Array 1 51-201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCP01000003.1 Corynebacterium jeikeium strain Cj38002 159, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 96.6 32 ......................C...... ATCATCACCGCGCTGATGCCCGTTATTCAGGC 112 29 100.0 32 ............................. GTTCGTGACCGTGACGCCAGGACAGGGCGATG 173 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : GCCAGCGGGGATGAGCCGTTTAAGCCTAGCCCCGTCGCCGGTTGCGCCCGG # Right flank : TCGCGGCGTTCAGCGCGTCCACAGCAGCAGCCAGTGCTCCCCGCGCCAGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1969-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCP01000008.1 Corynebacterium jeikeium strain Cj38002 174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1968 29 96.6 32 ............................G ATTTTCACGGGTATTGCGAAGATTGTGGGCGG 1907 29 100.0 32 ............................. TCCGCGTCGCGCTGCTCGTTCGCGCTCCGCAC 1846 29 96.6 32 ............................G GAGGCTGGAAAGTCTCCGAAGAAGCTAGACAG 1785 29 100.0 32 ............................. CAGGAACCATTGCCCTCGTCGCCGAACTTAGC 1724 29 96.6 32 ............................G CCGCCTCTGATGCTGTTCCGCCAGCTAGCAGG 1663 29 100.0 32 ............................. CGTCCTCACGCGCACGTTAGACCCGCTGGTCA 1602 29 96.6 32 ............................G CTGGTCTTCAGAGCGCTGCCGTAATCCTTGGC 1541 29 96.6 31 ............................G ATCGCCCGCCGGGAGTGTGCGCCACGATGGT 1481 29 96.6 32 ............................T GACCACCTACACCACCGAGTACGACGAGACCT 1420 29 96.6 32 ............................G TCGATCCCCTCCGCCGCCGCGCGCTTCAGGCT 1359 29 100.0 32 ............................. CTGGCAGGTTTTTTGCTTGCTCATGCCCCTAG 1298 29 96.6 31 ............................G ATCGCCCGCCGGGAGTGTGCGCCACGATGGT 1238 29 96.6 32 ............................G TGCTCGACAGCGGGTGCTGTCTCTGCGGAGGC 1177 29 100.0 32 ............................. GCCCAGATCACGCCAGTTAAGCCGGTCGGTGC 1116 29 100.0 32 ............................. GGTTGGAGATACGGCCACTATCGCCGGGCGTG 1055 29 100.0 32 ............................. GCCTTCTTGAAGGCTTCGGAGCCTCCCCCCTT 994 29 100.0 32 ............................. CGATCCCCCAGACTCGTCCTCAGATAAACATC 933 29 100.0 32 ............................. CTGTGGAACGGCCTGGTGAGCATTGCGTCGTC 872 29 100.0 32 ............................. CCGTGCATGATTGAGGTTGAGGGCGACCACCC 811 29 96.6 32 ............................T GTGTACACGGCTGATGAGGTTGATGAGTTGCT 750 29 96.6 32 ............................T TGCTACTACCCGTTGGACGGCGGCGGCGACGG 689 29 100.0 32 ............................. TTTTTCCACTCGTCGGAGTCGAGCCTGCGCTG 628 29 100.0 32 ............................. CGGTTGCTAGGCACACCTGCGCCCGAGCCGCC 567 29 100.0 32 ............................. GAGCCCAGACTTCAGGATTCCAGCGAACCGAA 506 29 96.6 32 ............................G AAGTTTCCAAGCTGGCGATGGCGAATGTGAAT 445 29 100.0 32 ............................. GTTGCTAAGGGTGGTCAGGACACCGTTAAGGG 384 29 96.6 32 ............................G ATTGAGCTCTTCACGGTGGTGCCTTCTGCCTC 323 29 96.6 32 ............................T CAATGCCGGTTTTCAGGTACTCGATAGCCATG 262 29 96.6 32 ............................G GGCACTTTCGTCCCGTTGTTCACTTGGCTTGG 201 29 96.6 32 ............................G GGCACTTTCGTCCCGTTGTTCACTTGGCTTGG 140 29 96.6 32 ............................T CTGCTCGAGAGCGTTTCATAGGTGATCTAGTC 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.2 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Left flank : ATTGATTCCGAATTGTTGCTCTGGTCGGATTTAGAGGTTGTCGCTTCAGGACATAACTGGTCGAACGAAGGACCATTGGAATGATGGTTCTGGTTGTTTCTGCGTGCCCTGCAGGACTTCGCGGTGATCTAACACGTTGGCTTTTGGAGATTTCACCAGGAGTGTTCGTGGGGCGCCCCAGCGCCCGAGTGCGTGACCAGGTTTGGGAGCGCACGTGCGATCTGGTGAATGACGGTCGGGCAATCATGGTGTTTCAAGCAGCGAACGAGCAAGGATTTGATTTCAAGACCCACCGGCATAACTGGGTTCCGACTGATTTCGATGGTGTGAACCTGATTACGCGACCAAATAACCGAGCACCATCATCACGACGGCGTGGGTGGAGCAAAGCACGGCGAAGATAGATGCGTGGGATGCAGTTCGCGGGTCCAGCGGCTGGTAGTAAAAACAAGTTGAACTAGAATCGGCTTTAAGGCTCAAAGAACCACAGCTCAGAGAGT # Right flank : CTTTTTCCCAGGCGGACGTCATGAAGTCGGTCAGTGCTCCCCGCGCCAGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //