Array 1 153057-149435 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000010.1 Lyngbya sp. PCC 8106 1099428180506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 153056 37 100.0 41 ..................................... ATCTTCAGCGACAGTGATTAAGTCTTCTTCAGCGTCTTCGA 152978 37 100.0 36 ..................................... TTGTTGGTTAATGGTTATTGACTAGGGATCGCCGTC 152905 37 100.0 33 ..................................... CAAACCGTTTAAACCTTTTATTCCGAATCGCTT 152835 37 100.0 40 ..................................... TTATTATCCCGATGATACTACGATTATACCTGAATCGGAA 152758 37 100.0 33 ..................................... GCATTGCAATTTGAGCTTTAGTTGCAATCTGTT 152688 37 100.0 38 ..................................... ACTACAGTTGGCGGTGTTGTTGGTAATCAAATCCGCCA 152613 37 100.0 39 ..................................... TTCGGAGGATTGGGAACAGGTTTCGGACTATTTATTAAA 152537 37 100.0 36 ..................................... AACGAACTTGGCGATTTTTCGCAAACTTAATCGATG 152464 37 100.0 32 ..................................... GTTTCTTCGGCGGATAAAACTCAGTGCTTTTC 152395 37 100.0 34 ..................................... ATTACTCTTGCTGTTCTAGAAAGGTCTGCACTGC 152324 37 100.0 33 ..................................... TAATATCAAGTTCAAGTTCGTTAGCAACATTTA 152254 37 100.0 35 ..................................... AAGCAAATTTTGACATTATCCGCTCACCGTATAAA 152182 37 100.0 33 ..................................... CTCTGGGTTTTGAATTAATCTCCACTGATTGTC 152112 37 100.0 40 ..................................... ATACACTAAACAATCTGACACCGATTACATTGTGCTAGTT 152035 37 100.0 39 ..................................... TTCTTTAATCTCCATGTAGAAGTTTTCGGGATCTTCCTG 151959 37 100.0 37 ..................................... CTCGAATTATTGGGGTTTTTACGTCTAACACTTGAGC 151885 37 100.0 42 ..................................... CAAAAGCCAACGACCGGAAAGAATCACCAAAACCAGTAACCG 151806 37 100.0 34 ..................................... CAAGATTACTGAAGATTATACCCTAACTGCACCT 151735 37 100.0 33 ..................................... CACCAATTGGAAAATCAAGCACGGTGAGGATGG 151665 37 100.0 32 ..................................... TTCTTAAATTTAAACTAAAAAGTTCGGAATTC 151596 37 100.0 35 ..................................... TTTATACTGCTCAGATTTCATTTCAACCATGCTTG 151524 37 100.0 50 ..................................... AATTCTCGGTAGACTTCCGGTGATGGTTTCTCTCCGTGCAACTCTAGATA 151437 37 100.0 34 ..................................... ATTGTCAATTAATCCTTTAATTGAAACTAGACCG 151366 37 100.0 32 ..................................... GTCTCTGACTGGAAATCAGGGGCGCATTTAAT 151297 37 100.0 33 ..................................... AACCGTATGTTGCTCAGGTGCTTGTATTTTTCA 151227 37 97.3 34 ........A............................ AGCAGATTTCAAACAAACGAGCTAAGGGTGAACG 151156 37 100.0 33 ..................................... ATGTCAACGGCAACGCCGTAGCTAATATAAATG 151086 37 97.3 38 ........A............................ TTTACTCACGACTTCCATCACTTCAGCATCAATCGATT 151011 37 97.3 33 ........A............................ TCTAATTTGTAATCAATAGCTGTATCTTGGCGG 150941 37 97.3 40 ........A............................ TAGACATTTTTACCCCGCGCTGAAGAAGTAGCAGTAGAAA 150864 37 97.3 41 ........A............................ CCAGTCGGAGACATTCGGCGGCTAGTTCGGGGCGTTCAACG 150786 37 97.3 34 ........A............................ ATTATCAATTTGTAAAAGGTATTGTAACAGAAAA 150715 37 97.3 33 ........A............................ TATTGGAACCAGAAGCCGAACCTGATAAAACCG 150645 37 97.3 35 ........A............................ GGATAACATTAGGGCTGAACCCACAGAAGGGCAGG 150573 37 97.3 36 ........A............................ TTCCCCAAGTGTCATGTTTGCTCATTCTATTTATTC 150500 37 97.3 36 ........A............................ TTTATTGATTTGTGATCCGATTAAAGAATCTAAATT 150427 37 97.3 33 ........A............................ GAAAGCAATTCAGCTATTTAGATATCAAAACAG 150357 37 97.3 40 ........A............................ AATGGTTTATGCCTTTGCCGATTAGGATCAATAGCTTTAA 150280 37 97.3 35 ........A............................ ATCCTCAACGGTCTCGAACAGTTGGTTGAACCATT 150208 37 100.0 31 ..................................... GACCGACAACTAAGAACACAAACCGATTATA 150140 37 100.0 39 ..................................... CTACTTTATATAATTCGCCATCGTTGATCGTTGTTAGGT 150064 37 100.0 34 ..................................... AATTAAATATCTATCAGCACCCATTTTTCCCCAG 149993 37 100.0 34 ..................................... AATAGACATCACCTCCTTACATTCCCCTGATCGG 149922 37 100.0 35 ..................................... GAAAACATCACAAAATCAATCTCAGCGTCTAAAAC 149850 37 100.0 37 ..................................... AATAAAATGGCATCCCTGGGGATGAACTCGAAAAATC 149776 37 100.0 41 ..................................... TAGAACTCAACTAGCTTTGCTTCGCCTGCCTTGGTCAAGAA 149698 37 100.0 34 ..................................... CTACAACAGCAGAGAAGCTTGAGTAGTTGAAATT 149627 37 100.0 40 ..................................... TTGAAGACCTTAGCCGCAGCAGAAATGCCCATTGGAGTGA 149550 37 100.0 42 ..................................... TTGAAGACTTTAGCGGCGGCGCTAATCCCCATGGGAGTAATT 149471 37 94.6 0 ...T....A............................ | ========== ====== ====== ====== ===================================== ================================================== ================== 50 37 99.2 36 CTCGAAATCACCTATAATCCCTATTAGGGATTGAAAC # Left flank : CGTAATTCGTCCAGGGTTTGTCTGGGAAGCGGGAGAGTTGGTTTGAGTTGAACGAGGAGTACAGCTTACTGCCAAAAACCAGCACAAACAGAATAAACTGATCAGGTGTAAGATAGACTGACCTCGACGACGGGGAAACCATCGCGACTGAAGGGTTTGATTTAGAGATCTTGCGAACATTGGCTTTTTGATTTTATCAATTCTGAACTTTCGATAATAGCCGATAAGTGTCTCTGTCTTCTTTTGATCTACGGGTGACTCTACATCGTTTTTTGCGCCCGAGGGTAGGTGTAGAATTTTGATAATGGTTTTCAAGGGCGCGATCGCTGATGGCGTCTGGGTTTGCGGTTGTTCTGAAAATTGAGGGGTGGGCGCATCCCTCTGTGTAAGGGTTTCAGCGTTTTTGACAAATCTGAGATGATCAGGTATTATAGTTTTAGTCGCACCAGGCGCAACTGCTCCTCGAAAACTAAATATATTAAGGGTTTCAGAATGCCGCT # Right flank : GCTATATAATCATAATTCATATTAACCCTCAGTCGTAGAAAGCTTGAGGGAGTTTAACAACAACACTAACTCTTGGTTTAGAACCTCATATCCTTGCGAGTTTAAATGTAATTCATCCTTTGTATATTTTCGCTTGATAGCGCCTTGTTCATCAGCAAGAACCGAAAACGCATCAAATACAATCACATCTTCACTCGCCAAACTGTTAATATAAACATTAACCTGTTCAATCGCCTGACTCACATCATCTGACCAAAATGGTTTACGTTCAAGGGGAATTTCCCCAACTGGAAAAATAGTGGTGATCAAAACAATAGCACCTAAAGCTTTTGAATCTTCTACAATTTTCTGGATATTAGCTTGACAGTCAGCAATCGTTAATTCTTTTCGCATTGGAAATAATGGAATAGTTTTTAAATCATTAACTCCGACTTGAATTAACACTATATCCGGCTTTAGAGGGGTAATATGTTGTTCAAATCGTTTAACTGTTTGTATCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGAAATCACCTATAATCCCTATTAGGGATTGAAAC # Alternate repeat : CTCGAAATAACCTATAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 77502-79021 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000008.1 Lyngbya sp. PCC 8106 1099428180536, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 77502 37 100.0 40 ..................................... CTGAAAATAAAAACGTTGTATTGTAAAGCGATCCTGTAGC 77579 37 100.0 33 ..................................... ATTTACTGCGAAGGCCGAACTGTATGGAGTAAA 77649 37 100.0 49 ..................................... CCAACCGCGATTATTTCCGCCGAAGTTGCGGTGATAGCCTCGACTACAA 77735 37 100.0 33 ..................................... TATTTTACTCTTTCCAAATGGGGGAATGCAAAG 77805 37 100.0 34 ..................................... GTTTCTGAATGCTTACTCAAATCAGAGATAAATG 77876 37 100.0 42 ..................................... TAAATTGAGAAGTTTTTGAGCTACGTTTCGACCTGTTTTCCG 77955 37 100.0 34 ..................................... TTTTGGGGAAGTATCAGAGCGTGACGTGCGACGA 78026 37 100.0 38 ..................................... ACTATGGCTTATATGAGGGGCAGGACAAAGTAGTTTTT 78101 37 100.0 33 ..................................... CAAAACAAGATACACGTCGAAGAAGCCAACCAG 78171 37 100.0 37 ..................................... TTGGAAATACTTCAAGCATTGAAGGATGGAGGCTTGG 78245 37 100.0 40 ..................................... ATCAAATCTACCCCCCGCTTTACTGAGGGGTTGAAGAATA 78322 37 100.0 40 ..................................... CCCCCAAGCAGTCCTCAGCGGCCTGTGATATTCATCTAAG 78399 37 100.0 31 ..................................... AAAAGCCCTGTATCTTCGTTGATCGTTGAAT 78467 37 100.0 36 ..................................... ATAGAAAAAACCCTACATTGTATTAAACATTAAGAA 78540 37 100.0 46 ..................................... TACAAGATTACTGATATCAAGTTCCGCTCCCGACGATTGCACTATA 78623 37 100.0 36 ..................................... TTGTTCTCGGTAAGAAATGGAACGAGAAACCAGCTA 78696 37 100.0 32 ..................................... TACAAATCTCCCAACGAATACTTCCCGATACC 78765 37 100.0 37 ..................................... TTTCCCATTAATAATATTAAGAGGAAAAAATAAACCG 78839 37 100.0 34 ..................................... GACATATTTCCTGACATCAGCAATTCAAATCCGA 78910 37 100.0 38 ..................................... CGGAATTCCGAACCGTGAGAATCATTCCCAAAACTCGG 78985 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 21 37 100.0 37 GTTGCAATTAACAAGAATCCCTATGAGGGATTGAAAC # Left flank : TACTGATCTTTGATGACTGGAATTGCTTTGATGGAGATAATAATCGAGGTCAACGAAAAGCTTTTCGAGAATTTCTAGAAGAAAACCCGCAATTTGATCAAGAAGAATTTATCTCTTATGGAGCTTATGGTCAAGTTTTTATCATCCATAAAAAGTCTTCTGAAGTCTAACCTCTGTAATTGATAGTCAATAACCCGGCTTCCTAGAGAAATCGGGTTTTTAGATTGGGCGACTCTTATTGAGCAGTTAGGATACATGATTTTATCCTCTATTTGCGCCCACGGGTGGGTATCAAAATTTCGCGATCGCTGTCAATGGCTGGAGGAGTTATGCTGTCTGGGTTTGCGGTCGTTGGTTCTGTGTAGAGGTGGGCGCATCCCACTGTGTAAGGGTTTCAGGGTTTTTGACAAATCTGAGGCAATCCGGTATTATAGTTTTAGTCGCACCAGGCGCAACTGTACCTCGAAAACTGAATATAGTAGGAGTTTCAAGATTCCGCA # Right flank : CTGAAAGCAATAAAAACTATTTTCTATTATTTCTTGATGTGTGGTTAAGACGGGTTTTTAAATGTTATTTGTGAAAAATATACATTTGTGTATAACCCGCCCCAACTGTTTTTGATTCCCAATTAAAGGATTTATTCGTGAGTTAAATTGGGATCAAACTTGACCAACAAACCCAGAGGAAAATGTTGTAAAATCGTACCGACTCGGATCATATTCGCAGCAGGAATTTGAAAATCAGTAATTTTTTCATGCCAATCTGATTCAGAACCATTGGGAATTTCAATCGTCGTATCTCCCCAAACATCCTCTCCAGTCGGAAATACTCCCGCTTGAACAACACCTGTTAGAAATCGAGGAATCACAATAATTGCTGTCTCTTGTTCATAAATACGAGCAAATGCAATAATTCGATCTTGATGTTTACCCATCACTTTCAGAGGAACATAATTTCCATACTGAAACAATTCCACAAATTGCTGACGAACTTCCAATATTCGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTAACAAGAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 88116-86583 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000008.1 Lyngbya sp. PCC 8106 1099428180536, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 88115 37 100.0 37 ..................................... CTATGAACTGACTAACGTTGACGAAGACTTAATTCGC 88041 37 100.0 41 ..................................... AGATTAGCTGGCGACAGATTTATTGATCTGTCGTTTTACTT 87963 37 100.0 34 ..................................... GCAAGCCAGGCAGAGGTTCTAGGTAGAGTATTCA 87892 37 100.0 46 ..................................... AAATCATCGTGATCGCGGTGATCGGTTGATATAGCGTATATATCAA 87809 37 100.0 52 ..................................... ATAGCAGTTTATCAGTTGGAACGGTGAACTTGGTTCGTAGCTACGATTAGGA 87720 37 100.0 35 ..................................... TACACATCAGATGGCGGCCCTCTGCCGGTACCGCA 87648 37 100.0 34 ..................................... ATTATCATGCGGGAGGTTTGTAAACGAGATAACT 87577 37 100.0 41 ..................................... ATGGTGGCGCCGCCCTCTTTTAAGGCGTTGCAGATCTGTTT 87499 37 100.0 41 ..................................... CGCGAAGAATGTATCCAATCATCACAGACTTGATATTGTCG 87421 37 100.0 33 ..................................... GAGTAGTGTTTACTGAAAATGAAGGGTTATTGT 87351 37 100.0 38 ..................................... TTCACCGCCCCAAATTTCATTCCAGAATTTCTGCCCCA 87276 37 100.0 42 ..................................... TAACTGCCGAGGGCGCGACGAACTTCATTGTAGCGATAGAAA 87197 37 100.0 33 ..................................... TTCCCACCAAAAACAATTAGTGTAAGTAAATTC 87127 37 100.0 35 ..................................... AAAAAGTCAAGGTTAAGAAACATGATAGATAAATT 87055 37 100.0 30 ..................................... AACCAAGTCGTGACGCTCGGTTTTTCCCAT 86988 37 100.0 36 ..................................... CGGCACTCCAGAATTCGAGCATCAGACTCAAATCTG 86915 37 100.0 40 ..................................... TAATTTTGCTTCCTTTAAGATACTTTGAACGGAAGAAGAT 86838 37 100.0 35 ..................................... CAGGAGTCAGACATGAGAACAGCGATATCGGTTCA 86766 37 100.0 36 ..................................... CGGTGATCTACGCCCGATCCGGGTGATCAACGCCTG 86693 37 100.0 37 ..................................... AAGAATCGCTTTCCAGAGTTTGCTATAACTGCCTGTG 86619 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================================== ================== 21 37 100.0 38 ATTGCAATTAACAAGAATCCCTATGAGGGATTGAAAC # Left flank : AGCATGACTGGACACCCGACAGTACAACACGGTTTGCTTTACAGGAGAGAAGCTTTGAGTATAGGACTCAATGTCATATCTGCGCTGACCAGATGGGGTTTTTATCGCTTGAATAATTCCTTTGTTTTCCCATCTAGCTAACGTTCTGACGTTAACCCCTAGATGTTCTGCCGCTTCTCTTGGTTTCAAATACTTTGTCACCTCGTCAACTGTAGACAACGGACTTATAATACCGTGTTGTACAACTAATCGTCAACTAAGTGAACCTCTTTTTGCGCCCGAGGGTGGGTCTCAAAATTTCGCGATCGCTGTCAATGCCTGGAGGAGTTATGCTGTCTGGATTTGCGGTTGATTGTCAGAACGAGAGGTGGGCGCATCCCACTGTGTAAGGGTTTCAGGGTTTTTGACAGATCTGAGGAAATCCGGTATTATAGTTTTAGTCGCACCCGGCGCAACTGTACCTCGAAAACTGAATATAGTAAGAGTTTCAAGATGCCGCC # Right flank : AGAAGAAAGACCAGATTTTGCAGGGGCTAAACTCCAATCTGGCCGTAAATCTTTCGCACCCCGTAGATAAGGATGATGAACTTCCGTTTGACTGGCGGGTAAATTGACATGAACCAAAAACCGGATACACCGTTCTAAACTTCCCGGAACGTGCATCTGTTGGACATCGAGTAACGGAACATTATCCCACTGGGGACGTTGACGAGCAATAGCAGCAGGAAACGTAGCATCAAGATCGCGAGTTGCTGTAAAGGTTGTGCTGATGATCTGTTCAGGTTTAAGATGATTTCGGGTTTCGAGTTCATCTAGTAGTTCTGTCACCGCTTCAGCGATCGCTTCGATAGAATTTTCCGAAACGGTTGTTGCTCCACGTATTGCTCGTACACGCCACTCCACGAAAAGTCCTCCAGTTTTCCTCAATTGTGCATTGTTGGTTGAAATGTTCGATGAGAACGTTTCATCTGAATCAATAGCATTTACTATTTGACTCCAGTTTACTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACAAGAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 244171-243459 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000002.1 Lyngbya sp. PCC 8106 1099428180510, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 244170 37 100.0 37 ..................................... GTACATAGAATAAAATAACAATGATTAGGAGGATTTT 244096 37 100.0 37 ..................................... GTGATGATTTATTCGAGTTTAATTATTCTGAAGCTAA 244022 37 100.0 34 ..................................... CCTGATAGCTAGCTGTTTAGTGTAGCACTTTTGA 243951 37 100.0 40 ..................................... TTTGGTTGTTCTTTAAGCTGAAAAAATTTATTGTTCCATG 243874 37 100.0 43 ..................................... ATAGACTTTAAAAATCTCCTCCCTTATATATGGGATGTCGAAT 243794 37 100.0 35 ..................................... TCTTCTGTCAGGCATTAGATACCGATCAGGGTGAA 243722 37 97.3 36 ...........T......................... TACTTCAATTCTATAAGAGTCTCTTTTTTGAAACCC 243649 37 97.3 42 ...........T......................... TACTATCTTTCTCAGGATAAAATTTAACTGTAACTAATCCTT 243570 37 100.0 38 ..................................... CAATTTGTACCCATCTATTCCTTTAAAGAAGTAATCGA 243495 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 99.5 38 CTTTCCAAAGCAAAATTCCCCGCAAGGGGATTGAAAC # Left flank : AACAACATATTCTCCTCGAAACCCCGATGGAGGAACCCGCTTGGAATTTACTCAAGGAAAAGCTACCCTCTCATCTTCATTCTCGGTTTGTCTACAGCAAAGGAAAAGTCACCGTCAGGGGTTTGGGGGTGATGAATGCGACGAAGCAATTGGAATCTTTAATTGAATGGTTCGATAAAATGCAGGATGTTCTCAGTGAGAAGCAAGAGGAAGTGTTGACCGTCGGTTGATTTTCTGGTTTTTGGGAGTTGGGGGTAGACAAAATGCGATCGCTGTTTTATGATGTCTGTAGTTAGATTTTTCGTGAACCGAAGCGGAGGCAAAAACCCCAGGGGGTTGACGAAAAACGCCAGAACCTAGACAAATAAATAGTTTCACAGTTTCAATCTTTGGGAAACAAGCCGGAGTCAGGAAATTTTGAAGCCTGAAATGAACCTAATTTTTGGGTTCACGAAAACTGCTTCTAGAATTCCCTCCCAGACTCAGTTTCAATCGGCGGA # Right flank : CAGCCACCACAGTTTTCAGAACCTTTTTTCAGGGTGCAAGCCTTGCACCCCTACAGATATTTATTTTAAACTTGTGGGTAACGCATTCCAAAACGGTTGTTGTGAACCCTCACGAGTTGTATTAGTTCCAGTATACAAATCCCCCTTTAGTTCCTGATAATAACTATCATCAAGGAAATTCACATTTAACCCCGCTACAACCAACCGTCTTTTAAAATCTTCCTGAGCATAATCTCGCCCATCAATTAACGCTCCCCGAGGATTGGGTGCCAACAATTCCCCATTCACAGAAACGACATTAATTAAGTTCGGCCACCAAGCATATCCACTATACCCAAATAATACCGGAACTTCCACTATTTGATCCTCATCGAGATTCAATTCTCGCTTCAGTTTCTTTAACAACGGATCAATTTTTTCTCGCTGTAACTGTAAATTATGCTGAACCAATAACCGATTATTCAAAGCCGCCCTGACGGTTGTTTGGGTACTCAAACCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAAGCAAAATTCCCCGCAAGGGGATTGAAAC # Alternate repeat : CTTTCCAAAGCTAAATTCCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 15768-16811 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000062.1 Lyngbya sp. PCC 8106 1099428180408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 15768 37 100.0 40 ..................................... CTATCAACAGCAACAGCAGGGAGTACCATCTGAAGAAGCT 15845 37 100.0 37 ..................................... AACGAACCTGGCGATTTTTCGCAAACTTAATCGATGC 15919 37 100.0 39 ..................................... AGTAATGGCAGCACTGGCAATGTTGGCTATTGTCAGATT 15995 37 100.0 33 ..................................... TGATTAGTTTTGCTGTGATTATGCAATCATTCA 16065 37 100.0 34 ..................................... TTGACAGCGCGGATCATAAATCCAACACCACCTT 16136 37 100.0 33 ..................................... GAAACAATACCCATCAACCATTAACAAATCTAG 16206 37 100.0 34 ..................................... CACCTCATCATCGGATAAACGCAAAACATAGACT 16277 37 100.0 33 ..................................... AACTTTTGCACTATCTAACGCCGGATAATTTGT 16347 37 100.0 33 ..................................... ATATGGTTCATTTAACCGAGACATCTGCTCAAA 16417 37 100.0 36 ..................................... GCATATCCATTCTTCCATTGAGGGTTGGCGAGAATC 16490 37 100.0 34 ..................................... TCACTTTCGACAAAACGCATTGTACGATCAAATG 16561 37 100.0 33 ..................................... GCAGGTATCAGAGGATCTCGAGAAAGGGGTAAG 16631 37 100.0 35 ..................................... ATGAGGGTAATGAAGTTGCGGCTCGAAGAATTCTT 16703 37 100.0 35 ..................................... ATAAAGCAAAAACCGCCAAACACCCGCCATGTATA 16775 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 100.0 35 CTAGAAATTACTATTAATACCTATTAGAGATTGAAAC # Left flank : GGGGGCGGGATTTTAAACGCATGAAACCGGGTAAGGGGAAAGCCTACAGCCAGCGTTGTCCGGTTTGTCATCACGAGAATAAAGAACAGAAAGACATTACCAACCATCAAGATTATAATTGCTCAAATTGTGGGTTTACTCACCGAAGTCGTGATATTGTCCCAGGCGTTAACATGATTTTGGATGAGTTTGAAGCAGGAGATATTCAATGGGATGATCTCAGTAAAGAAGCCCGACAAGCTTGGCGACTGCGAGAAAAATGGCTTTCTGAAAATGCGCCTGGGAGTGGCTGTCAAGATGAAGTGACTACGGATAAGCCCTCAAACGCCCGCAGAAAGAGGAATCGGAAGAAAAAGACTTGATAATGGCGGGCGCATCCGATAGAATAAGAGATAGGGATGATTTAATGCGCTTGAGCCTCCCTATTTCTGTCTTGATTTCCAAGCCTCGCGCAATGTACCTGGAAAACTCAATACTATCAATTCTTTCAGCATCCCGCC # Right flank : CTGCGGACACTCTAGACAACCCCTATTATGACATCATCTAGAAATGACTGAAACTATTTTTATAATTCATCATTCATAACTCCTAGTTTAAACCCCACTTGATCCAAATCCCCCCTCTCCTCTAACAGTCGAACTGAGTTGTTCAACTTCTTCAATTTTGGCATGAATAACGGGTGCGATGACGAGTTGGGCGATTTTCATACCTTTATTAATGTTAAAGGTAGTTTTCCCATGATTGATTAATATTACCCCTATTTCGCCGCGATAGTCTGCATCTATTGTACCCGGTGTATTTAATACAGTGATTTGATGTTTGAGGGCTAAACCGCTACGAGGGCGAACTTGGGCTTCTGTTCCTGGTGAGAGTTCGATAGAAATTCCCGTGTGAATCAGTTTACTTTCTCCCGGTAAAATTTCTTGTTCTTCTATTGAATATAAATCCATTCCAGCATCATTGGGATGGGCGTATTTTGGCACAATCGCCGCTTGATTGAGTCTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAGAAATTACTATTAATACCTATTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 42367-40779 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000040.1 Lyngbya sp. PCC 8106 1099428180552, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 42366 37 100.0 42 ..................................... AATAGAGTGCTTTTCCTGGATTAACTGGCAAAGTTCTCGCTG 42287 37 100.0 40 ..................................... GATAGACAGCTAAGAACACAAACTGATTATATTTTAGAAG 42210 37 100.0 44 ..................................... TATAATGATGTTGTAGTTTGATATCAACAAAATGATTAAGTATG 42129 37 100.0 36 ..................................... ACTTTAAAATCAATTTATTCACCATCTGGTGAATTT 42056 37 100.0 33 ..................................... AGATCATCCCGTGATCCGTTATCTTTGATGGAT 41986 37 100.0 36 ..................................... AAGAAGCGCGATGGTGGCACGAAGGAAAAAATTTTT 41913 37 100.0 41 ..................................... ATTTTTTAACACCCTATGGAGGACACATGATATTAGTGATT 41835 37 100.0 34 ..................................... CTCAAAAAAGTCTTTTCAGTAGATTAAATTATGG 41764 37 100.0 39 ..................................... AATAAAACGGGGAGGGAGAATAGGTTAGACCTCCCCGTT 41688 37 100.0 32 ..................................... TAGTTCAAAAGTGATAGCCGGATACGCTAGAA 41619 37 100.0 35 ..................................... AAATTGGTTTTACCTTCTAGCTTTCTAGTCTTTAT 41547 37 100.0 35 ..................................... CACATTAAACGCATACCGAGATGACCTTATCAGAA 41475 37 100.0 35 ..................................... TTAAGATCTTCTGTGAGTTTGTTTTTGCCACTTCG 41403 37 100.0 35 ..................................... GACGGATTAAAGCTTGTTGAATCTAATTTCTGTCG 41331 37 100.0 37 ..................................... AGGAAATGTTCTCAAAAGTCATCTAGAAGCTGAACAG 41257 37 100.0 41 ..................................... ACTTACGCAGGCGTAGCAGGGATTGATCCTAATTACAAAAA 41179 37 100.0 37 ..................................... AAACACAAGAGCAAAAGTTTAGGATGAAGGGAAACGG 41105 37 100.0 37 ..................................... TTCTTTAGGATTGTAGATGGTTGCTCCTCGACAGTGA 41031 37 100.0 37 ..................................... TGTCGCAGGTCACGTTTTTGTCGCCAATGAGATAATT 40957 37 100.0 35 ..................................... GAATCAAAATCAACAAAGGATTAATTCAACCAGCA 40885 37 100.0 33 ..................................... TCAGAGCAACGACACCCTGACTTGGTTTATCAA 40815 37 89.2 0 .................................GGCG | ========== ====== ====== ====== ===================================== ============================================ ================== 22 37 99.5 37 GTTGAAATCATCTATAATCCCTATGAGGGATTGAAAC # Left flank : TGTTTGTTGTCATTAGCTACGATATTTCTGAAGATAAACGCCGCACCAAAATTCACAGTATTCTCAAATCCTATGGACAATGGATGCAATATAGTGTGTTTGAGTGCGATTTGACAAAAACTCAATACGCGAAGTTACGTCGTCGTTTGAGTAAACAAATTAACGCGGAGAAAGACAGTATTCGGTTTTATTTTCTCTGTGAGTGCTGTCATGGTAAGGTGGAACGGATTGGCGGTGAAATGCCTCGGGATTGTTCGATTTTTCTGGTATGATGCGCCCCCAGGTGGGTGTAGAAATCAGGCGTCGTGACAAAATGGCTGTAAGTCTTGTTCTGTGTAGATTTGAACGGTCTTGGTTGTCTAAGGGGTGGGCGCACCCCATCTGGTAAGGGTTTCAGCAGTTTTGACAGGAACGCGATGATCACCTATAATCTTAGAAAGCCTAACCGGGCGCAAACGAACCTTGAAAACTTAATCTGTTGTGCTTTTGAGGCGACCGCA # Right flank : CAAAGCTTCGTCCATACAGGAGTCTAAGAAATTGCTAAAGCAGGTTTTGCAGTTAATAAAACCCAAAAGATAGCAAGAAGGATTAAGAGTATCGCATTGAAACCATATCGCAAAATATCTTTATTCCAATTTTTAATAATCATAATCTCTTTGTATTTTTAAGGTTAAAAATTATTCACCCAATCTGATCCAACTCTTAAAGTTAAATCTGAACCAATTTCCCCAGTCGAAGAAGCTTCTACTTCACCCCAACCTAACTTATTTTTTAAGGCTTCTGCACTGGATAAATTCCCTCGTTGAACGATAATCTGAGTTTGACGTTGTTTATCAGGCCAGTCGGGAACAATATAAACATTATAATAACCTTGATTGACTAAAGAATTCGCTATTTTTTCACCGACTTGTGAATTTCCCGACGCATTTTGAATCGCAATTTTGAGATCAAGAGGTAAAGTTTTTGAAGTTGAGTCTGAGTCTGCGGAGGAATCGGTGTCTAAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCATCTATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 54108-52807 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000033.1 Lyngbya sp. PCC 8106 1099428180530, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 54107 36 100.0 38 .................................... TTGCGAGAGTAGCCCTTGATCGGCTTCTCACCTAAAGC 54033 36 100.0 47 .................................... GGAAGAAGGCTCCCGCCATAAAAAATAAAGTGATCATCGAAATGTAT 53950 36 100.0 43 .................................... TATCTTTAAGTGCCGATTGTCAAGTGTCAATCATTAAATTCGT 53871 36 100.0 35 .................................... GAGATTAGTGGACGTTCTCGAAACTCCGCTTGCAT 53800 36 100.0 36 .................................... GGATTTCATCCCCAACATTTTCACCCGAAACTTCAA 53728 36 100.0 33 .................................... GTTGTCAGCAGCCCCTACGATTGCTGATAGCAA 53659 36 100.0 42 .................................... ATAGCAACTCATCGGCAATAACGAGAATTTTATTGCCTTGTA 53581 36 100.0 36 .................................... ACTGTTGCGTCAATCAATGCAACAAGCTTTTGGTAT 53509 36 100.0 40 .................................... ACTCCATTACGGAGAAACCTATCTCGACTATCGGAGTCCG 53433 36 100.0 36 .................................... ATAGACATAATTCGTCCTATCGTGAGTTCTAGGGGT 53361 36 100.0 35 .................................... TCCTCCTGTAAATCTTCTTCCATTTCTTTTCCCTG 53290 36 100.0 34 .................................... AAGGCTTCTAACGAGTCTATGCGTTGCCAAGTCA 53220 36 100.0 39 .................................... CAACTGTTCTTGGTTATTTATTCGATAAACGACCATTTT 53145 36 100.0 36 .................................... AGAATTGGAGAACCAACGGCATCTCCAACGGCTTCA 53073 36 100.0 45 .................................... CTACTGATAGAGCAGTAATCTTTAGATTAAGTAACGAAAGTTCAT 52992 36 100.0 37 .................................... AAGATGTACCAATCTCAACTTGAACAGTTCAAGGCTG 52919 36 100.0 41 .................................... AATTGAGAATCCTTTTTGTCTAACGTTCCCATTCCTGTCAA 52842 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 18 36 100.0 38 GTCGCTATTCTTCGGAATAGTGGAATTAATGGAAAC # Left flank : ACGATTCGGCTAATCAATATCAACCTTACCTGAACCGTTAAATTATGCTGTATGTTGTAGCTTATGACATTCCCAGTAACCAACGCCGAAGACGGGTTTCTAATCTGCTCGAAGGTTATGGAAAGCGAGTTCAATACTCGGTTTTTGAATGCGTTCTAACTCCCCATAAATACAATGAGTTGCGAAAACGGATGAAACTTCGGGTGAATTTGCAGGAAGACCGCATTCGCTTCTATCCCCTGTCTGGACACACTTGGAATCAAGTTGAAGCTTGGGGCGTAGGTCAACCTGTTGCTGAAGCTCCCCGTTCAATAATTGTTTAGCGAGGCTCAGGAAAAATGGCTGTATTGACGAGATTTCGTTGGGAGCCTCGATAGTATACTCCGTATTAGTTTCAGCGATTTTATCCCGTTCGGGTGAGACAAAAATTGGCTCGATTTTGGTGAGCCTCGCAAACCTCCTCTAGACATCCGACTGGATAAGGGTTTTAATAGAGAGGA # Right flank : TGAGACAACAAATAAATAGAATTAACTGTTTGCCCTCGGTGTCGCTATTTTCAGAAAATGGAGTAAATAAAAACTTGTTGTTCGCATCAAAAGTCTTCTCTGTCCTCAAAAAATAGTTCATCCTAATAGAAGAAAACTAATATCAGGGAGAATAAAATTGGACGGAGTAGGATTAGCGATCGCAGTAGTATTATTAATGTCAATTTTTTGGCCGTCAGCACCCAGGCCTGAACCGCCTCCACGCCGATTTTATGCAAATCGTATTGAGTTGAAACGCAGAACAACAGAAGATCCCGTAGATTGGGGAAGTCCCTATGACGATTAAGTTCAGATAAAATTGCATTAAAAAAATCCCCCTTTTTTGAGAAAGAGAGGGGGAATTGATTTAAGAAAAATTCAGATTTTAGTTTGTAGTTGTCGCATAAATCTGTTGAATTTGTTCACCAATATTTTGAATTTTCACCCTTAATTCTAAAGGTTGAATTACCTTTACATGATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTATTCTTCGGAATAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 81544-82406 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000032.1 Lyngbya sp. PCC 8106 1099428180534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 81544 37 100.0 36 ..................................... CAACACATAACAACGGAAGCATCTCAATCTCAGGAT 81617 37 100.0 42 ..................................... ATTTCAAGTTGATTCTTTAGTTCTAAACGATCAACTATCAAA 81696 37 100.0 33 ..................................... ACTGATCGAACTGTTCCGGTGTTCGATTGTTCG 81766 37 100.0 33 ..................................... ATTAGCTAGCTGTGGTTAGTGTTGCTTTTTGGT 81836 37 100.0 36 ..................................... AAGTCTACCTTTGATTGTACGGGAAACCCCTGCCTT 81909 37 100.0 37 ..................................... ATTTCTCTATAAAAACCAACTGAGGCAACTAATGAAA 81983 37 100.0 35 ..................................... CTGATAGACAGAAAGATAATGATCATTAAGTAACG 82055 37 100.0 42 ..................................... TTCGTCAAATGCGATCGCAAGGACACCAAGTTACTCCCCCAT 82134 37 100.0 49 ..................................... GTTTTCGCCATCGAATGAGATATAAAGCCCTGCCTGTTGGCGATCGCCG 82220 37 100.0 36 ..................................... CATTAGTAGCTATCGGAAGAAACGAACGGAGACGGC 82293 37 94.6 40 ...............C............A........ TATAAATTCGTTCATATCGAAATAATTTTGAACAATTAAA 82370 37 97.3 0 ...............C..................... | ========== ====== ====== ====== ===================================== ================================================= ================== 12 37 99.3 38 CTTTCCAACATTAAATTCCCCGCAAGGGGACTGAAAC # Left flank : AGATGCCGCAAACTTAGAGGCAATTTCTCAACTTTATTACAGCGATCCCTTTCCGATTGTCTTCGGAAAAAAAACGGATATTAGTAAGTTTATGGACTCAATACAGTGTATTCGAGTGTTTTCTGACCAGTAAACAGTTTGTGATGCTTCAACACAAAGTTGAACGTTTGGTTAAAAAGGAAGATTCGGTTAGGATTTATGTGTTGGATGCTGGGGCGGTGAAGAAAACGATCGCTTACGGCTCCGAAAAGCCTAGACAAGATGAGACGATTATTCTATGATGTATTCATAGCAAAAATTTGGCAAAGCCAAGCGGAGGCGAAAACCCTGGGAGGTTTGCCAAAAATGCCAGAACCTCGACAAATGAATAGTTTCACAGTTTCGGTTGTTGGGTTTTGATGCCGGAGTCGGAATCTTTCGAGGGCTGAAATGAATCTCTTTTTGAGGTTTGCCAATTTCGGCTTCAGAATGACCACCCAGACTCACTTTCAGTCGGCGGA # Right flank : CATTTTTGGTTAATCAAGGTTTAGACCTCGACCCAAAAAAAATCTCCCCGACAGATCGGAGAGAACAATTCTTGACATCCTCCCAACGCCAACATTCTTTATGGCGTGGGATTCCCAAATATCGCTATTTAGGTTTCTGCTTCTTCCCGAGCGGGGCGAGCGCACCTGCCCTCCGAGAGTTATTCTCTTCAGGTCTTAAAGTCGCTCCACAGACTATCCCCGCAAGTCCTGCGGTTAGAGATGTGTCGAAATCCAAACTGGAATTCTCTTTAACTGTTGATTCAAGGGATGTTTATGCCCATTGCCCTGTCATCTTTCCCCGGTCTACCAATTTGTCTGCGCCGCCAGTGTACTGGACGCGCGCACGCTCATGGCTGTCTGAATCCATTGTCTCGGGTGGGTCGACCACTTGTATTGTACCAGAAATCCCTGTGCGGCATTCCTCCCAACTCCAACGTCCCTATCGTCGTGGGTCTCCTGCCGCCGGAAGATGATAATTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACATTAAATTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 83148-81133 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000022.1 Lyngbya sp. PCC 8106 1099428180539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 83147 37 100.0 38 ..................................... CCCAGAAGAAAAGCTGAATCTCTAAGCGCCGACGAAAG 83072 37 100.0 40 ..................................... CACGAACCAGACTCAATATCTTCCGGCCCGGCGGAGCCTT 82995 37 100.0 31 ..................................... TCTATCCCATTTCTGTAATTCAGTATCATCA 82927 37 100.0 35 ..................................... ACATATTCAAATTCGTGAAGCTTCTGAATCACCAG 82855 37 100.0 35 ..................................... GTCTCGCTTTGACCGGACGGTTGCCTTCGCTGGAA 82783 37 100.0 40 ..................................... TATTGGATGAACCGACAACACTCCCAGTTACTCACAATGC 82706 37 100.0 37 ..................................... CTCGGTATTGCTGCTCTAAATGCTCTCTTGTTGAATT 82632 37 97.3 35 ........A............................ CAATCAAAGTTATAGGCAAACGATGATGCTTGGGT 82560 37 97.3 33 ........A............................ AAATCAATTAAATTGAACCCAGTGTCTGCACTT 82490 37 97.3 40 ........A............................ TTGCCTAATAGACGGACTGAACTGTTTTTCCCTGCTCCGA 82413 37 97.3 37 ........A............................ TTGAAAAGCTTAGAGTATTGGTTTCTGAACCTGAATT 82339 37 97.3 33 ........A............................ TGATGAATTAGCGCAAGAGTCTGCAATCAAACG 82269 37 97.3 35 ........A............................ ATAAGCTTCTACTCGCTCTGGCGACCACCAAATCC 82197 37 97.3 38 ........A............................ TCAAAAAACATCCTATCATCGTTGCGATCGCATTGAGA 82122 37 100.0 37 ..................................... TAAATCCTGTAATCCCATCATTTGAACGGGTTACGGA 82048 37 100.0 38 ..................................... TTTAATCTTTTTGATTGCTCTTTGCAGTTTTGAGAAAA 81973 37 100.0 35 ..................................... ATTAGGGTGATTCGACAAACCCCCTTCCCACAAAA 81901 37 100.0 33 ..................................... AAATTATTTTCAAAAACATGGGTGCTATGATGG 81831 37 100.0 36 ..................................... AAAATCCATCAAATTGCGAACTCGCTCACTTGCCTG 81758 37 100.0 43 ..................................... TGGAAGTTTTGTATGCACCCGGAGAGGAAATACTTCTTTGGAA 81678 37 100.0 37 ..................................... AGGTTCACCTTGAGGCTAAGGGTAAGGATTTCTGGAA 81604 37 100.0 34 ..................................... TGCCCATCTGCATTTATATAAACGTGATCTGGAT 81533 37 100.0 39 ..................................... AACACTAATCCAGAAGCAATAATTCTAAAAGTCAGAGGT 81457 37 100.0 34 ..................................... AGAGACGATTATGCTCAAAGGGTTGAATCACTTA 81386 37 100.0 34 ..................................... TACGATATTGAATATGTATACAATTCATTTAAGG 81315 37 97.3 32 .......................C............. TCAGGATGAACGGATGATATTAGAACGGGAGC 81246 37 100.0 40 ..................................... GACTTCTGCGGCGTGTATCGGCTTTTGGCGGTGGTGTTGT 81169 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 28 37 99.2 36 GTTACAATTACCAATAATCCCTATTAGGGATTGAAAC # Left flank : CGTCTGCGAATTGGGATTAATACTGGGCCAGTTGTTGCTGGGGTTATTGGGACTCGTAAGTTTATTTATGATTTGTGGGGAGATGCGGTTAATGTGGCGTCACGGATGGAGTCTCACGGGGAAGCCGGGAAAATTCAAGTCACAAAAGCAACTTACGACTTATTAAAAGATCAGTATATTTTTGAAAAACGGGGAATCATTGATGTTAAAGGGATAGGTAGAATGGCGACCTACTGGCTACAAGGGAGAAAATAACTGATCGGATGTCTTTTTTGCGCCCCCGAGTAGGTGTCAAAATTGGGCGACTGCTTTTGAACGCTGAATTTCTTACTCTGTCTGGGTTTGGGGTCGCTCCTGAGTTCGAGAGGCGGGCGCGTCCCACTGTGTAAGGGTTTCAGCCTTTTTGACAAATCTGAGGCGATCGGGTATTATAGTTTTAGTCGCACCAGGCGCAACTGCACCTCGAAAACTCAATATACTATAGGTTTCAATGGCTTACA # Right flank : ACTACCAAAACTTATTAATTTTACATTTTATTAACGGGTTAGATTGTTAAGTTAACCGTTTTGTTAAAGTCTGCGTTTCTATTAGATTGATAGCGCTGAAGCACAACACCGCGCGTAACAATAAATCAAGGTTTTCATAAAATCTAGTGAAACTCCTGAAGTGATAACAGAGATCTTTATGAAAGCTGTAGGGAATGGAAATGAACGTTCAACAACAGGAACTCTATCAACGCTTACAAGCCTTTTCGCTGGATGAACCTAACGCCAAATATTCTTTTAGCAAACGCCTAGCCAGAGAGAACGGTTGGACTGTAGAATATACTCAGCAAGCGATCGCAGAATATAAAAAGTTTGCATTTTTAGCGGTTGTTGCTGAACATCCCGTTACGCCTTCAGAACAAGTCGATCAAGTTTGGCATTTACACTTAGCTTATACTCGTTCTTATTGGGATGAATTTTGTCCGAATATTCTGCAAAAACCGTTACATCACAGCCCAACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTACCAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTACAATAACCAATAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 122899-123829 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000018.1 Lyngbya sp. PCC 8106 1099428180525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 122899 36 100.0 37 .................................... TAAACAATAGGGTTTGAACCACTGATTAGTAAAACTT 122972 36 100.0 38 .................................... GATTGACTTACCGTTGATAAATACCTCTGTAATGTACA 123046 36 100.0 42 .................................... TCTCCTGTTAAGATTTTTCTATTTAATTTAGAATCGTCTGCA 123124 36 100.0 42 .................................... GAACCGAGAGGAGTAAAATAAGCGATTGTTTTGTTGTTGTCT 123202 36 100.0 35 .................................... TTAAACAATTGTTTAACTACATATCCCTTTTCTCT 123273 36 100.0 35 .................................... GAGAAAAAATCTTTCAGTGTCACGGATTCTATTGA 123344 36 100.0 44 .................................... AAGTAAATCTCACACATTATCAGCGCGTCGAACGGGTCGCTTTT 123424 36 97.2 36 ...G................................ TTCACCAAGGAGGTGAAGATCTCGATCAAGTCTTGA 123496 36 100.0 36 .................................... AAGTTGGGAGATTTTGCTCTCAAGATCTTTCGTTGC 123568 36 100.0 38 .................................... CACCCTTGAGCCATCTCCTTCATTGCTTTTTCTGCTAT 123642 36 100.0 40 .................................... GTCCCGTAGTTTAATGCTATTGATTCATCTAGGCGACTGC 123718 36 97.2 40 ...G................................ GTCCCGTGTATGACTAGGATTTTGGGGTAATCAAAGGTTG 123794 36 77.8 0 ...G.....................A.A.AACC.T. | ========== ====== ====== ====== ==================================== ============================================ ================== 13 36 97.9 39 CCCTACCGCCTGGGTTAAAGCGGATTAGTTGGAAAC # Left flank : GGGGAATGGTTTACGCTGGCTTAAACCGGGTAATACGACTGATCGCTATTTGGTTTCTATCGAAGATTGGCGTCTGTTGGTTTGGAGGGCAATTCGTGAAGATCAGGAGGGTTCAAAATATCCTAATAAGATTAAAATAGCCAATCCCGAAGCGGAACGGCGATCTTATTCTCCTTTTATTCGGATGGAGTTTGTGAATTAACCCACGATGGGGTTTGAGTTTTTTCGGCGATCGCATTTTTGGTCATTATCTCGCGGAGGGTGGCTATCAGTGCGATCGCTTGGGGGACCATCTTTGATTTTGGCTTTGACTGGCTTTTGCGAGGCTCGATCAAATTGGGTTCAAACCCGCATTCTCTCGTTGAGAGCCTCGATACCCTTGCTGGTCTGGGTTTCAGCGTTTTTGAACGGAGTTGAGGAGGAGGATTTTGTCTATTTTTTTGACAGCCTCGATTTTTGCTTCTACAATATCGATTGTGCAAGGGTTCTACATCCTAGCC # Right flank : CAAAAAAGGAGAGGAAAAAACGCCTCTCCGTTATTTTTATAAAAGGAAAAAGTGGGAGCATCTTGCTCGCTGATATAGCCTTACCTCCCCACCTCCCCATCTCCCCATCTCCTCACCTCCCCACCTCCCCATCTCCCCATCTCCCCATCTCCCTATCCCCCCACCTCCCCACCTCCCCACCTCGTTATTCCCTAGTCCGAAGTTTGGGGCCACAACTTTTTAAACAGTTTTTGTTCAGAGTTGAGAAACTGTAGAAACTCCTCAGAATCTTGGGAACTATCAGGAAAAAAGATGAATAACTCTAAAAATTGAGTAGTTTTCTTGGGGATAGGTTTTTTAGGATTGTTGGGATCTTTCTTCAATACCACAAGCGGATACATCCGATGCCAAATTCGTCCGACTTGACTCACTTTTCCCGTCAGATGAGATTCATAAATCGTCCCTTCTGTAATGCGAAATTGGCGATCGCCCCGACGATATGGCCCGTGAAACCAATTCAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGCCTGGGTTAAAGCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 15945-18074 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000020.1 Lyngbya sp. PCC 8106 1099428180548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================ ================== 15945 35 100.0 39 ................................... CTCTATGACTATTGCGACGACTGCGCTTTTGTTATGAAG 16019 35 100.0 48 ................................... TTGTGGCAAACTATTAAAGTTTGGTACTGGATTAAAGGAGAATAGAGG 16102 35 100.0 40 ................................... GAACATATTCGGGTAGAAGTTTAGACTGCAACACTGAGTG 16177 35 100.0 40 ................................... TCACCCTTGAGTTCACAGATTTGTGTCGCTCGCTCAGATG 16252 35 100.0 37 ................................... AAAGAACTGAAAAAAGATCCTTTTTAACTGTTTGAAG 16324 35 100.0 42 ................................... TGCTGTTTTAGCTTTAGTTGATACGCTGTCTTGGCAGTCGTG 16401 35 100.0 43 ................................... TCAACGTACAACGCATCGACAGTATTGCGAACTTTACCCCGCG 16479 35 100.0 37 ................................... CTCGTTGTCTTCTTTAACAATAAATCCTAAGTCTACG 16551 35 100.0 43 ................................... TTGGTTAAAGGGTATTTTGCTGGGCAGTTTGAGGATGGGCTTG 16629 35 100.0 45 ................................... TTATCGGGTAAAGGCTAGCCCTCTTTCCTGACCTTGATATTTAGG 16709 35 100.0 41 ................................... TAATGTTTTTTGTTGTTTATCGCCTGTAATATTACAATATG 16785 35 100.0 40 ................................... TATTATCCTTGTGTCGAAATAAGGACGGCTAACTCTCTAG 16860 35 100.0 43 ................................... AAGTCTCTAAGAGACTGGATATCGTCATTGCAGTTGTAGTGAG 16938 35 100.0 39 ................................... AGCCTCTAGGGTGTTACTTACACACTGTAAGAGAGACCG 17012 35 100.0 39 ................................... TTATGTCTGATCCTTTCCTGTATTGCTCTATAAACTCAG 17086 35 100.0 37 ................................... AGGTCTGATGTAAACCGACCGTCCCAGTCAAAATAGC 17158 35 100.0 40 ................................... ACTACTTATAAATTTGAGAAATTAGGAAATTATTTAAAGC 17233 35 100.0 36 ................................... CATCCACACCTGTTCGTGTAGATTTTGAATCAGGGC 17304 35 100.0 39 ................................... GGTACTGTGAATATATTTATAATGAAGATCCTTTAAGTC 17378 35 100.0 37 ................................... TGCAAACCAAAGGAAAGAGAAAACAGGCGTACAGCGC 17450 35 100.0 37 ................................... GTTTAAATAACAGTCGTCTAGTTCAGCTAAAAATTGC 17522 35 100.0 40 ................................... AAGAAAACTCAAATGGTGAGCAAGTATTGCCTTCAGCATC 17597 35 100.0 39 ................................... ATAATGATAGGAAGGAGAATGATTTTCCTCGGCGGATTC 17671 35 97.1 38 ...................T............... TGTTGTTTGCAGAATTATCAAACATAATTTTCTCCTTC 17744 35 97.1 39 ...................T............... TTACCTAAAATAAATCCTAATTGGGTTAGTTCAGTTAAC 17818 35 97.1 43 ...................T............... TATGCTTTCCATTATTGTTGATCGAGAACTCTTAAAGTTTTGC 17896 35 97.1 36 ...................T............... TAAATAGATGGAAGGATTACCCCTGACAGATTTATC 17967 35 97.1 36 ...................T............... TTCTAGATAGAAAAGCGCAGATCGTCCGTTTGTATC 18038 35 82.9 0 ...............T...T........CA...GT | CT [18064] ========== ====== ====== ====== =================================== ================================================ ================== 29 35 98.9 40 TCCCTACTCGCTAGGGAAACTAATTGAATGGAAAC # Left flank : TGATTCGGCTAATCAATATCAACCTTACCTGAACCGTTAAATTATGCTGTATGTTGTAGCTTATGACATTCCCAGTAACCAACGCCGAAGACGGGTTTCTAATCTGCTCGAAGGTTATGGAAAGCGAGTTCAATACTCGGTTTTTGAATGCGTTCTAACTCCCCATAAATACAATGAGTTGCGAAAACGGATGAAACTTCGGGTGAATTTGCAGGAAGACCGCATTCGCTTCTATCCCCTGTCTGGACACACTTGGAATCAAGTTGAAGCTTGGGGCGTAGGTCAACCTGTTGCTGAAGCTCCCCGTTCAATAATTGTTTAGCGAGGCTCAGGAAAAATGGCTGTATTGACGAGATTTCGTTGGGAGCCTCGATAGTATACTCCGTATTAGTTTCAGCGATTTTATCCCGTTCGGGTGAGACAAAAATTGGCTCGATTTTGGTGAGCCTCGCAAACCTCCTCTAGACATCCGACTGGATAAGGGTTTTAATAGAGAGGAG # Right flank : TTTGATAACGTTCAAGCAACTTAAGAGCGGATTCCAAATGTTGTGTTGCCAAAAATGCAGGAGCAATCACCTGTACAGACTCCATATAACCTTTTATCCAGAGTAGAAATTCGTTATGAGAGCGGGGTGGAAGTTTAACGTAATAATCAACACACTGAAGATTTCCCTGCTCATCTTTTTGAGGAGCAAGTTCTTGTTTCGCATGGCGGCGACTGCCTTCAAGAATAATCTTTGCAACTGGCTGAAAAAACCGGACATGAATTAAAGTTAATTGCAAACGTCCGCACAGTTCATCTTTTTGTTCTTTGGTATCTCCCAGGTACAAACCCCAACCATTATTAAGTAGTTTGTGGGCATCGGCGAGGCGTTGGCGTTGGATAGAAAGAGAGCGCCGGGGAGTATCAAGAACCCGACAATATTCTCCAAAGCGGTCAATTCTTCCCATAGCCAGATGATGCCTTTGACAATCTTCGTAAAGCAGATACCAAGCACTGTTATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCTACTCGCTAGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 28085-27521 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000020.1 Lyngbya sp. PCC 8106 1099428180548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 28084 36 97.2 41 C................................... AACGAAACAACGAATGATTTTCAGTTGATGCTAGTCAGATA 28007 36 100.0 42 .................................... TTCCAAGAACCATGCTTCTCCTTGGAAACCTATGATTGTTTC 27929 36 100.0 45 .................................... AAAAAGTCATGCTATGACGGTTTCATTTTGACCAACATAGGCTTG 27848 36 100.0 34 .................................... TATTTTCAAAGAACCACGGTGAAACGCTGATTAA 27778 36 100.0 35 .................................... GATACCCTTGTCTACGCTCCTCATGACACACTAAT 27707 36 100.0 40 .................................... CAGTCCCGTAAACTTTTCTCAAGAAATTGGGGATTTTAAC 27631 36 100.0 39 .................................... GATTTACGGGGAATCCAGTTCTGGGAATGAGGAGTTACA 27556 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 8 36 99.7 40 GTTTCCATTCAATTAGATTTCCCAGCGAGTGGGAAG # Left flank : AGTTTTGTAAAACTTTAACTCCTGAAAGATTGGCGTTATAGAGAATAATGTATGCAACTGATTCCATTGTCTTAATATTGATTGAATAAGTTTACTAGAGATTGATAAGCTTTTAAAAAACTCTTGATTCAAAGCTTGGGTTATAAAATACTGGAAATTCACTCAAGACTTCTCCAGTTTCAGAAAAACTCACCGGATCTTGAACAACTGCAATCGGCGCTCTATTTCCTAGAGTATAAACTTCAGAAGCTTCAAAGGTTTCTAGAACTTCAATTTCATTGTTAACAACGGTGTGGTCGTAGGATGTTAATCTAATGCGGATTTTTTCATTCATGGGTCTAAGGCTTTAACGATTGAGCTTTAGTTAGGTTTAACATCGATTAAATTGATACGCAAGTTACAGCAGTTGGTTAAAGTCCCTTTTAAAACAACTTAATTCCAAATTAATACATTCATAAAAATTTAGGAGAGATGTTTATTCTCTCCCTTTTTGGTTGCAA # Right flank : AGTTCGTCTGAGGAGCCTTACTGGGCGCGGGTTTCAGACTACAAATCGACGCACCCCCAAAACTTTAACTTGTAATACGTTTGAAATCGTAATTAATACAGACCTCAAACAACTACCAGGTAAGGCATCGACGCAGGTCAGCGAAAGAATAGGCTTTTCAGCTATCTGTCGAGGTGTGTCGATTTAAGTTTAACACACAAGAATTATTTTGTAAAATCCCTACTCTGTAAACTTTTCAACCTTTAAACCCTTCATTTTTTCAATCAACAGGAAAAATTAGGATTTTGTATTTTTTTTCAATTTAACTATTACGAACTGGTTGTTTTACTTCTTGGCTATCCTTAATCTTACCATCTTCTTAATTCAATGCGGAGTCGGACTTGAGAACAGTTAAACCCCAGTTGTAGAGGGACTCAACCAGACTTTGTTCAGAAATTTGCCAGTTTGAAGGACAAACCATTAGCATTGTTTCTACAAAGCGAGTAGGATATTAGGACAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGATTTCCCAGCGAGTGGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 122463-120714 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000016.1 Lyngbya sp. PCC 8106 1099428180562, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 122462 36 100.0 37 .................................... TACATTTCTGCGTACCGGTCAAAGGATATAACCCCTT 122389 36 100.0 38 .................................... TTGCGCTTCAGCTAGCCATCGTGCAATCCAAGCCATGT 122315 36 100.0 38 .................................... TGATTCAAACAAGAAGTTGTGGGGTAATTCCAACTCTA 122241 36 100.0 42 .................................... AAATCGACTCAGATAAAATATTCTAAAGACAGGAGAATTAGG 122163 36 100.0 35 .................................... ATATACCGTGTAAATTTCCTCAACTTCAGTAGGTG 122092 36 100.0 37 .................................... CGATCAACCCATCTTTTAGGAATCTTGACTGGATATT 122019 36 100.0 41 .................................... CTATCCTTGACTACCTCCACTTCTTTGTATTTACCGACCTT 121942 36 100.0 35 .................................... AGGAAACTTATTCCGACTGATTTTTTACAACCTTT 121871 36 100.0 45 .................................... ACAATAGGATTTTCAACCGCACCGTTCATTCGTTGTGAATATACA 121790 36 100.0 37 .................................... CCCATACTTCATCGAGATCCATAGAAGCTAACAACTT 121717 36 100.0 37 .................................... CATCAATAGCGTATTCTTCTATTAATTCTTGAATTAA 121644 36 100.0 42 .................................... CCAACAACAAAACGATCCATCTTAACGAGATTGCGACATCAA 121566 36 100.0 36 .................................... AGTTGATGCTTAAGCCTTAGTTTTTAGCCAGTTTTA 121494 36 100.0 39 .................................... ACCTTGTAAATCTTTACAAGGTTTTATTTTTATGGAGGA 121419 36 100.0 41 .................................... TGGATATTGGTTGTCTGAACACTTGCTAATTTGTTGTTTTG 121342 36 100.0 37 .................................... CTATGTATTGCCGAATAAGAGTATCTGGAAACCTTTT 121269 36 100.0 35 .................................... TGCCTTCAAAACTTGATTGTTTGCGATCGCGCGGT 121198 36 100.0 36 .................................... ACTGTATGAAGCGTTGCGCCATCTCCGGCGTACAAA 121126 36 100.0 39 .................................... AGCAACATAGCGGCGCGGGAGATAGCTAGATCTTCATTC 121051 36 97.2 43 .......T............................ CATACCAACAGCCAGGGGCGACCTCGACTCGACTCATTTGATT 120972 36 100.0 42 .................................... ACAATTTTGGTGTAAATTTTGTTCTCCCCATCTTTTTCGTAG 120894 36 100.0 36 .................................... CAACAGAAAGATAGGGTAATGTCAGGAAGATGTTTT 120822 36 100.0 37 .................................... AGGATTTTGGAATAGTAATGTCGCTGCTGCTGCGATC 120749 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ============================================= ================== 24 36 99.8 39 GTAGCGACTTTCATTAGAAAGAAAAGGTGTTGAAAC # Left flank : GTTCATAAAGTTTGTAGCACTAATGCGAAGGATAAACCGAGTTGGTGTGGAATTATTGATAATGAAGATAGCAAAAAGAAGGGTAAAAAACCTCGACCTTCGGGTTATGCAGTGCGAGAATATGAGAGTTTCTGTTTGCTGACAGTATTCGATCCCGATGTTGAAGAAACTCTCCGCCAAAAACATTTTACTCGCATTTGGCTGTCCCAATAATCGGGTTATGTTTTAAGGATGGGGGTGAATAACCTGTTACTGAGGCGATCGCAAACCCCTGACACCGGACTCCTGATCCGGATTAATTTCTCTGAGTTGACAATTTTTGCGAGGGTCAGGCAAAATGGCTGAAAGGCTGATTGTTTCGTTGAGAGCCTCGATATCCCTCCCTGTAAGGGTTTCAGGTTGTTTGCTCGACCGTTTTACCCCAATGCGCGAGGCTGTTTTGAGTACCCCTCGCAAACTGGGTCTAGACACAAGGCAGGGTAAGGGGTTTAAATAGAGGG # Right flank : CGCAAAAAAATAAAGGCACAGTCTAACCGTGCCTTTTCTCTATAACTGAAGTATATTGTAGTGAAATCGAACGACTTTAAGGTTCAGTTTGACTATTTTTTGCATCCTTGAGTCGCATAGTCCAAAATTGAATTGTATCGGCAATTTCAATTAACAAATCCGTCAACAAAACCTGTTCATTGAAATTCAAATTTTGAAAACGTTCCTGAAATTCATCCGTTGTCATATTGGAGCGAATGTTTAAATCATTACCAACAATTCTACACAAAACCACCCGTGCAACACCCCAAGCAAAATAACGCCTTTGTTCGTCCGAATCTTGATTAGCATCGGGTATTTCTCCATTTAATAACCGGAGAGAACGAGACATCGCCCAAAAGCGTACAACGCCCCAATTGGAGACGTAATCAGCAATACCACTGGCCGCACCTTGCCACTGTTTAATTTGCTCAATTGAGCCGGCACCCGCCTTGAGGAGTTGAAAAACTTCTCGATCCAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGACTTTCATTAGAAAGAAAAGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 139841-139514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVU01000016.1 Lyngbya sp. PCC 8106 1099428180562, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 139840 37 100.0 37 ..................................... TTCGGTTGTGGCTTTGAATCGAATTTCTTGCCTTCCC 139766 37 100.0 36 ..................................... CAAGATCATTCAAAAAGCCGCAGCCGAAGGTAAAAC 139693 37 100.0 34 ..................................... CTGATGCGGAATTAGAAGAACTAGAAATCCGCTA 139622 37 100.0 35 ..................................... CTCAGTGGTTCATGAACGTACAACCTTTACTAGAA 139550 37 89.2 0 ..............................A...TTT | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 97.8 36 CTGCCCAACTATTAGATGTCATTAGGCGTTGATCCCA # Left flank : GGTGAGAGTGATCATTTGGTGAATCAGATTTTCATCTGTTCGGAGTTTCCGAAAGACAAGTCTTTATATTGGTTAATACAAAATCCTGATGGAGATTTGACTTTACCCTATTGGGTTGATCATGTCGGCTCCTGTGGAACGCGCTGGCGACGTTATCTGATCGAGGAGTTTCAGGTATTGGAACCACCAGAGCAATCCTGGACTTTGATCGAGTCTTCGTAAGAGGTCATTAATTTACATACAGTTGCACGATGTCCAGTTTTTACATGGATATCCGCCTGTCGAGTCTGATTGAACCCAGAACTAGCTTGAATCTTTTGCTAGAAAGGGAATGTAGCAATTTTTAACAGACTTGAGGTGCTTGTAAGTGGTTAAAGCATGATATAGTAAGGATTATAGCTTCTGTATCTTTCTGTCGGTAGCAATATGCTTTGTTTCATCGGTAGGTGCTTGCAAAATTATCTGACAGAGTGCGGTAGCTCAGGGGTCTGGCAGTTGCC # Right flank : TTGTACTCTAAGATTGCCCATCATGCTAATTGGGATTCATCTTCTTTATAAGTAAATATGACAGCATAAGTTGAAGTTGACAGGCTAATGCTGATGCTTCCCCATTGAGGGATGACCTTATACCCCAGATCGATTTTGTTGTGTGACGCTTGCTACCCGCGAAAACCCCTGTCATCAAATTATCTGGCAGTCGAAAAATAAGTTTGGGTGCGGAAGCTTCGCGTGCGCGAAGCGCAATCGCCATCAACTGCATTTATTATCGAAGTGTACCAACTGTGGAACCCCCTTTTCAATTCCTGCTCAATGGATACAAGGAGAGTGTCCTCACTGTTTCCTACCATTCACAACAATGCTAAAATGTCAAAAGCACCTCTAAATACGGCTATGGACTCGACTACCGAAACGTTAGAAAACCCATATTCTCAGTTTCAAGCTGCCTGTTCCAAGATTTACATCGAATTGGTTGACATGGAGTTGACAGTCCAAGCAATGGTATCACG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCCCAACTATTAGATGTCATTAGGCGTTGATCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //