Array 1 1260341-1258327 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFP01000001.1 Streptococcus infantarius strain NCTC13760, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1260340 36 100.0 30 .................................... ATAATATCACAAAATTTTACGCATTCAACC 1260274 36 100.0 30 .................................... CAATAGTACCGTCTGAAAAGTAGCATTTAA 1260208 36 100.0 30 .................................... ACAATACTGTTAAGACTCTTATCTAAAATA 1260142 36 100.0 30 .................................... ATAATATCACAAAATTTTACGCATTCAACC 1260076 36 100.0 30 .................................... CAATAGTACCGTCTGAAAAGTAGCATTTAA 1260010 36 100.0 30 .................................... ACAATACTGTTAAGACTCTTATCTAAAATA 1259944 36 100.0 30 .................................... CTCAGGATTAATGCTTATTATTGCTAACAT 1259878 36 100.0 30 .................................... TTAACTGACTTCAAACCTCTACACCAAACA 1259812 36 100.0 30 .................................... TTCAATAATCATATTAATGATTTCAACGCT 1259746 36 100.0 30 .................................... ATCATACCATGGTTGCCATTGTCCTTCCAA 1259680 36 100.0 30 .................................... TATTTCCATTTATAACACTTGTGCCAAACT 1259614 36 100.0 30 .................................... TCATGTACTTTGAAACATGTATTATGACGG 1259548 36 100.0 30 .................................... ATTGTGTCGCCAACTTGCACTTGATAGTCC 1259482 36 100.0 30 .................................... TGAGTCACTTGTGGACTCGTACCCATGTCA 1259416 36 100.0 30 .................................... CCTCTAATGGTTTATCAATAACAGATACAG 1259350 36 100.0 30 .................................... TATACAGGTGTTAGCGTGCCTAAATTCGTA 1259284 36 100.0 30 .................................... CAGGGGTCGATAACAACATCACCCTCATCC 1259218 36 100.0 30 .................................... TTGGATTAAACAGATATGACTTTGTGACGT 1259152 36 100.0 30 .................................... CGAAAATTAAACGTTTAGGTTCAAACACAT 1259086 36 100.0 30 .................................... CCAGTGTATAATATTAAAAAAATCCCGATT 1259020 36 100.0 30 .................................... GAAAGTGCTGTTAGCTGAGAAAGCTGAATA 1258954 36 100.0 30 .................................... TAGATTGTTATTTTGAGAATGACGGAAGTT 1258888 36 100.0 29 .................................... AATGTAAAGATAACAAAGGGCTAAGCTGG 1258823 36 100.0 30 .................................... CAAAAATGAACGAACTGGGAACAGAAGTAC 1258757 36 100.0 30 .................................... CCAAACCAGCAACAATGTCTGCAGCAACTT 1258691 36 100.0 30 .................................... TTTGTAACCCCAGTCAATGTTTTTTGAACT 1258625 36 100.0 30 .................................... CTGTTTCTAATTCTTTCATTTTTACCTCTT 1258559 36 100.0 30 .................................... CAATTGATCCTTTAGGCGTTTTAACTTGTG 1258493 36 100.0 30 .................................... TGTTGACTATGTTTCCTCACCTCTTTCTAT 1258427 36 100.0 30 .................................... GCTGATTAATGCATTCAACAAGGCGTTGTC 1258361 34 88.9 0 ....................A..--....A...... | C [1258333] ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGATTACCTTGATTATGCCTCATTTATAAGAATTTGTCAGGTTATCACAAGAATGACTGATGAGTTTCCAAATTTTTATTGTACGATTTTTCCGTCAAACGAAAGCTACTTGTATGTGACTAAAGAGACAATAGAAAATATTACCATTGTTTCAGATTATATTGAATCTTTGTTTGATCTTGATTTTATGTATGAAAGGTTTCTTGGAAGATATCCATCCAACAATGTACCAACAAAAAAAGAATTTTTAATTCTTTTACAGAAGAATGCAAGTTATTTATTTAGTGAGCAAATTTCATATGTGAGTTTAGGAATTTCGGATATGGTAGCTATCAAGATACTAAATAGTTTATATCACTATGATAAGTCAGTTAAATATCCAATTTCAGAGATAAATCAGCTTGAAATAAGCTTTCTTAAGGATAAAGATTGACTTTTAGGCTCAATGAAATTATAATTCTTGTAGAGTATAAAGACCCAAAATGACGATTTGAG # Right flank : ACCAAAACCACCTAGAAATTTCCAGGTGGTTTTTCCTATATGGGTCATAGGTTTGCTAGGTTAGATTGGCCTAGTCGTTCAAGTGGTCTATGGCATACTGAGCTTCTTCGGTGGTGAATTTTGCGCGGTGTTCAGAAGTGAGTTGTTCGTAGATTTCATCTGATGACAAGTCTAGTGTTTTCTTATAACTTTTTGCTTTTTCCAAGACAGCTTTTTTATAGTCTAATTTGGCATGGTCGATAGCGTACTGAGCCTGCTCAGCAGTGAATTTATCGGCATTTTCGTTAGACAATTGGTCGTAGATACCTTGTTTTGACATGTGCATAACCTTATAATAGCTCTTTGCTCTCTTAAGCGCAGCCTTTTTGTAATTAGCTTTCAAATGGTCAACGGCATATTGAGCATCTTCGGCAGAATATTTTTCAACATCTGATGTCAATTGGGCGTAAATGCCTAATTTTGACATGTTCATGAGCTTGTAGTACTTTTCAGCCTTGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //