Array 1 5720-4895 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKYD01000151.1 Staphylococcus felis strain F25 k127_457, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5719 36 100.0 29 .................................... AATATTTTCATAGCATCGCTTCTCCTTGA 5654 36 100.0 30 .................................... GACATTCAATCTCTTTTCATACGAAGAGTT 5588 36 100.0 30 .................................... ATTAATCCAATTACCTAAAGGGTTAATCGT 5522 36 100.0 30 .................................... TAACCAGTCACGTTCTTTTCGCCTTTTTGT 5456 36 100.0 30 .................................... ATAAGGCCACGAAACCATTGCACCAACTTT 5390 36 100.0 30 .................................... AGATGCAAGCGAAGCATACACCTTTATTCG 5324 36 100.0 30 .................................... CCATCATTTTTATAATAATACTTTTTACGT 5258 36 97.2 30 ............C....................... ATATTAAAGACATATTGCAGAAAGTGAAAG 5192 36 97.2 29 .........................A.......... AATGGTACTAAAAAGAAAGGGAACGTATT 5127 36 94.4 29 ............C............A.......... TTTGGTTTTTTAACAGAACTGAGCAAGAA 5062 36 97.2 30 .........................A.......... TGATCCAGGGAAAGGTAACTTATACACGGC 4996 36 94.4 30 ..............G..........A.......... ATGATGTACGTACCATGTACATTGTCCCCA 4930 36 86.1 0 ........G................T....C.T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 97.4 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : TA # Right flank : ATTTTTTTCTGAATTTTTAGATATAATGATGATACTGGAATGACCAACTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGACAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACGCGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTACATGACGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 50073-51354 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKYD01000107.1 Staphylococcus felis strain F25 k127_320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 50073 36 86.1 29 ..........CGC......A.....A.......... ATAAGCATGTGACTAAGAAAAGAGGAATA 50138 36 97.2 30 A................................... GTATGTACGATATTGTTTCAGTGGACAACG 50203 36 94.4 31 ..............G..........A.......... TTTTGGTACTGTGTTTAGTCAACAAATTAAG 50269 36 94.4 28 ........G................A.......... TTGTAGACTGCACTGTAGGTACGTCAGC 50335 36 100.0 30 .................................... TTTTGAAGATTTACCAGTAAGGACTTTAAG 50400 36 100.0 29 .................................... GTACCACTAAAGCTTTCGTCTTTCATGTT 50465 36 94.4 30 ........G................A.......... AATGCTAATGTTAAAGAAGCAGACCTTACT 50531 36 100.0 29 .................................... CCTGACTCTAGACGAATGATACTTAAAGC 50596 36 94.4 29 ...................A.....A.......... GGTGCAGTCATATCATCTCGTGAATTAAA 50661 36 94.4 30 ............C................A...... TGTCTAACGGAAAAATCAATGAGGATACAA 50727 36 97.2 30 .............................T...... GATAATACTCGTCACAACATTAGCGTTACA 50793 36 100.0 30 .................................... GGTTACATTGCCTAAATATATGGTTGTGTT 50859 36 97.2 30 ..............G..................... TTCAGTATTATCGTTACCACCATTAACACG 50925 36 94.4 31 ..............T..........A.......... CGAGAGATGATATGACTCCACCTGCTCTGCG 50991 36 94.4 30 ........G......................G.... TCCCTAATCTCCGAATTCTGACACAATACT 51057 36 86.1 30 ........GT...............AT........T TAGTAATCCTGGGCACGTTGCAATAGTGGT 51123 36 97.2 30 ..............G..................... AATGAAAGAGAAAGCATTTTCCCTGAAAGT 51189 36 97.2 30 ..............G..................... AGCAGGTCAACAGTTAGTCGTATAATCAAG 51254 36 97.2 29 ........G........................... CTTCCGAAATTGAATGTTGGTACATGGTT 51319 36 94.4 0 ............C............A.......... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 95.5 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTTATCAATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTATACAATTGATTAAAAGTTATCAACTCACAACCATCATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATATTTTGAGTTTATTAATGATTATAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : | # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [12-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //