Array 1 3084438-3085746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029992.1 Salmonella enterica subsp. salamae serovar 56:z10:e,n,x strain SA20011914 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3084438 29 100.0 32 ............................. CCCGGTGCGCTGCGCTGGCTGCTGAGAACGCG 3084499 29 100.0 32 ............................. TATTCCCCTTCAGCAACTCTTTCCGATAGTTC 3084560 29 100.0 32 ............................. CCTGGAATACTAACCCCTGGGTGTGGGTGATT 3084621 29 100.0 32 ............................. GCATAAATTGACGTATTTAGCGTGCATTCCAG 3084682 29 100.0 32 ............................. TCTAGCGCTGCATCCGGTGACGCCGGTGTGTA 3084743 29 100.0 32 ............................. GTTTAGTGCTGCATCGCGTTCCTGATTCAGCA 3084804 29 100.0 32 ............................. AAATAACGGCACACCACCTTCCCACCCTTCCC 3084865 29 100.0 32 ............................. CCCTACGCGCTAATTATGCGGCTAATACAGGC 3084926 29 100.0 32 ............................. GTTCTTTGTTGCTGGAGGCTCGCCGTGGCTAA 3084987 29 100.0 32 ............................. CAGCAGACGAATATTTTAAACGCAATATTGCT 3085048 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGTTCTTTAAA 3085109 29 100.0 32 ............................. CGTAGCGTACGCGGATAACCCAGACTCCGGTT 3085170 29 100.0 32 ............................. CGGCTTGACCACATCAAACCGTTTATCGCCCT 3085231 29 100.0 32 ............................. AATTAAATCGCCAACGGTCTGGCGCCACGGCG 3085292 29 100.0 32 ............................. CCTTCACGAACCGCGTTAATTACGCGATCGAG 3085353 29 100.0 32 ............................. CCGGCGGCGCGTAAATTGTTGGCCGGCAATCC 3085414 29 100.0 32 ............................. CCATCAAAACATACTGTGAAGGGCCGGTTAAT 3085475 29 100.0 32 ............................. GATTGCTCGGGCGGTATATCCCTGCCGATGTA 3085536 29 100.0 32 ............................. TCTGACCGTTCGTAGCGTTGGCAGGCTTTGTT 3085597 29 100.0 32 ............................. CACCCTTGTGAAAAGCCAGCAGCCATGATGGA 3085658 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 3085719 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.2 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAATAGTTTATAAACAATGATATACATTTAGA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAATGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGACAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAGAACGCGTTGGCGATGGGGAGCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3101817-3103556 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029992.1 Salmonella enterica subsp. salamae serovar 56:z10:e,n,x strain SA20011914 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3101817 29 100.0 32 ............................. GTTTTTCTCTTGAGCCAGGATTCGCTTGCTTG 3101878 29 100.0 32 ............................. CTGCGCCCGATAGTTATCTCAATATGTTTCTG 3101939 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCAGTGTA 3102000 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTTCACGTC 3102061 29 100.0 32 ............................. GAGAACAAAAAAACCCAGGTGATTCTGTTGAT 3102122 29 100.0 32 ............................. GTACTGGAGAGGTAAATATTCCAGTTACAGAT 3102183 29 100.0 32 ............................. AATTATGAGTTCACCAAATCCTATATTTGGTC 3102244 29 100.0 32 ............................. CTGCTCGCAGTTATTGGCGTAATAGGCCGGGC 3102305 29 100.0 32 ............................. TCATACGGTGTTCTGATTCAGCAATAAAACTA 3102366 29 100.0 32 ............................. ACACTCTCGCGTAACCAAAATTCACTAATCCC 3102427 29 100.0 32 ............................. AGGAAACGGCGGGCGCTCTCAGCGAGGATGAA 3102488 29 96.6 32 ..A.......................... TGACAATAACCAGGACCGGGTGTGGATTTGCT 3102549 29 100.0 32 ............................. CACAGTGCCAATTGAAAACGCAACCTATATTA 3102610 29 100.0 32 ............................. CTGCTCGCAGTTATTGGCGTAATAGGCCGGGC 3102671 29 100.0 32 ............................. CAAAAAACATTCGCAAAAATAGCGGCGTGGCT 3102732 29 100.0 32 ............................. ACCGACCCCAAAAACTTCGCTAAGGCCGTTGA 3102793 29 96.6 32 ............T................ CTGGACTGATCAGGCTGGAAGTTGGTCAGGTA 3102854 29 96.6 32 ............T................ GCGGAAATAGACGCGCGCGGACCCAGTAACGC 3102915 29 96.6 33 ............T................ CCAGATTCACGATGACATAAAAAACGAGAGAGC 3102977 29 96.6 32 ............T................ CAGAAGTACGATTCTTCACAACAATATCGGCA 3103038 29 96.6 32 ............T................ CCATCCAGCAAATCCTTCCAGACCCAACCAAA 3103099 29 93.1 33 ............T....A........... CGCGATAGCGTCCGCTTTGCCTTTGTCGGTCGC 3103161 29 96.6 33 ............T................ GCCCACGCCTCGACGCGGCACATAAAATCGTGC 3103223 29 100.0 32 ............................. CGCGCGTTAAATGCTGGTGGGGTGTGGCTGCG 3103284 29 100.0 32 ............................. ACGCGTATGACACCGCCGACGACAGCTATCTG 3103345 29 100.0 32 ............................. CGTTGGTTTAGGTGTGCATTCAACTTAAAATT 3103406 29 100.0 32 ............................. CTACCGCTACCCAATGGGCGCATGAAAAACAT 3103467 29 100.0 32 ............................. GCGGCAGCGGATAAAGCGGCGCAACAGGCTAA 3103528 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTAGCCGCCGGAGAAATCGAACGCCCTCAACCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATATCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACAGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCAGGGGTTTATGTTGGCGATACATCGAAACGCATTCGAGAGATGATCTGGCAACAGATTACACAACTGGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATTTGGATGGACTTAGATTAGTCTCTTTTCTTCCCCTTTAGAATCAATGAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTAACGTTGGTAGTTTGTTGAGTGGTAAAAAAGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTTCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4227647-4227920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029992.1 Salmonella enterica subsp. salamae serovar 56:z10:e,n,x strain SA20011914 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4227647 29 100.0 33 ............................. GGATGTATTTAGTGATTTTATTACCCTGTCTGC 4227709 29 100.0 32 ............................. AGAGGGGAAAAAATCAGCGATGGCGAGCTAAT 4227770 29 96.6 32 ...................A......... TCAATATTCAAAACGAGCAAATTCGACTTGCT 4227831 29 100.0 32 ............................. GTATATGAAAATGAGATCAAAAAAAACAGCAT 4227892 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : CCTGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTTCCTTGAGCTCTTTGCCGACGATATGTGCAAAATCTTACTCTCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTA # Right flank : GGTCACGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGCTGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATGGTGAAGGCGTGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCGGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCAGCAGCGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCGGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //