Array 1 1839767-1835487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLL01000001.1 Carnobacterium funditum DSM 5970 strain pf3 BR44DRAFT_scf7180000000006_quiver_dupTrim_9421.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 1839766 36 86.1 30 ......TT.C.....A...............A.... GCGAGTAAGATATGAGTTCATTGTTTAAGA 1839700 36 94.4 30 ........................T......A.... GGCAAGCCCTACATACCCAATAATGAACTA 1839634 36 97.2 30 ...............................A.... TGATATAGACTTATGGGTTGATGACGAAGG 1839568 36 100.0 30 .................................... ACTACCTAGAACGCTCTCTAATCAGACAGG 1839502 36 100.0 53 .................................... ACCTAATCCCTCAATGGAATAACGCCTAGGGCTATACGTTCCTTACAAAATCG 1839413 36 100.0 30 .................................... TCAATGACAATTAAATTATCACCTTTATAT 1839347 36 100.0 30 .................................... GTAACATTTATTTTCATCCTACCCTGTATT 1839281 36 100.0 30 .................................... CTGCCATCGCGTTGATTTCTAACGCTTCCC 1839215 36 100.0 30 .................................... TCCAACCTTCATATTGAAATCATTTGCAAT 1839149 36 100.0 30 .................................... TACAGGAACTGGAAAGTCAAGTCGTTTTGG 1839083 36 100.0 30 .................................... TCTTCTTCTCCTGGATCAGGCCCATTAGAA 1839017 36 100.0 30 .................................... GACCATGTAATTTGTGTATGCCAACATGTA 1838951 36 100.0 30 .................................... ATTGGACGGGTACAGGGACGGGAGGTGGTG 1838885 36 100.0 30 .................................... GCTTTTGACAACACACTTTTATGGGCAAAT 1838819 36 100.0 30 .................................... GTTTTCTGTATTGTGACACGGATAGTATTC 1838753 36 100.0 30 .................................... ATCTTGCACGGCCTGACTTGTCTGTAAGCC 1838687 36 100.0 30 .................................... CAAACCACATTCCACCGGCTTGAGGGTTCT 1838621 36 100.0 30 .................................... TGTCGTACTTTCTACACTCTCACCTGTATT 1838555 36 100.0 30 .................................... AGAGATCATCTTTTGTTTCATATCTGCAAT 1838489 36 100.0 30 .................................... TACGATATGTTTAACCAATCTGATAAGACT 1838423 36 100.0 30 .................................... TCAACAATAGTTAACAGTCCTTGTTTTTCC 1838357 36 100.0 30 .................................... GTTAAATCGTGCATCTTGGATAAATCAGCA 1838291 36 100.0 30 .................................... AAACCCAAAGGAGTTTACTATATTAGTAGA 1838225 36 100.0 30 .................................... GAACCTACATTGTTCAAGACTTTTTCTTCT 1838159 36 100.0 30 .................................... TAGACTTAGAAAACATGGTTATACATGTAA 1838093 36 100.0 31 .................................... TGGAAGCAGAATGAATAGCAGTGAGTCAGAG 1838026 36 100.0 29 .................................... AATACATGAGAACACGCAAACCACAAATT 1837961 36 100.0 30 .................................... AACCAACGCAAGCGAGAACGTTTACACCTA 1837895 36 100.0 30 .................................... GTTGCATTTGGTTCAATGTCAATACAGGCA 1837829 36 100.0 30 .................................... TTATTATAGGCGAGGCACTACAAACACAAA 1837763 36 100.0 30 .................................... TTGCCTCAACTTCAAGAGTATTTACTCTTT 1837697 36 100.0 30 .................................... CCCCAGCACTTGCTAAGGGACGTTCATACC 1837631 36 100.0 30 .................................... GTGGGGGGGTATATAAAAACCGTAATTGGT 1837565 36 100.0 30 .................................... GTGGGGGGGTATATAAAAACCGTAATTGGT 1837499 36 100.0 30 .................................... GTGGGGGGGTATATAAAAACCGTAATTGGT 1837433 36 100.0 30 .................................... GGAGGTAAAACATGACAAAATTTAATAACT 1837367 36 100.0 30 .................................... TTGTTATAATAGGGTCGTTAGTTGCTTCCT 1837301 36 100.0 29 .................................... TACTGGCACTTGTTGCTATATTTGCAACA 1837236 36 100.0 30 .................................... TTAATGCCAACAGGTGTACTTTCAATTTCA 1837170 36 100.0 30 .................................... TTACAAATACCTGGTATTAATACGCCTTTT 1837104 36 100.0 30 .................................... TATCTAATACATTTCTGAAATAGGTAGGAT 1837038 36 100.0 30 .................................... CTTTATCTCTACTTGCAAACACTCGATTAA 1836972 36 100.0 30 .................................... CAAGGTCATTTGTAGTCGTTCCATCTGTTG 1836906 36 100.0 30 .................................... TGGATATACAGAATTACAAAACTGTAGTGT 1836840 36 100.0 29 .................................... TTTTAAAAGGTGTACGGAGTCACCTGTCA 1836775 36 100.0 30 .................................... TGGTAGAGGTATATTTTATTCTCCTAGAAT 1836709 36 100.0 30 .................................... CGAATATACCCCTGTATATACGCATTATCT 1836643 36 100.0 30 .................................... ACGGGTGAAAACTTACGCTATGCCGTTCAT 1836577 36 100.0 31 .................................... TCAGTTGTGCCATTTTCTCCACCCTTCCCAA 1836510 36 100.0 29 .................................... CGGTTGTTTTTAACTCAACACTATCGGCA 1836445 36 100.0 30 .................................... ATTTCCCCTTCAGGTGAATAATAGATGCCG 1836379 36 100.0 30 .................................... TATGTCTAACGTTAAAAATGTAGACCTAAA 1836313 36 100.0 30 .................................... AGATAGATTGATACATGGCATCTTCTGTAG 1836247 36 100.0 30 .................................... AGATAGATTGATACATGGCATCTTCTGTCG 1836181 36 100.0 30 .................................... GATGCACCTACTGCTATATCCTCCATAGCT 1836115 36 100.0 30 .................................... ATTGGACCGGTACAGGGACTGGCGGTGGTG 1836049 36 100.0 30 .................................... TGGAATGAACTTTAACTGTTACCTTGCCTT 1835983 36 100.0 30 .................................... TGGAATGAACTTTAACTGTTACCTTGCCTT 1835917 36 100.0 29 .................................... ATGGAGAAATATGGTAACGATATCAGTGG 1835852 36 100.0 30 .................................... GTTGACAAAGGAACTCGTTTTCAATCAGCA 1835786 36 100.0 30 .................................... CTAAACAAACGGTTGAAGAGTTTAAATACT 1835720 36 100.0 30 .................................... TCATTTCAATAAACTCATAGATTAGATTGT 1835654 36 100.0 30 .................................... CCTTAAGGGAACAGTGTTTAGACCGTTGTT 1835588 36 100.0 30 .................................... AAACCCAAAAGAGTTTACTATTTTAGTAGA 1835522 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================== ================== 65 36 99.7 30 GCTATACGTTCCTTACAAAATCGGCTAAAATTAAAT # Left flank : TCTAATTTCAATACTTTTCTTATAATTGCTTTGTACTCTTTATCATTTTGGGCATAGGCTATCTCTTCAAGCTCACTATTGGCTCGATCTTTGTCTGACAATTCTTCAAATAAAGAAGGGTCTTTGATTTGTTGGTTGTATTGCTTTATAAAGGCCTGAATTGCCTCATCCTCATTTTCAAAATCATCGCCATGTTCTACTAGAAACTTTTCTAATTGTGGCACAATAATCTCTGTGTCTTTCATTTGTTTCATCCTCTCTTATTGGTTATCTTCTCCCTATTTCCTATTATATAACACAATAAAACATCTATCAGCTTTGTTGTTTAATCATACTTGCTTGCATGGTACAATTTTAACTAACTTGTCTGCCTTTCCTATCTTTTTGAGGGTATAAAATTATTCCTTCAGTATTCTTCATTTTGTTGAAAGAATAGAAGAATCATTCATCAAATAAATCATCTATAATAGAATTGACTCTTAGCATTCCTTGTTACTTCG # Right flank : AGGTACAACAAATAACCCACAAGCAGTATAGGCCTAAGGGTTATTCGTCGTGTCTAAAAAACGGTCAAATTATCGGATTTCACCTTCTCCTCATTGGGTAAAGGGTCCCCTACAAGTAATCTCATTTCACTAAATTGTTTTTCTGTCAAGGTTAACATGCGTACAGAACCTTTTTCTGGGACATGATTTTCTATTTGATAACTAAATTTCTTTGCCATATCATATCCGTTACAGATTCGATAATAAATTGAATATTGCAACATAACATAGCCTTCATTTAAAAGATATTTCCGAAATTTTGTCGCAGTTCTTCGTTCTCTTTTTGTTACTACTGGTAAATCAAACATAACTAATACTCTCATAAATCTACTCATACTCATGTTGTTTCAATATTATTAGTTTTGGTAATTTCAAAAACTTTGTAGAGTTTACTCGGCAACAGCTTGAGAACGAAGAAACTGTTTTCCGAATAGCGTTTGTCAATGAATGATATTCGTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATACGTTCCTTACAAAATCGGCTAAAATTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GCTATACGTTCCTTACAAAATCGGCTAAAATTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //