Array 1 147214-146889 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795071.1 Rothia sp. HMSC071B01 Scaffold123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 147213 36 88.9 35 NNNN................................ CGTCTTTTCCACGGGCGTCTACGGTGCGGAACGCG 147142 36 100.0 38 .................................... AAGTGCGATTGCCAGGTGGTGCCCGGGTTTGAGGGCAA 147068 36 100.0 35 .................................... ACTTCTGTTCGTCGTGGCGATGTGCTTGTTGATGA 146997 36 100.0 37 .................................... CTCATAGCACCCGCGCGGGGCGCGTCAAGCACTTTAC 146924 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 95.6 36 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGCTCAGAGGGGCACCCGTACCACGCCAGGTAAACATCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGAACTCCAGCGATTATCAATCCCACCGGTACCCCCAAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGTCCTTGTTAAGCCGAGGCGTTCTAAGAGCAAGAAGAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGAGGGCCGGCGCAGGACGATTAATGCCCAAATTCAAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAGATTTCCCTTCCTTTTGGGAGGGACTTTCATTGAGGCAAGCAGCAGCCTGCGGACAAGATCTTGGTCGCCCAGGATTTCCCTTCCTTTTTGGAAGGGCTTTCATTGAGGCCCGCAAACCCGCAGGTTCTCAATTGTCGGGCCAATTTCCCTTCCTTCTGGGAAGGGCTTTCATTGAGGCGAGGCGTTCCGCTATTATTTCCCTGAGCGCAACGGCGAATTTTCTCTTCTTCTTGGAGGGGCTTTCATTGAGGCTCGATCGGGTTGCCGTTATCGTCCGTCAGCGGCGCGATTTCCCTTCCTTTTTTGGAAGGGGTTTCATTGAGGCGCGACTGTGCAT # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 147378-147633 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795071.1 Rothia sp. HMSC071B01 Scaffold123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 147378 36 100.0 38 .................................... TTCTTCTTGCTCTTAGAACGCCTCGGCTTAACAAGGAC 147452 36 100.0 38 .................................... CTTGGGGGTACCGGTGGGATTGATAATCGCTGGAGTTC 147526 36 100.0 36 .................................... GATGTTTACCTGGCGTGGTACGGGTGCCCCTCTGAG 147598 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 95.8 38 CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Left flank : NNNNNNNNNNNNNNNCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGTAAAGTGCTTGACGCGCCCCGCGCGGGTGCTATGAGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCATCAACAAGCACATCGCCACGACGAACAGAAGTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTGCCCTCAAACCCGGGCACCACCTGGCAATCGCACTTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCGCGTTCCGCACCGTAGACGCCCGTGGAAAAGACGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTTGAATTTGGGCATTAATCGTCCTGCGCCGGCCCT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCACCAGCACGCGGGCGGTGGATTCATCCAACACCTGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCTCTAGCGCGGTATTATGCGCCTCGACCAGAGCGTTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTGGTCCGTCCGGGTTCGGTAAGACAACCACGATTCTGGAGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCCTGCGCCCATTCCAGCCCGC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 3 148331-148148 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795071.1 Rothia sp. HMSC071B01 Scaffold123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 148330 37 100.0 35 ..................................... GGCAGGTGGTATGTAGATGATACACCTTCACGCAC 148258 37 100.0 37 ..................................... CCGTCGCTTTCATTTCATGCGCTTTGCCCTATCGTGA 148184 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 36 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGC # Left flank : TTTTGACAAGGTGTTTACTGAGGAGATGCTGGCTGGTGGTTATCAGAAGAAGTATTTCCGTGCGGTGTCTCGTTTGACTGCGTTGGCTCGTGAGGGCATGCTGGGTGAGGAGGCGGAGCGCTAGTTCCGCTGTTCGCCGGGGCCGAGCTTTGGCCGGCTCGGGTTTTGATGCGCTGTTCTTTCTAGTCCCGTGAGACTCGAAGCTCGCCCGATTTGCATGGTTAGCTTGGTTAGTCTGGTTTACCTGAACCGCGCCAACCCCTCTCATACGTGAGGACCCTCGCCGGGTCGCTTAGGAAGCACCCGGCGGGGGTCTTTGTGTGAGCGAGAACCTGGTACGTGACGGGAACATGGCGTGTCGCTCGCATGGTTTCTTCCCTTGCCAGGGAGTTATGCGGGGGTAGATGTGGTTGGAGTGTATAATTTTGCGTGTAGCCTCCGCGAGGTTCTCGCGAAGCACCCGTTTCTGCCGCATGGTTGCGGGCTATTTTCGGGTAGCT # Right flank : GCGCCGATTGGGGGCGCGGGCTGGAATGGGCGCAGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCTCCAGAATCGTGGTTGTCTTACCGAACCCGGACGGACCAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGAACGCTCTGGTCGAGGCGCATAATACCGCGCTAGAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCAGGTGTTGGATGAATCCACCGCCCGCGTGCTGGTGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //