCTCCCAAGATACGAGGTCATCTCACACGATGGTTGTTTGAGATATCTCCAGGTGTGTATGTGGGAAAAGTATCAGCCCGTGTTAGAGAGTTGATTTGGGAGCAAATTCTTGACAATATCCGAGATGGGCGCGCCGTAATGGTGTATTCGGCGAACAATGAACAGGGACTGGAGTTCAAAACCTACGGACAGGAGTGGTCGCCTGTTGATTTTGAGGGCCTTGAGCTGATTATGAGGCCTCATGATCAAGGCGAATCCAGCGGGAAATCTCAGGGCGCATCTCGTAGAAAAGGTTGGAGCAATGCATCGCGATATCGTCGTTTTGGTAGATAGTTGTTGCTGCGATGTTAAACTGGGGATTGCGTGCCGACGTGAGGAAGTTTGGAACCATGATGACGTTAGCGAAATGTGACCGACTGTGCAAATCGAATTTTTCGAGTATTGTCGGAGTGCGTTTTGCTAATGGAATCAGACT # Right flank : ATTTTGTCAAGTCGGTGTTTTGGTTTTGGTCATGTAGTTTTTTCGGTTTTGGTCATTGGGGCATGCTGGTCGTGGTTGATTGGTTGTTGGTGTGGTCGAACATGAGGGCTTCGCTCATGCGTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //