Array 1 74929-77123 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFNW01000006.1 Escherichia coli strain JML055 sequence006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 74929 28 100.0 32 ............................ TGCATGTAGCGCCACGCCGTGACCACCGTCCT 74989 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 75049 28 100.0 32 ............................ TGATGAAAGTATCCTTTGCCACGTTTTTCCTC 75109 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 75170 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 75230 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 75291 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 75351 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 75411 28 100.0 32 ............................ GTGCTGAGTCGGAGGATCCGTACACAACAAAA 75471 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 75531 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 75591 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 75651 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 75711 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 75771 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 75831 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 75891 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 75951 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 76011 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 76071 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 76131 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 76192 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 76252 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 76312 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 76372 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 76432 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 76492 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 76552 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 76612 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 76672 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 76732 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 76792 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 76854 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 76914 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 76974 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 77034 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 77094 28 85.7 0 ....................A...C.CT | T,C [77114,77118] ========== ====== ====== ====== ============================ ================================== ================== 37 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 86182-86970 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFNW01000006.1 Escherichia coli strain JML055 sequence006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 86182 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 86242 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 86302 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 86363 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 86423 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 86483 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 86543 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 86603 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 86663 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 86724 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 86784 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 86844 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 86943 27 85.7 0 ...G...A...............-C... | T [86963] ========== ====== ====== ====== ============================ ======================================================================= ================== 13 28 98.9 36 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //