Array 1 1743874-1745491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024736.1 Akkermansia muciniphila strain EB-AMDK-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1743874 36 100.0 30 .................................... ATAGCTGGCAAGCATTAAATGAAAATCCGC 1743940 36 100.0 30 .................................... GCGAAGCGGGGGAGTATTGCGCACAATGTC 1744006 36 100.0 30 .................................... CATGCGCCGCCCTGCCTCGTAGGTCTCGCA 1744072 36 100.0 30 .................................... GCTCGTCCCGCAACTTCCCTAGCGGTACAG 1744138 36 100.0 30 .................................... GGAGGACCCTGACCCTAAGGAGATTCTGTT 1744204 36 100.0 30 .................................... CCGGGGAATCCGGGGGTGCCAAGCCTGTTT 1744270 36 100.0 29 .................................... TACATTAGAGATTTGCGCTGGACAAAAGA 1744335 36 100.0 30 .................................... GGGGGCGTCATCGATTGTGGTGGTGATTTG 1744401 36 100.0 30 .................................... CCGCTACTACTTAACCCCGGCGGAATGCGA 1744467 36 100.0 30 .................................... AGGGGCGTCATTGTTAGTGATTTGATTGTT 1744533 36 100.0 30 .................................... TGTGGTCTATCCTCCCTACTGGTGAAATTG 1744599 36 100.0 30 .................................... TCGTGAGAGCCGCCGCCGCTAAGTTAAGAG 1744665 36 100.0 30 .................................... GGTCATCGTAAATGCTCATAATCTTATGTC 1744731 36 100.0 30 .................................... AAACACATGCCAGAGGATGAAAGGGAATTG 1744797 36 100.0 30 .................................... TCGTAAGAGCCGCCGCCGCTAAGTTAAGAG 1744863 36 100.0 30 .................................... CGAACCCGGCAGACCTGCTTTCCCGTATTG 1744929 36 100.0 30 .................................... CAACCATTATTTGTCAACCATATTTCACGC 1744995 36 100.0 30 .................................... TTGATCCGCGGCCTAATCCAAAAGTAAATT 1745061 36 100.0 29 .................................... CATAGACGTTTCGGGAAAAGTCCTATATA 1745126 36 100.0 30 .................................... GTATCCTTAAACTCTTCAATGGTCTTCGGG 1745192 36 100.0 30 .................................... CCAGCTATTGGTAGAGTGGGGCATTGACAT 1745258 36 100.0 30 .................................... GCATTTTGCCATTTCCCGCTGATGACTTTT 1745324 36 100.0 30 .................................... TATTTGCCGAAACGGTATCTGACGCCCGCC 1745390 36 100.0 30 .................................... AAGGGGTTGTAGGTCAACTGGTCCACAATG 1745456 36 94.4 0 .............................A.....T | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.8 30 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Left flank : TCTGTCATGTACCGGGATAAACAGCTGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGACAATCCGGACCGTATGAACCATGGCTTATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAATATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGCGTTACTCAGGAAAGAATGGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTGCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCT # Right flank : TAAATACGCCTCCGGTTTGATGACGCAAGGTGGATGTCCGTCTTTGGCCGCGCAATTCCAGACGGATTTTTGTCAGTCTTTCTTTAACGGAGCGGGAGGAATGAAGCTGTACGTCCAGAACATGGCGCCGGTTGCGGAGGTGATTCCGTCCATGTTAAGATAACGGGCCAAAAGCAGGGAGGGGGAGGAGTGCCCCATCTCCTTCTGAAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGATAGGAGGCGTAGGTATGCCTCAGCACGTCCTGCACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCCTCCATTTCTTTTCCCAGTTGGGCGGGCAAACGGGACGGGAGGGGGAACCGGCGGAAGACGTCCGGCTGAGGATGGCGCCCAGCACGGGAAGGATGGAAACGTGGCGGCTCCCGCCTGTTTTGGTATGGCAGGGCGCCAGTGAAACCAGGCCGGATTTCAGGTTGATGTTCTTCCAGGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 2171853-2171303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024736.1 Akkermansia muciniphila strain EB-AMDK-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2171852 31 100.0 34 ............................... TTTTTATTGCGTTGTAACTCGCTGGTGCCCTGAC 2171787 31 100.0 34 ............................... GGGCCTAGTGCGCATAATCGAAAACCCGGAAACG 2171722 31 100.0 33 ............................... TCGCAGGTTGTCAAATCAGGCCCCGGGGGACGG 2171658 31 100.0 34 ............................... GTTGATGAGTAACTGCCAAGCTTGGTTCATCAGG 2171593 31 100.0 34 ............................... TGTATGGGGCCTCACTGTTTCGCACAATCGTTTT 2171528 31 100.0 34 ............................... GTCAGGCAAGCGAGAACGTCATAAGCGGTTGGCT 2171463 31 100.0 34 ............................... CCATGATAGAGGAACTGCAACCTAGCGGCATCCT 2171398 31 100.0 34 ............................... ACTACTTGCCGAACTGGTCAATCAATCGCCTTGA 2171333 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 9 31 100.0 34 GTCGCACCCTCACGGGCGCGTGAATTGAAGT # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGCGCGTGAATTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //