Array 1 93445-94299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZX01000002.1 Porphyromonas canoris strain COT-108 OH1224 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 93445 37 100.0 38 ..................................... TCGTAATAAAATTTTTCTTGCATACTCTTTTGTTTTTT 93520 37 100.0 39 ..................................... GAAACAACTGACCATGAGATTGGATTCGTTCCCTCAGCT 93596 37 100.0 37 ..................................... CCTTGCAATTACAATCATAATACCCCTTGGTAACAGC 93670 37 100.0 36 ..................................... ATCAAGAGTTCCTGGTGTTGAAACTCTGATTTAGTT 93743 37 100.0 38 ..................................... AGCAATGTTGACCTTCCAAACTTTAGGCTGTTCAGGGA 93818 37 100.0 37 ..................................... TTTTTATTGAAAGGTTTACCTGTAAGCTTTTCAATCA 93892 37 100.0 38 ..................................... TGATCACGGGGGCTATAGTCCGCTTGTTAACCACTAAG 93967 37 100.0 39 ..................................... GCTTTCGCAGAGCCAAAGCCCTGACCGCGTTCTTGCGGT 94043 37 100.0 34 ..................................... TCTAATATTTCTCCAGCATGCCAATCAGAGGAAA 94114 37 100.0 38 ..................................... CTTTTTCCTTGATCACTAGCTCCAACTGCTTCTGACTC 94189 37 100.0 37 ..................................... TCTTTTGTCTCTCTATAATCTTTGAAGATGTAGGTGA 94263 37 81.1 0 ...........C.........T....C....TT.C.T | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 98.4 37 GTATCTATACATATTCAGTCAGTAAGACTATCAAGAC # Left flank : TCACACCGTATCGGGTAACGGACAGATCGTAGCAGAGCAAGGGGATTCCCTTAAAGAGATGTCGGTTTCTTCTTTCCGGGAACGGAGAAGAAGCCCTCACTCCTTTGCTCCTGTTGTTATAGAGGAAGAGGGTTCTGCTATCGGCATAAGCAGGGATACTATACTGATTCGCAAGGATAACCGGATAGTGAGAGAGCTGCCGGCTCCGGAAGTAAGAGAGATCTCTATAGAAGCAGAAGGTGTTACTCTAAGCGGTAACATGATAAAGTATTGCTCCAAGAACAATATCCGCATTCTTCGGAATGGAGAACCTCTACATCTTGAATAGGAATTTTAGATAGCCGGCGGGATATCTTTGTTATTCAAGAAAGAATAATCTTTCTATGAGATATATTGACGACATATGCGCAGTTATATATCGGTATTTTCGAAATTATTTTGCTTGTTTATAATCAGAGAGTTGCGAATTTACTTTTTTGTATATCGTTGATAATCAAATA # Right flank : TCAGATTGATAAGTAAGAAAGTTGAGATAAAAGGGTTCAGAAGAATGATTGAAAGGGGATAAAAGATGGGGTGAACGTGTAAAGAGAGGGAGATGAGGGCTTGAATGGGAGAAAGCAAGGCTTGAATGGTACAGATCGCGGTTTGATTTTTAGAAATCAAGCCGCGATTTCTTTTTCTAAATCTGTTCAATCAAAGATTTAGACGTGATCAGAGAAAGTTTTTAAGCCGTATATTGTGTTTCGGGAAAGGGGAGAGAGGGTGTCGGAGGGCGCTCTGTCGGTTAGGGGATGAGGCATGGGAGACAGGGAGAGCATTTTGATTTTTGCTTCCGGAAGTCGGTTTTTAGTCGTATTTTTGTAGTAGAATCAAAAAAACAGAGAGAAAGATGCAAAAACCATCCATACCCAAAGGAACAAGGGACTTTCTTCCTCACGAAATGGAGCGGAGAAACTATATATTCGAGACCATAAAGAGCGTGTTTCACAGCTTCGGTTTCCGT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATACATATTCAGTCAGTAAGACTATCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 506-3304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZX01000007.1 Porphyromonas canoris strain COT-108 OH1224 contig_7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 506 30 100.0 36 .............................. TGAAGTCTGCAGCCCGACGCAATGCCTCAGAGATGG 572 30 100.0 36 .............................. TCAAGAGGTATGATAGACTCAGACATCACCGCCGTT 638 30 100.0 37 .............................. CAAATATAAACACTATTTTTCAATCAGACAAATGGAC 705 30 100.0 34 .............................. GCTGCTGATTTTTGTCAAGGATATAGCGGTGTGG 769 30 100.0 35 .............................. ACATGCGGAAACCACAATCTATTTGAGATGCGATG 834 30 100.0 36 .............................. GCTAAGGTGCAAAACACTAATCAATTGAGCATCGAG 900 30 100.0 36 .............................. GTTGTTTCGAGGATGCGATTAGTACGCGTCGGAGAC 966 30 100.0 34 .............................. TTGACTTCAACCCGTCCGATCCCCTCAATAGCCT 1030 30 100.0 35 .............................. ATGCAAAAGATACGGTAACGAGGACAGCGGATGCT 1095 30 100.0 37 .............................. CGAATCATCAACGACTACGGCATGCAGAAGAAGCACG 1162 30 100.0 35 .............................. ACATCGAGAGCAACGACAGGACGGACTATTTGTCT 1227 30 100.0 36 .............................. ATCTTGTTGCGACTGTTTAGTTGATAAATCATTGTT 1293 30 100.0 36 .............................. ATATGATAGAAATTCCCAAGAAATTCCTCTACGAGA 1359 30 100.0 36 .............................. CACGTATTCAGACGGATCTATTTGAGATATATTAAA 1425 30 100.0 38 .............................. ATGTGAGTGTCTGGAGAGCTTTGAGGTATCACAATAAT 1493 30 100.0 36 .............................. AGCATATTATCACAACAAGATAAACAACTTGGAGAT 1559 30 100.0 37 .............................. ACTACGGATTAAACGATACACAAATAGCAGGCATTCT 1626 30 100.0 36 .............................. GGATTATAGCGAATAGAATCGCCAGGCATAACATCC 1692 30 100.0 36 .............................. AACATATACCACACTTGTTCATCTTGTGTGTCCTCT 1758 30 100.0 36 .............................. TGAATTTTTCGGGAGGAATAGGATGAGAAGAAGAAA 1824 30 100.0 36 .............................. ATCCTCGGTGGTGTGGGCGACAGGCGAGTACGAGAG 1890 30 100.0 37 .............................. CAGCACGGCGACAAGGACACTACACCCGCTATCGAGC 1957 30 100.0 37 .............................. CAGAGTCAGTATCTGTCGTAGTGAGTAATGCCTCTAA 2024 30 100.0 37 .............................. AGAACTCTACTACAAATTCGGAGGCGGAGAGGGCGAC 2091 30 100.0 35 .............................. CTTCGAGAGTGTCGTACGCTACCTGCGTCTGTTGT 2156 30 100.0 36 .............................. CAGCCTTGATGATTTTAGCTCTTTCTTCGAGATTGT 2222 30 100.0 36 .............................. CGAGCAAGGAGTGATAACGCAGGAGACTGACGTTGC 2288 30 100.0 36 .............................. CACTATTGCGTAACGGTATAGAGACTCTGTTAAAGC 2354 30 100.0 36 .............................. AGCATCCTTTATTTTGAAAGGTTTTAGACACATTTT 2420 30 100.0 34 .............................. ATAATATACCTCAAGGTTGGAGCCTGATTAGGGA 2484 30 100.0 36 .............................. ACGATGCGGATTTGCCACCAACGTTACCGAGAGGAT 2550 30 100.0 36 .............................. AAACTATTCGGTATTCGACCATCGAATTGTGATATT 2616 30 100.0 37 .............................. CTGGGGGGCGTCGGTCGCCTCCGCCATCGGCACGGCT 2683 30 100.0 36 .............................. AGCTGTATGGCTTGAAGGCAAAGGGGGAGATAACGA 2749 30 100.0 36 .............................. GTGCAGATAAGCACACATCCAAATGTGCTGCACATT 2815 30 100.0 35 .............................. GAGCGAATGCAACGGCAAGAGCAAGCTGGGGCAGT 2880 30 100.0 35 .............................. ATACCTAGGAAATCTTCAATAGCCATATTATAGGA 2945 30 100.0 35 .............................. TGAGACGATAGTACGCACATGCTGCTTGCTTCCCA 3010 30 100.0 38 .............................. CATCTGGTAAAACTATAAAAAAACAGATGCTGAAAGTC 3078 30 100.0 36 .............................. TTCGAAGCAGCGATAGATAATATTTATTCAAAAATA 3144 30 100.0 35 .............................. ATGTTATCCAGAAGGAGTCTACCATTTCTTCTAAA 3209 30 100.0 36 .............................. GGTTGCTGACTCTTCGTGTGAATAGTTATCCTTTCA 3275 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 100.0 36 CTATCAATCGTACCTTAGTGGAATTAAAAC # Left flank : CTCTTAAGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCGACGGTTCGAATCCGTCATTCTCCACAAAAAAGAAGAGAGTCGTAATGTTATCTGGCATTGCGACTCTCTTTTTATACCCTCTTTCTACTCCTAAACTCATTAAGTTTCTGTTTAAGCATTTAATTTTATTATCTTAGGAAAGGATATTCAAATACGAGCCCACATACCCAATTCTTGATTCCCTTTATTAAGTGTCTGAAAATAAATCAGATAGTTGGAATAAAACTCTCCCTTTGTCGTCTGTCTCTACATTTGACCTGCATTTATTTCCCAAATTCTCTCAGAAATAATTCCATAAAATCTGATTATCAAATTATTAGAGTTGTTGTCGAACTCCCACTCTTTTTCTATTATTATAGAACGACAACTTTTCCCTAAAATTTATCCCCTCTTTCTCTTCTCTATCCCTTTGTTTGCATCACTTTTTTCATGTAATTTTACGG # Right flank : CGCTCTACTAAAAATAGAGCGTTATCATAATATACGACTATCAATCGTACCTTAGTATCTTCGCTGTTGTTTGTTAGCGTATTTGCTTTGATTGTTTCAAGCTTCTCTTCTACTCGACAAACTAATGTATTCTCTTCATCTTCTACTTCGACATAGAAGATATTGTAGTCTTGTATCTTGTTCAAAAAGCGTTCATATTCTTCTCTTTGCTCTTCTGTTAAACTACTGTCGAAATCTTGCTCAAAATCTTCATCAAAAAGAAATCTGAAGAAATTATGACCTGATTGAGCTTCGAGTTCTATATACTCTCTGAAAGAAATCTCATGAGTGTTTACTTGTTGTTCGTAGCTCTCTCTTAGAACTTCAATCTTGCTGCTGTTAATAGTTTTCATTGCTGTTTTTAGGTTTTACTTTGTGTTTTATCTTTATACTGCAAACATACACCTATTTTCTGAACTACACAATAGGAAATTCAGAAAATATATTGATTTAACTTTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCAATCGTACCTTAGTGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 42295-41340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZX01000007.1 Porphyromonas canoris strain COT-108 OH1224 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 42294 30 93.3 36 ..........T..C................ AGCAAGAAGAACTTTTGCAACGAACGCATATCTCGC 42228 30 96.7 36 ...........T.................. TAACATTTCCTCAAAGTTGTTCTGTAAAAGACGATA 42162 30 100.0 36 .............................. GGTCAGCGTTTTCGTCGAAAGATACGGCACTCAATC 42096 30 100.0 36 .............................. TCCGCCTTATGTTAACAGCGATTGCGGACACTACGA 42030 30 100.0 35 .............................. AGCCCTATTTCGGTCAACGTGATGCAGCTGATCGC 41965 30 100.0 36 .............................. AAAGCGTCCGAATACGCTCTCTATCGTCTTCGCCTG 41899 30 100.0 36 .............................. CGTCTTTAAGATAAGAGATGTCCACGAAGTGGTTTC 41833 30 100.0 36 .............................. CTATGCCGATCGATGTGCCGGCTCACATTCAAGTTG 41767 30 100.0 37 .............................. TAGTGAAACTTCTGTCTGCAATGTGCTTTGTTGAGAA 41700 30 100.0 38 .............................. CATCTTGACGCCGTAGAAGAGATTGGAGCAAATGCGTT 41632 30 100.0 36 .............................. AACCGTGAAAGTAGAACCAAGCCGAATAATATCATT 41566 30 100.0 35 .............................. ATTCATATACAGAAAACATGATGGTTACAAACTTC 41501 30 100.0 37 .............................. AGAGAATTTCGATGCTTGACGCAAGATGCAAAGAGCA 41434 30 86.7 35 ...........C..T......A.....A.. TAAAAATAATTATAAATCAAATGGTAAGCAAGGAA 41369 30 86.7 0 ...........G....A..G.........C | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 97.6 36 GTTTTAATTCCACTAAGGTACGATTGATAG # Left flank : CCCAGTGCTTACCGGTCGGTTTATAGCCGGTCCACTTGACATCGCTGCCATCCGCATCTATCGCCAGGCTCTTTACCGAGGAAGCCATATCCGACATAGCCTCCACAGGCACCGCTTCGGAAGTCCTGCTCGCCTGCCTGTTTCCGGAGCAGGAAAGCAATCCGAACAGAAAGATTGCCACAAAAAATATCTGTCTTAACTTCATACTATTCCCATTTTTAGAGATACCGATACCACTGTCAAATATGGTCATACAAAAGTACAAAAATACTCTCTTCACAGCTCTAAAAGATTAAACATCTTGATGTTGGGATGAAAACACCGATAAAAGCAGCCTTGCAAACACGATCAAAGGGATTCAAGGAAAAATTTGGAGCTGTTGAGGGTATAGTCAAGAATAATTAAAGCAATCATACAGACATTACCCTCTCTCCATTTCAATACTGTATGGTACAATTGATATTGTCATGGAGCTTTGCAAGTTTACAGATTTAGATTGA # Right flank : TCTCAAATTTACGAGAAAAGCAGATAAAAACAGAAAGCAAAAGATATCTAAAAGGCTATAATCCAGAATAAAAGGCTGAGCAAATCCGATAACAGAAAACCATAATAGCATTCGGAGATTTATTATTCTATGACAATCAACACCTGCAATCCCTTTCCAAAAACTACAATAATAGAGTAAAAGAAGAGCAGAAACAGACATTGAGCCGTGTCATAAGAAGATATCCACAGAGGCTTTCTCTTTTCCTATTATCTCTTTTTCCAACCAGCGGTGCTGTCGGGAGGAAAAGATGATAACACTGTCCTCCTCTTCGTCCATTATATCAGAGGCTTCCATTTTGAGTTCGAGAAGCTTTACTTCAGTGATTTCTCCCTCAAATACGGAGTTCTGAATCCAGTTGAGATATTTCCGACACAGCTTCAGCATCTTTGCCACTCGCTTTTCTCCCACATCATATACCAAGATCACATACATCACCAGTACATCTTAAATGGTTCGTA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCACTAAGGTACGATTGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 355617-355013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZX01000012.1 Porphyromonas canoris strain COT-108 OH1224 contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 355616 34 94.1 29 ..G........T...................... CGGCTTTGACACTGTTGTACTGCGACTCT 355553 34 100.0 29 .................................. CTGCTTTGACTTATTTGGACTGCGAAAAG 355490 34 100.0 29 .................................. AGGCTTTGACACGGTTGTACTGCGGCTCT 355427 34 100.0 29 .................................. AGGCTTTGACAGTGTTGTGGTGCTCCTAT 355364 34 97.1 29 ................................T. CCGATTTGAAAGAGTTGCTCTGCTCCTCT 355301 34 97.1 29 ................................T. CCGATTTGAAAAAGTTGTACTGCTCCTCT 355238 34 100.0 32 .................................. AGGCTTTGACACGGTTGTTCTGCGACTCTAAC 355172 34 97.1 29 T................................. CCGCTTTGACAGAGTTGTCCTGCCACTCT 355109 34 97.1 29 ..................A............... CTGCTTTGACAGATTTGTTCTGCCACTCA 355046 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================ ================== 10 34 98.3 29 AACTCCCTCACCTCGCTGGATGTGAGCAAGAACA # Left flank : AGAACACGGCTTTGACACGATTCTCCTGCGAGAATAACCCGAATCTTAGCTCCTTGAAGATCTCGAGCAGCATAAATGACGCGTTGTGGGTCAACCGCTGTCAGCTGAGCGCGGAGACACTGAACGAGATATTCACTACGCTTCCCGATGTGAAAGGGCAGAGCATCGGTCGGAAGAAGATCTGGATAGCAGACAATCCGGGTACGGATGCGTGCAACAAGAAGATAGCCACGGACAAAGGCTGGAAATTGGATGTCGGAGATACTCCTCCTGCCGGCAACAGCATGACGATGACGACAAAGAAAGCCGTGGGCAAGAAGATAAAGCTTAAGATCAATGCCGAGCCGGAAGACCAAGCGGATGTCTGGATAGACCTGAACAACAACAAGGTCAAAGATGCAGGCGAGAGCGTAACCGTATTTGGCTCCTATCAAGCGTACACACTCGGCTCGCAGACCATTACGGTGCATGGAAAGGTAACCGAGTTGTACTGCGGCTCT # Right flank : CGGCTTTGACACGGTTCGCCTGCTATAATAACCCGAATCTGAGCTCCTTGAAGATCTCAAGCAGCATAAATGATGCGTTGTGGGTCAAACACTGTAAGCTGAGCACGAAGACGCTGAACGAGATATTCCGCACACTTCCCGATGTAAAAGGGCTGACCGAAGGCGAGAAGAAGATCTGGATAGCAGGCAATCCGGGTACGGCAGCGTGCAACAAGAAGATAGCCGAAGACAAAGGGTGGACGGTAAAAACTGATTAAGATTGAGGGGAATTTCCCTCACCCCGAAGTGGCGGGGCGTGAAATATTGTAGACAAATTCGGGCAGTGCCGGTGCGATAAGTGCCGGCACTGCTTTTTTTTGTGCCGAGACGGAAAACCGGGATCGGGAAAAGAGAAAAGGTCGGTTTCGGAGAGCATGAAAATTTCGTACGTACAAAAAAATATTTTCGTAGGTAAGAAAATAAATTTCCGTAGGTAAGAAAAAATTTTTCCGTAGGTAAGA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTCCCTCACCTCGCTGGATGTGAGCAAGAACA # Alternate repeat : AACTCCCTCACCTCGCTGGATGTGAGCAAGAATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //