Array 1 45824-42713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLE010000033.1 Bacteroides caecigallinarum strain An496 An496_contig-110_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 45823 47 100.0 30 ............................................... TTAAGTTGTGTGTTAAGGAGAGTGGCGGTT 45746 47 100.0 30 ............................................... AAGCTGTAACTGTTGCATAATGTTTGCCAT 45669 47 100.0 29 ............................................... AAATGTATTTAATTTTTCTTTTATATTTT 45593 47 100.0 30 ............................................... AAATAAATTGTTATAATGCTCCATTACAGC 45516 47 100.0 29 ............................................... AGCAGTAAAAGAATTAGGAGTTAGATATT 45440 47 100.0 30 ............................................... CTCCAAATGCCAAATTTACATTCGAAAGCG 45363 47 100.0 29 ............................................... TGTATTACCCAAAAAATTAAATCTTATGG 45287 47 100.0 30 ............................................... TATTTCTCATCTTCCGTATTGTAGTTCATT 45210 47 100.0 30 ............................................... AACGTACTAACAACACATGTAAGCTTCTTG 45133 47 100.0 29 ............................................... TAATATCAGAAGATAAATATTATTCTTAT 45057 47 100.0 30 ............................................... AAACAGACTTTCGGCACGTTTGCCCCGTAA 44980 47 100.0 29 ............................................... AAGTGGTAATTTCTCTCTTTCTGGTTTTC 44904 47 100.0 30 ............................................... CAAGTTTCTTCAAAACTTCTAAGCATATGA 44827 47 100.0 30 ............................................... AACGATGGTAGCAATTTGGTTAACCTTTCT 44750 47 100.0 30 ............................................... CAGCCACACAAGTACCTATGACCTTGCCGA 44673 47 100.0 30 ............................................... GCCGTGCAATTAAGTTTACAGCTAAGGTTG 44596 47 100.0 30 ............................................... CATAATGTTTACGTAGTCTTTTTAAAAAAA 44519 47 100.0 30 ............................................... AAAAGCATGGTATTTTAGAGAGCGAATGAG 44442 47 100.0 30 ............................................... TATCTGGTCAATCTCGTTATCTTGGTGGTC 44365 47 100.0 29 ............................................... GAACCATCAATAGTTGTTTCGTTCACGAT 44289 47 100.0 30 ............................................... GGGGAAAAATGACCTCTTTTTTTGCCCCAA 44212 47 100.0 29 ............................................... TCGGCGAGGATAATTCAGAGGCAGGCTCG 44136 47 100.0 29 ............................................... AGCACGCATCCAGCACAACTACCATTGTC 44060 47 100.0 30 ............................................... TCACAAATAATGCATATATTGCAACAATAT 43983 47 100.0 29 ............................................... GTCAACGTATAAAATGAAAGCTCTAAATG 43907 47 100.0 29 ............................................... CATGTCTTACCACAGCTTGACTATACAAC 43831 47 100.0 29 ............................................... TGGTTATGCTCCACAGTATTATGATTGGA 43755 47 100.0 29 ............................................... ACACTGCAAATATACGCATATTATTTTAA 43679 47 100.0 29 ............................................... ATTGCTTCGGTTTTAACCGTTCATTTAAT 43603 47 100.0 30 ............................................... ATATTCTTGCAGGTGCTGTATTACTCGCCT 43526 47 100.0 30 ............................................... TATAGATAAAATATGATAATTAGACTTGTA 43449 47 100.0 30 ............................................... ACATACTTAATAAACATTTGCAGTCGCAAG 43372 47 100.0 29 ............................................... CAGCGGTGAATAAACGACACAATCCATAA 43296 47 100.0 29 ............................................... TAGTTATGTGGTTTTAAAGATTAATAAAT 43220 47 100.0 30 ............................................... GAAATTGAAAGATAGCATCCAGACAGAGGA 43143 47 100.0 29 ............................................... TAGCTATTGGTAAGTCAGTGAAGTCAGCT 43067 47 100.0 30 ............................................... ATACTTCGTACATGCGCCCTACTGCTCTGG 42990 47 100.0 30 ............................................... CCGTTAATTACTATTATGAAACATTCTTAT 42913 47 100.0 30 ............................................... TGGTTTGCAAGACAATAAAGAACAAATGGC 42836 47 97.9 30 ........................................C...... GCCTATACAAGATATACCAACTAAGCCTAT 42759 47 87.2 0 ....................A...........G...T....T.G..A | ========== ====== ====== ====== =============================================== ============================== ================== 41 47 99.6 30 GCTGTTCTTGTTAGCACAAAGATAATGATTTGAAAGCAATTCACAAC # Left flank : ACAAAGATAATGATTTGAAAGCAATTCACAACACACGTGATCCTGATACTTCAACCAATGT # Right flank : GAATAAAAGTGATGAAAACGTTATTAAAACGATGAGTATTGCAAAAAATATAGATATCGTGTCTTTATTGTGATGGGAAATGATTAATTTTGCATATAATAGGCACTATACCGGAAATAACGAACAGATTAAAGAATAGGCTTTATGTCGTACTCAAAAATTAAAGATATCACAACTAACCTTTGGAGTAAGTATAACGTTAGCTTCACTGCCAATGCGGATGTGAATATTATCGTTGGTATAAACGGTAGTGGTAAGACTACGTTGCTAAACGAAATATACAAATTAGCTCTTAAAAATCTCGGTGATAAAAAACAAATAGTATTTGTACCGTCTATAGATAATATAGCCATGCGCGATAAGCGTAAAGTGGCAAATGCATTGACACAGGATCTTGAATTTTACATGTTCGATATGAAAACTGGCCCGTCAATGATGTATTATCGCATGTCCATGATTGATGCTACACTGGAAAAGCAAACTGAGATGAAAGCACGTAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTCTTGTTAGCACAAAGATAATGATTTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 10605-11876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLE010000076.1 Bacteroides caecigallinarum strain An496 An496_contig-110_75, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 10605 47 100.0 30 ............................................... CTCCTAATGCAAAATTTACTTTTGAAAGTG 10682 47 100.0 29 ............................................... TAATGTATGTTGTTGTGCAACTTGTAAAA 10758 47 100.0 30 ............................................... TCCGATAAGCAGAACATTTATCAGAAACGG 10835 47 100.0 29 ............................................... CAGTTCTTATGTTATGTTCAGGCTTAACA 10911 47 100.0 29 ............................................... ACGTATAACATTTAATTGAAATAATTATG 10987 47 100.0 30 ............................................... CACTTGTCTGCTGCTTGCTGATAACCAACT 11064 47 100.0 29 ............................................... TACACTAACATTTAGTAATGAAGAGTTTC 11140 47 100.0 30 ............................................... GGGAGTGGACGAAAAGGTATTGAACAGGAT 11217 47 100.0 30 ............................................... CATGTGTGCTGTCGGCTCTCTGTGTGTTCT 11294 47 100.0 30 ............................................... AACGCACTTACAATTCATGTAAGCTTCTTG 11371 47 100.0 30 ............................................... TGTATATATGTAAAAGATTGCTAGACGGCT 11448 47 100.0 30 ............................................... GATTAAATGTAAATGTATCACCTGGACACA 11525 47 100.0 29 ............................................... CTTTTCTGACAAATGTCCTGCTTATGTTT 11601 47 100.0 30 ............................................... CTGGTTCAGGAAGTGGAGAAATTGATTTTA 11678 47 100.0 29 ............................................... TTGAGCTTAGTTTCCCAATCTTACCGACT 11754 47 100.0 29 ............................................... AATGATGGGACCGTAAATTTCTCATTATG 11830 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 100.0 30 GCTGTTCTTGTTAGCACAAAGATAATGATTTGAAAGCAATTCACAAC # Left flank : CCAATTATTCCAATTTAACGTATATGTAATATAAAACTTTTTTAGAGTTAATATTCTTTTATGGAACGATTTAGTGAATATAGGGTTATGTGGATACTCGTTTTTTTTGATTTGCCAACAGAAACAAAAAAAGAAAGAAAAGCAGCATCGGATTTTCGCAAACTTCTTCAGCGAGATGGGTTCACTATGTTTCAGTTTTCCATATATATACGTCATTGCGCAAGTAGTGAAAATGCAGATGTTCATATAAAAAGAGTTCAGTCATTTCTGCCTGATATGGGACAAGTAGGAATTCTTTGTATTACTGATAAACAATTTGCACAAATTAGGATTTTTTATGGAAAGAAAATTACAACTCCTAATGCTCCTGGACAACAGCTGGAATTATTTTAAAACAATATAACCAGCTTCTAGCGGGTTATATTGTTTTAAAGAACAGCATTTTTTTATTCCTAATAATGTTTCTAATAGGTTGAAACATAGGGTGTTGTGCGTATCCA # Right flank : ACACGTGATCCTGATACTTCAACCAATGTCGCTGTTCTTGTTAGCACAAAGATAATGATTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTCTTGTTAGCACAAAGATAATGATTTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 41755-41480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLE010000019.1 Bacteroides caecigallinarum strain An496 An496_contig-110_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 41754 45 80.9 30 AAATCA....A....--.............................. CGGATGCTTTGGAAGCAAAAATTCCTACGG 41679 47 100.0 30 ............................................... GCGAAGCCGAAGCCGATGAAGTTTTCGACG 41602 47 100.0 29 ............................................... ATAAATTCCAAGCAGTGTAACGACTGTTA 41526 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 95.2 30 GTTGTGATTTGCTTACTTTTTAGTATCTTTGGAGCATTGAAAACAAT # Left flank : ACGTATAGTACCTAAATCACCTACTCTTACTGTGTGTCCCTGCTGCAATTGCTGACGTGCGTGTCTTCCAAGTAATTCAAGAGCGGCTTCCATTTCTATGGGAGCGGTTGTTGTGTTTTCCGTAGCTGCACGTGTCATGGCTTTTACAGTCTGTGGAACTTCGCTGATAGGAATTGCATACCATTTCTTAGGTGCTGCCTTATCCTGCGGATTGATTTTCTTTACGAGCTTGTACTTGTACATACTGACCTCCTTTTTTATTAGTGGGGACTGTAATGGCAAAGTTACAATTTTATTTAAAACAACAAAGTTTTCTTGCATATTATTACATACGTTAGTCACAGATAATTACTAACGTATACAACGATTGATTACTAACGTATGCAATTACAGACTACATACGTTAGCAATTGTACCAATAATAAGTATATGCTTTTGTGATTATAGGAGACATCAGAAGTTTATACTCACGGAAGATAAATTATTTAGGTAAATCACAC # Right flank : AGAATTAGTATTATCTATTGTAAATCAGCAGCTTGTATTAAAGTATAGGAATTACAAATGAAGTTGTTTTCAATAGAAAATCCCGCCATACAGCGGGATTTTTCTTTTATAATAATAGAACATTCAATTCCTTTTATTAAAGAAAATAATCTTCCCTTCAAGAGTTATCTTAAAATCAATGTCTTCAAGAAGATAGTTTAATTCATTAATACTTTGTCTAATCTTTTCCGGAAGAACATTATCAAATGACTTTAAAATAATAGCTTTACCTCTACCTGTTTCATTTAAGGGTTTGGAACAGATATGTTTCTTTAAATTAACAATATTAGCACTTTCAAATCTTTCAATAACATATAGTCTTTCAGATAGCAACTTAATGTCTATTTGTTTTCTCAAAAGATTATCAAGGTCTTTATTATCTTTATAAAGAATTACTTGCTTTCCTGAACGCAAAATGGCATCCAAGTAATATCCATTATCAATAACTTCAGATATACCAT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTACTTTTTAGTATCTTTGGAGCATTGAAAACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA //