Array 1 71825-74041 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJX01000003.1 Lacticaseibacillus rhamnosus strain UMB0004 ERR1203597.17957_1_9.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 71825 36 100.0 30 .................................... CTTTGCACGGGTAGCTGAGGTGGCGGCCGC 71891 36 100.0 30 .................................... CAATAACAGGCTTAAGAGCCCCACCAATCA 71957 36 100.0 30 .................................... GCTGAACGTGGTAGTAATGAACGCTTTAAT 72023 36 100.0 30 .................................... TCAGATGTCCATACTTACCGCCGTCTCCCT 72089 36 100.0 30 .................................... AATGGTATCGTGCAAGAATCCGTACTGGTC 72155 36 100.0 31 .................................... TTGACCCGTAGGCGTTGTTCCCAATGTTGTA 72222 36 100.0 30 .................................... ACAATTACCCCAGATTGACCCAAAACGTCT 72288 36 100.0 30 .................................... TGTGTCGATGAGTTGGCTGCAGGCGATTGC 72354 36 100.0 30 .................................... GTTTCAATTGATTTGGATATAAATTTGTTT 72420 36 100.0 30 .................................... TTGAATAGTGTTATTCAGGGTATGCAAGAC 72486 36 100.0 30 .................................... AACTGTTGATACTCTTGAATATAAAGGGGT 72552 36 100.0 30 .................................... CTGATTCGCAAAATCCCGGGCGTGGGCTGA 72618 36 100.0 30 .................................... TGGCTGGCAAATTGTTGGAGATGCTTTTGC 72684 36 100.0 30 .................................... GGGTTATGGGGCGTTAAGCCCATTGATTTA 72750 36 100.0 30 .................................... CAAAAATGTCAATGTGTCGATGACCTGGCT 72816 36 100.0 30 .................................... TTTGGCTACAAGCATGACCCAACGGCAGGG 72882 36 97.2 30 ........C........................... GTGTCCAACTTAATATCTGACCACTTAATA 72948 36 100.0 30 .................................... TGTCTCCCACGGAAAAGTGGCACCTAAAAA 73014 36 100.0 30 .................................... TCTTCTGCCATATCCTGACCCCCTTAAAGA 73080 36 100.0 30 .................................... CACCGTGGGAACCGTGGTATCTTTCGACCT 73146 36 100.0 30 .................................... CATAAAAGTGATTAGTGTCGATTGGCGTGC 73212 36 100.0 30 .................................... ACGATGAAGAAACAGAAGAACTTGACGGCG 73278 36 100.0 30 .................................... ACGATGAAGAAACAGAAGAACTTGACGGCG 73344 36 100.0 30 .................................... GTCGTTTAAGTTGTTTCGTCGCTCTGAGTT 73410 36 100.0 30 .................................... CGATTATTGCGCCAATCACCACTGGGTTCA 73476 36 100.0 30 .................................... GTCGTTTAAGTTGTTTCGTCGCTCTGAGTT 73542 36 100.0 30 .................................... GCCAATTGAATAGGCCAGACAAAAATTGCC 73608 36 100.0 30 .................................... TGTATTTTGTACCCCCGTGTTACTTGACGG 73674 36 100.0 30 .................................... GACTTGGCGGATCTCGTTGTGCTTATTGCG 73740 36 100.0 30 .................................... TGATGGTTTTGCCGTCCGGCTTGACAATCC 73806 36 100.0 30 .................................... ATTTCGGCGATGGCCGTCTATCTAAAGATA 73872 36 100.0 30 .................................... GGCCAGCGACTGGGTGCAACAATTACTGTT 73938 36 100.0 30 .................................... CTTAGAATAGCTTTATTGATTTGGTTATTT 74004 36 83.3 0 ....T..................AA.C....T...A | C,G [74030,74036] ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.4 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGATGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAGAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTAAACAAGCTGTTAGATCAGGTTAAGGACACATCGTTAGAATTACTTCTCATTGAATTTTCAGATGTCGAACGTGGAAAGTTTTTTGAGAAATGCCAGTATATCTATATTGACAAAGATTTCATGGATAACCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : ACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCATTGTCAAAAGCAAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //