Array 1 3066209-3064244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039860.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3066208 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3066147 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3066086 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3066025 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3065964 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3065903 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3065842 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3065780 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3065719 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3065658 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3065597 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3065536 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3065475 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3065414 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3065353 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3065292 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3065231 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3065170 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3065109 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3065048 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3064987 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3064925 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3064822 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3064761 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3064700 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3064639 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3064578 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3064517 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3064456 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3064395 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3064334 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3064273 29 96.6 0 A............................ | A [3064246] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3083833-3082340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039860.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3083832 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3083771 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3083710 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3083649 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3083588 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3083527 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3083466 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3083405 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3083344 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3083283 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3083222 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3083161 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3083100 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3083039 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3082978 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3082917 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3082855 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3082794 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3082733 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3082672 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3082611 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3082550 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3082489 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3082428 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3082367 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //