Array 1 51064-47984 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJW02000014.1 Pectobacterium aquaticum strain A35-S23-M15 Pectobacterium_aquaticum_A35-S23-M15_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51063 29 100.0 32 ............................. AACCAGTGGTGTTATTAAGATTTGGTTCACCA 51002 29 100.0 32 ............................. TACCTCAAGCGGAACAGTTACAACACAGTCTA 50941 29 100.0 32 ............................. CCTGGCGAGACTGTAGTTACGTCCGGTTTTGA 50880 29 100.0 33 ............................. CCCTGCGATTGATGCTTCGATTCCATCATCAAC 50818 29 100.0 32 ............................. GCATATTCACGCGACGGGCTAGGCATTACGAG 50757 29 100.0 32 ............................. ACATAAACGTTCACATCCCGAGCTTTCGTTGA 50696 29 100.0 32 ............................. GTTGCTGGCGCTGCCGCAGGTGGTGCTATTGC 50635 29 100.0 32 ............................. CGTCGCAGGGTATACAAAACCCTCCTGTCCTG 50574 29 100.0 32 ............................. CGGTGACCGGTCAGTTTAATTTCGCGTCATCT 50513 29 100.0 32 ............................. AATTTTTAGAATTAAATCCTGATAGCGCTAAG 50452 29 100.0 32 ............................. CATGGGAGTACGTACCACCATTGAGGAAATGG 50391 29 100.0 32 ............................. AAAATTGCGAACGTTTCACGCGCTCTATCATT 50330 29 100.0 32 ............................. AGCGTGACGCGATTTTAAGCGCGCTGGATTAA 50269 29 100.0 32 ............................. GATGGATAGAAAGGCATCGGTTAATGTCATCG 50208 29 100.0 32 ............................. TTGGAGAGCGTTTTATTGAAGACACACTAGAA 50147 29 96.6 32 ............................A GTTGGCGCGCTATAGATAGGACGCGGAGAAAC 50086 29 100.0 32 ............................. TTAATGCTGGTTGAATTATTCAGAGTGCTCAT 50025 29 100.0 32 ............................. GATCGACCACGCACGTACTCCAGAGGAACGAA 49964 29 100.0 32 ............................. ATGAACTGGCGGGCCAACTGGTCAACACCACC 49903 29 100.0 32 ............................. GTTACTTCTTTGTCAAACTTTAATTTACGCCC 49842 29 100.0 32 ............................. AAGATCTCCTCGATCGACAAGCGCTCTGTGTC 49781 29 100.0 33 ............................. TGCCGTACCAGTCGCTCAACTTGTCGTGCTCTT 49719 29 100.0 32 ............................. GCATGATCGCCGTGCTCAGCTGGGTGATGTCT 49658 29 100.0 32 ............................. GTAATTGCTTCCTCTACCGCCATAGAGGCTAT 49597 29 100.0 32 ............................. TTAATCACCCACGGCTTTAAGATGAATAACCA 49536 29 100.0 32 ............................. CGTAACAATAATAATTTTTGGCATAGTCTTCC 49475 29 100.0 32 ............................. ATGCTTATGCTCACAAGCTTGAGTTCATTGAT 49414 29 100.0 32 ............................. TAGTGTCTGCACATTCCGCTATTGAATGATGG 49353 29 100.0 32 ............................. GGAAATTGATGCTATCTATTATTGAGGAGTTC 49292 29 100.0 32 ............................. AATACAATGCTTGGGTTAATATGTTGGAAAGA 49231 29 100.0 32 ............................. GAGGGTTGGGACATACTCGATACCATGCCAAT 49170 29 96.6 32 ............................A TCAAAAGACACCGCAGAGTCATTGACGGTGAC 49109 29 100.0 32 ............................. GGTGAAGAGGATGCGCAAATCGGGTCGTCTGG 49048 29 100.0 32 ............................. GATTTCGTCGGGACAGAGGCCGATAAAATCGC 48987 29 100.0 32 ............................. GCACAGGTAGCGCAGCAGATTCAGACGCTGTC 48926 29 100.0 32 ............................. CAATCCTTACGTCAAACTGAGTGAGCAGGCTC 48865 29 100.0 32 ............................. TTGACAGTGAAGAAGCACAGTTTGACGTGCGT 48804 29 100.0 32 ............................. CAGGCGTGTCCGCTTCTCCTCTTCCTTGCGTT 48743 29 100.0 31 ............................. GACTAAATGAGGCTGCTGATAAGGCATACAA 48683 29 100.0 32 ............................. CAGTTGGCCTTCATCATCAGGATCGCCGGCAT 48622 29 100.0 33 ............................. CTGAACAAACATGGCAACCTGACTCGTAACAAG 48560 29 100.0 32 ............................. AATGATTCGGCACGTTATACGCCGGAAACCAC 48499 29 100.0 32 ............................. GCAGGGTTGACGAAGGAAATCCGTGACCGACT 48438 29 100.0 32 ............................. GCTCGTTTTATTGAGCAGGTTCGCAAAGGTAC 48377 29 100.0 32 ............................. CCCTCGATATGGCGGAAACCGATGTCGTGTTC 48316 29 100.0 32 ............................. TCCGACATTCGGAAAATTGAATCGGAACGATC 48255 29 100.0 32 ............................. CGTTCGTGGAACTTCTTTCAGGAACAATACAA 48194 29 100.0 32 ............................. TTATCAATGGCGTTGATAAAATGGATGATGTT 48133 29 96.6 31 ............................T ACCCCCCTGAGCGATACCGGGCGTGTAGCCC 48073 29 100.0 32 ............................. GGGGGACAGTAGCGACGCAGCGATTGTGGTAA 48012 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTCCCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTTCGCGCAGGCGTGTATGTCGGCGATACCTCACAGCGAGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTCATGGCGTGGGCAACGAATACGGAATCCGGTTTTGAGTTCCAAACTTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : AGTAGTAGAGATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCCGTTTACGGCATAATGTTTCCAATTTGGAAACAACAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGTACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTGGATAGGATGAAATACCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAATATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTTGGAGGCAGCACCTCTCGTAAGGATTATGAGGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 216362-215493 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJW02000037.1 Pectobacterium aquaticum strain A35-S23-M15 Pectobacterium_aquaticum_A35-S23-M15_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 216361 28 100.0 32 ............................ GTCACCTATCGTGTTCTGGTTCGAAAAATATC 216301 28 100.0 32 ............................ CGTACCAACCACAAGAAGCAGTCGAACAACCT 216241 28 100.0 32 ............................ CGCCAGACTGGAGCGGTCACAAGTTCGAGAAA 216181 28 100.0 32 ............................ TTATCTGTGCAACAATTTTTTCATTGCAAATA 216121 28 100.0 32 ............................ ACAGCGGGAACTGGTTGGCAGCGCATGAATAG 216061 28 100.0 32 ............................ AGAAGGAAAGGGATAAAATTGAACTAACAAAG 216001 28 100.0 33 ............................ CCATGATCCCAAATTATGTTGCCGCCCAGGTAC 215940 28 100.0 32 ............................ TTGTCTCTTGTTAATCGTAATTTTGTCGTATC 215880 28 100.0 32 ............................ ATCCGGTGAAGTTAATGCCGCCAGTGCTGGTA 215820 28 100.0 32 ............................ TGCAATTGCGCATCCTTATTTGGTGCGCGGTA 215760 28 100.0 32 ............................ TGGCGCAGCTTTTGCGTTGCTGAATCAAGCAA 215700 28 100.0 32 ............................ AAGCAGCACACGGCGCGGGTATGACACTGAAG 215640 28 100.0 32 ............................ TGCTGGAAATGTCAGACGAACGCGAACGGCAG 215580 28 100.0 32 ............................ AAAAATATTAAGCTGAACAAACACGGCAACCT 215520 28 75.0 0 .............T........CGCTTT | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGACTGCCAATTGGGTTTGACCGGACGCAACATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTAACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCCACTTATCGTTTATTATTGCTGGCTACACCATAGGCTAAGTATAGATATTAATCACTCCACTGCATATTCATAGCATATGCAGATACCTAATATAGGCCTATCGACGATAAATAAAATCTTTGTCATACGTTCATGACCCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTTGATTACCTGTCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATGAGTCCACTACCGTAAAATACGAACA # Right flank : TTATCGGGATACGTCACTGGCGCGACGCATTTCGTGGCGTTATTCCCCATTGAGCGTGACAACCAGTGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAACCCGACTTTTATCTGGCGCAATGCGACAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 225826-228254 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJW02000037.1 Pectobacterium aquaticum strain A35-S23-M15 Pectobacterium_aquaticum_A35-S23-M15_contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 225826 28 100.0 32 ............................ TCAGCCGCCCCCAGTACCGCCGCCTAACCTTT 225886 28 100.0 32 ............................ TTTGCGGCCTTCAATCATTGATTGCATAGATA 225946 28 100.0 32 ............................ ACGAGAATCGCATACGAACAGCAGATAGCTGG 226006 28 100.0 32 ............................ ACTGCCGCCTGAGGTGGTGAAGTACATCAGGC 226066 28 100.0 32 ............................ CAAGGCGCGTGGGTAAGGCTGGAAGATAAAGA 226126 28 100.0 32 ............................ TCTTTGATGTATGTACAGTATGCGTCACTTGG 226186 28 100.0 32 ............................ TGCGCATGCCCGCATCAGAAGAGAAGTCAGGC 226246 28 100.0 32 ............................ TTCTGTTAGAATACGAGATTCCAATTCATCAA 226306 28 100.0 32 ............................ AACTCAGCAACAACATCCACTTGACCTTCTGG 226366 28 100.0 32 ............................ TGAGCGATTTGTTCCGTCAGTTCATCTTCCAA 226426 28 100.0 32 ............................ GTATCGACAAACAAGTTATCGAAGCACGTTCT 226486 28 100.0 32 ............................ TTCAAGAGAAGATGACCATAAATCGTAAAAAT 226546 28 100.0 32 ............................ GATGTATATCGTCGTTGGTTGTATTGCCGCGT 226606 28 100.0 32 ............................ AAACCACAGTGTGTACCCGTCATCGACCAGTT 226666 28 100.0 32 ............................ GCTGTCAGCATTTCACTCAAGTAACGGTTGGC 226726 28 100.0 32 ............................ TGGCGCGGTCAGCCAGTCATCGTCGTTAACAA 226786 28 100.0 32 ............................ AGCAGCTTTACGCCGCTTGTATTCCGCGTAGG 226846 28 100.0 32 ............................ ACATCCGATTGATATGGTGATGCAGTCGGCGC 226906 28 100.0 32 ............................ GTGATTGCGTCAGTGGTTACCGGCATTCCGGC 226966 28 100.0 32 ............................ TCACCAGATAACGATTGACGTATATGAACAAT 227026 28 100.0 32 ............................ AGACAGTAGACGGTAACGTTACTGAATTTGTC 227086 28 100.0 32 ............................ TATAGAACCAACAACAATAAGACCCTTTGTTG 227146 28 100.0 32 ............................ AATCAAGACCAATACCTACCCAGTCGCTTAAC 227206 28 100.0 33 ............................ ACTAAAAAATGGAGTAGCGAAACTGGATTTGCT 227267 28 100.0 32 ............................ GAAATAATTCCTATAGGGACTCATGCAACCAC 227327 28 100.0 32 ............................ CGGGTGTTGAGAATGAAATTACCGTTAGCACA 227387 28 100.0 32 ............................ TGCGAAAGAAGTGATCACAAGGACTGTGCAGG 227447 28 100.0 32 ............................ AGGTTCTGGATTGATGAATTACCCATTCAGCA 227507 28 100.0 32 ............................ TATCTGTGTTTTTGGATGACCTTGTTCTTTGG 227567 28 100.0 32 ............................ ATGTGTGCTAACCCAAATGGTAGCTTTCCTGT 227627 28 100.0 32 ............................ TTTAACAAAGGATTCATCAAGAGGAACGTAAA 227687 28 100.0 32 ............................ ATTACAGGATGACGATAGCGGAGAGCAGCCAT 227747 28 100.0 32 ............................ ACCAGCGGATAATCCGCCTGCTGAAAAAATTG 227807 28 100.0 32 ............................ TCCATTTTACGGGGGTCACAATGCAATCATGG 227867 28 100.0 32 ............................ ACAGAAGGGTGAAATGTAGTAGGTGTCATATT 227927 28 100.0 32 ............................ ATCCCATGCTTGACGTGTTGCCGCCGGCCCGC 227987 28 96.4 32 .........T.................. CACATCATCGGCAGTGGGTTTAAATTGAGTTG 228047 28 100.0 32 ............................ CAGGCGATGAGCAGCTTCTTGTTACTGAAGAT 228107 28 100.0 32 ............................ AGCAAACTACACAGAACCAGCAGACTATGCGA 228167 28 100.0 32 ............................ GATCGGCGTGGCAATGATCGACAGGTTATTGC 228227 27 92.9 0 ..........-...C............. | T [228240] ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGATTTCCCTCTTCCGTAACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAACGGTGACGCCAGCGGAATAAATCGCAGGCTAACTATTTGATAAAGAAAAATATAATCGTCAAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCCATTTCACAGGTTTAATAATCAATGAGTTACGACTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTTCT # Right flank : AGTGGTAATGGCTTAAAAGCGTTATTTTCATAAGGTATTCTCTTTTGAGGTCACGCATTTATGCCAGCCACGATCAACGTTGCCTGCCGACATTGCCAGCAAACAGAACCCGTCCGTAAGTATGGTATAGGAAAGGCAGGATTTCCCCGATACTACTGTCAACAATATGGTTTTTCACCACCGATGATTGGGGGCGTTACGCACGAGAAACCGAGTCAGAAAAACACCTGACAGGTAAGCTATTCACGCAGAGAATTGAGCGGCATAACCTTCATTTACGAATTCATATTAAACGTCTGGCGAGGAAAACAACCTGCTTTTCACGCTCATTTGAAATACATGAAAAGTCATCGGTACTTATATTGAAAAACACCATTACAACGCATTTGCGTCATGACTCGTTTATTTCTCGCCAGTTCAGCCAGATTCGCATATCAAATTCCAACTGGTGATAATCAGGGTCCATATGGCAGCAGAGTTGGTAGAAAGCCTTGTTGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //