Array 1 9416-5441 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDN01000029.1 Loigolactobacillus binensis strain 735-2 scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================================================================================================================== ================== 9415 33 100.0 36 ................................. TATCCCACACGAATAAAACCATGGGCGCTGCCCAAA 9346 33 100.0 33 ................................. AATTCTCGTTTTTGGTTTTCATCAAGTTTTACG 9280 33 100.0 33 ................................. ATAAACGTCTGTCTGATATGTCTAAGGAAAAAG 9214 33 100.0 35 ................................. GATTGTATTTTGACGCTAATTATCAAATGGGATAT 9146 33 100.0 35 ................................. CCTCTAGAAAGGTGACAGCAGTTGTCTTACCAGTG 9078 33 100.0 34 ................................. TTCATAATCAAATGCTTCAGCAAAACATATCAAT 9011 33 100.0 34 ................................. AATTTAATGCTGAGCAAGCAGCAATTGGATTAGG 8944 33 100.0 34 ................................. AACTTGTTGTCTAGCTCCGATATAATACATTGCA 8877 33 100.0 33 ................................. AGTGCCCACAAGAATGACCATTTTTGAGTTTTT 8811 33 100.0 33 ................................. CATGTTCAATAATCACAGGCACCAGCTGCTGAA 8745 33 100.0 35 ................................. CGACTGATGATGCCACAGAGTGGATTGGTACAGAC 8677 33 100.0 36 ................................. TACTATCCCTTATTCGGATATAATTAAATTCTGAAG 8608 33 100.0 34 ................................. TTGCCAACAATTTGCTCTTGCTGGGCAACCCACA 8541 33 100.0 35 ................................. TACCAAAAGATATAGTGTTCCTGGTGACAATCCGA 8473 33 100.0 35 ................................. TGCATCCTTGTCTAAATCGTAAACAGAGGAATCAG 8405 33 100.0 34 ................................. ATCACGCATTTTTTGAATCTCGCGACTAAATTTA 8338 33 100.0 32 ................................. ATAGCATGTTCGGAAAACTTTATTGGTATGCA 8273 33 100.0 34 ................................. ATACTAGCTATGTGCGAGATAGTGGTCTGATTTT 8206 33 100.0 35 ................................. TCTATTGCTGATTTGCTAAGGTTAACTGCCATCAT 8138 33 100.0 34 ................................. AAAATTAGTTGCTGATAAACCGCAAATTCAAAGC 8071 33 100.0 35 ................................. GCTGACAAGACTATCTCCATAATTGCGCTGGTAAT 8003 33 100.0 35 ................................. AAATTATCGTAATGGCATCACGGATGTCGAAAAGG 7935 33 100.0 34 ................................. CCTCCTTAGCTTGCCTGTTCCTGTTCGATCAGTG 7868 33 100.0 36 ................................. ATATTTTCATCAAAAGTTTGCGGCGTCTCATCCTTG 7799 33 100.0 35 ................................. CTTGGATGACTTACCATCAACTTCCAGCGCCGAAA 7731 33 100.0 35 ................................. CAAGTCAAATAACTGAACTACTTTGGCAGCATCAC 7663 33 100.0 35 ................................. AGCAATATCAGCGATTGTATTTGCAATTTCTGTCG 7595 33 100.0 33 ................................. AACAAACGTAAGGCCAAAAATATGGTTTATCCA 7529 33 100.0 35 ................................. AAATCAGGGGTTAGTGGCTGTAGTTGCTTATGCTA 7461 33 100.0 35 ................................. CAGATTCTATACGTATAAGGCAGGTGCAAGTGATG 7393 33 100.0 35 ................................. TTTTTTCCTTGACATGCTGCGCAAGCCATATAAAA 7325 33 100.0 35 ................................. ATGTAGAAATTATCACACAAGATCCAGCTTGCCTT 7257 33 100.0 34 ................................. AACTCCCTGGCGACGTTTGCACGTACTGTTAGCT 7190 33 100.0 37 ................................. TTAACTATATTACAATTAGAAAAATAAAAAATTACAA 7120 33 100.0 34 ................................. AGATACCGCTGAGCATGAGTATGCGCTGATCAAA 7053 33 100.0 35 ................................. AGTAGTTAAGTTATCACTAGTATCAACTTTATATA 6985 33 100.0 34 ................................. AACTGGTACTGACACGGCTATTAGTACGTCTACT 6918 33 100.0 35 ................................. ATCAAATTGACTTTACTCATAGATCGCTTATCAGC 6850 33 100.0 35 ................................. ATTACCGGTAATTGAAATTAAATTCTCTTGATAAA 6782 33 100.0 34 ................................. GAGATAGTTAGCCTTAGTCACCTTAGTTAACTTT 6715 33 100.0 35 ................................. GATGACCATCACCAAGGTTAAACTTAATTGGTAAA 6647 33 100.0 34 ................................. GCAATTTGGGGCTATACCCCTGTAGTTTTTTATC 6580 33 100.0 34 ................................. TATCAATAAGGAGGCAAGACTATGTGCTATGTAG 6513 33 100.0 35 ................................. TTAAAATCCATAGCCGGATTAGCCGGTTTAAAATC 6445 33 100.0 35 ................................. GTGCAACTGCTTAGTACGGCCGTACCAGAGATATG 6377 33 100.0 34 ................................. ATCAAATTGACTTTACTCATAGATCGCTTATCAG 6310 33 100.0 35 ................................. GATCAATTGGATATGTTTGCTCATGTTATAACCTC 6242 33 100.0 34 ................................. TATTAAATAGCAAAAGTCAGATCGCGTTTCCCTG 6175 33 100.0 33 ................................. GTAAACGCAATCAACGATTAACTGATGTTGACT 6109 33 100.0 35 ................................. GTTTACTGTTATTGGGACGCCACAGCGCGGCTGGC 6041 33 100.0 36 ................................. TGGTTGGTCATTAATTAAAGGAGTCTGTCATACCAT 5972 33 100.0 33 ................................. AGTTTGCAGTGGTGTGATTGTCAAAATAACATT 5906 33 100.0 35 ................................. AAATCAATCTCAAGGTGTCGTAAAGCATGCTACTA 5838 33 100.0 34 ................................. ACCAAAATGGGTATTCAGTTTTATGACACCTGCC 5771 33 100.0 33 ................................. AATTGATGGGGTTAATTTAGTTGAAGTATGGGA 5705 33 97.0 33 .............................C... CCGATATGGTTGAGGCGATGAACCAGATGCTAC 5639 33 78.8 134 ..............A..........GAGA.CG. CAAATTAGTAAATATCATATTTCACACGCATGTACACAAGACGGGATCAAAATAGTAGAACACTTAAGAACAAAGTCGCTCATTCTCCTTCTTTTATCAAAATCTAGCTAAAAAATATTTTCACTGAGTGTTTT 5472 32 75.8 0 ........T.T...A..-..TA..G...A.... | ========== ====== ====== ====== ================================= ====================================================================================================================================== ================== 58 33 99.2 36 GTCGCACTCTGTATGGAGTGCGTGAATTGAAAT # Left flank : ATCATGTAACAGTGCCGCCAATCCGGCCATACATCCTAAATTTAATTTATGGCCTAAACTTTCAGCAATTTTTTGACAGTCTAATAAATGATCCTTCAGCAATTGATCAGGTTGTCGCTGACCATTACTCATAAATGGACCAGGATGAGCAATAAATTCCATTTTGTACTCCTTTTTTATCTTAATTAAAAAGGTTGTCCAATCAAATTGTGATTCAAAACTACTCAATAAGATTGGAAAAAGACCAATTTTCAATTTTATCTGGTCACTTTTCTTTTAGAATGATAAAATTCTAGTGATAATACTAATTCACTTATCTCATCTTTGCAATTAGTGCGGGTAACAAGTGCACACATTTTTGCTAGACGTTTCGCACCGTATTTTTCTCTCTTAACTGCACTAAATACGTATTCTCATCCTAATTCTTGATGTATTTTTAATTTGAGTTAATATTATCCACAAAATATAGACAATTCATTTATTTTCGGCCATATTTTGCG # Right flank : TTAGTTTAACATTTTGTACGTATCTAGGTCATACTTCCATAATACTTTACTTAGACATGAAAAAGCTCCAAGTTAATATTTTTCGACTTGGAGCTGGTTTATTCATAAAATCAGGCACAAGATTACCTTTAACAAAACATCCGCAGCATTGACCCATACCCATCAATTGCCGCCCATTGAGTTGGATTGATACCCACAAGGTGTTTATAAATATAGGTGAAAATTTTACCAGGATCGACAATATCGTTTTTGACTAAGATGCATAGAAAAAGCGCAATCGGCTGTTGATCAATTTTCAACGTGTGCTTTACCTGAGGTTTGATCACAAAGATCTCATATGCTTCCGTAATATCCGCTGTTGCGTGCGGAATCGAAACCCCATTGATAACAAGGCGATTACTCATTTGTTCTCGCGCTAACAAATCATTGACCGCTATGGCACTGATCTGGCCATTTGCTTCCAATTGTTTAAGACCTGTGGCTAAAATGTTGGCGGCATC # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 19628-16346 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDN01000029.1 Loigolactobacillus binensis strain 735-2 scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 19627 32 100.0 34 ................................ CACCAATCACACCAGCAATCAGCCATTGCGGTAT 19561 32 100.0 34 ................................ CCGCAATATCAAATTGTGTATGAGCGCTACGGCT 19495 32 100.0 33 ................................ GATCAATTTTGCAGCGTGGAGTAGGCAATGCCA 19430 32 100.0 33 ................................ ACCAGTTGAATGCAAGACTGCTTGGAATAAATA 19365 32 100.0 34 ................................ CACCAATCACACCAGCAATCAGCCATTGCGGTAT 19299 32 100.0 34 ................................ CCGCAATATCAAATTGTGTATGAGCGCTACGGCT 19233 32 100.0 34 ................................ TGACGCGGCTAGTGATGCTTTAAGCAAAATCACT 19167 32 100.0 33 ................................ TTGGTATGCGTCGTGGCGAAATTATGGGCATCA 19102 32 100.0 34 ................................ TCATAACGACACATTCCACAAATCTGTGATATCT 19036 32 100.0 35 ................................ AAAAACCTACTATATTAATAAGCCAGAGATTGTCC 18969 32 100.0 34 ................................ ATTTGGTGTATACGGAATTGATACCGCAGCTAAT 18903 32 100.0 33 ................................ TTTAAAGCACTAGTGGCTTGAGCCGATGGTTGA 18838 32 100.0 35 ................................ GACTGATAAGTTAGCGCCTAATTCAGCGACCATGC 18771 32 100.0 34 ................................ AAGTGGCACCGGCGATAATTCTGGAACGGGTACA 18705 32 100.0 36 ................................ ATACTCACCAACCCTCGTAATACCACGGCTTAATAA 18637 32 100.0 34 ................................ GCATAACGTCAATCCGTTTGAAACCACTAGCCCG 18571 32 100.0 35 ................................ AGCAATTTTTGCTTGTCCTTGATCATAAAATTACC 18504 32 100.0 35 ................................ TAATGGTTTAAGCAATGCTTGGATGGCCATTACTT 18437 32 100.0 33 ................................ AGTTGGCGGTACCGAAGTCAAGCCGGCTACAAC 18372 32 100.0 34 ................................ ATCATCAGTATTTAATTCAGTCTGTTTTGGCGTG 18306 32 100.0 34 ................................ ATCCAGCCAACGCATGTATGACCAGCTTGTTCGT 18240 32 100.0 34 ................................ ATAGCAGCAACCAATACTTCTACATCAGATTCTA 18174 32 100.0 37 ................................ AAACAAAAAAACAACTGCCAAAGTTGAACGTCCCACG 18105 32 100.0 36 ................................ TATGACAACTTTAGAACGCCGGCGGAAATTATTAGT 18037 32 100.0 34 ................................ CAAGTACGTCTCCAACTCCAAATGAGCCACCGCC 17971 32 100.0 34 ................................ ATTTTAGACTAGATAACTTTGTGGGAACTCTTAC 17905 32 100.0 37 ................................ ACGGATAAAACGCTCATCCATTGCTTATCCCTCGCAA 17836 32 100.0 35 ................................ CGATAAACCAAGATCCATACCGCCGGCGCCGCTAA 17769 32 100.0 33 ................................ ATTTCAGCGATGCTTAAATATTCAATTTTTTGA 17704 32 100.0 34 ................................ CCTTATTCGTTGGGTGCACGTCAGCCAAAACGGC 17638 32 100.0 35 ................................ ATCAATCATGTATGAATATACTTTTGAAGTAATAC 17571 32 100.0 34 ................................ TTTTTCTTCTGTCCATTTCATTTGTAAAAGCCCC 17505 32 100.0 34 ................................ TGACACCACAATGGTCAAGCGTAAGGACGGCACC 17439 32 100.0 35 ................................ GTCAATATTTAAATAGTCGATCTGTAGAGTACGTT 17372 32 100.0 35 ................................ TTTCTCAAGTGATGCAACAGGCGAACATACGTGCC 17305 32 100.0 33 ................................ AGTACCGACTTAAACAATGCGGCGCGGATCAAC 17240 32 100.0 32 ................................ AACGAAGGGTTGGTTTTATTTTTATACTGATA 17176 32 100.0 34 ................................ ACAAACCGGTCATACTGCACACCTGAACTAATGT 17110 32 100.0 35 ................................ CATTTCTGAAACCGGAATACTGATACGGTTTTCTT 17043 32 100.0 35 ................................ TTATCTATTTTTAATATATGTAGTATGTTGCAATT 16976 32 100.0 36 ................................ ACCTCTTGACAAACCAGTTGGCGTTTCAGCTTGCCG 16908 32 100.0 35 ................................ ATGTGTCAATAGCACGCTTTGCTACTAATGACCTA 16841 32 100.0 37 ................................ ATAATTATAGCATATTACATATATTAAAAGTAGATAA 16772 32 100.0 34 ................................ ACCCCTTTGCTAGCAGTGCCACGTAACGCCAGTG 16706 32 100.0 34 ................................ CACTGTCGTTTGCAAACAAGATTGGGAGTTACCA 16640 32 100.0 34 ................................ CCAGTACGCAAAGCGTAGGAATCAGCAATTTGTC 16574 32 100.0 34 ................................ ATGGTCGGCTTTTTTAGCAATGGCCGGCTTTGAG 16508 32 100.0 34 ................................ GCTGATAAGTCAGTTTAGTGTCATTATCGCGTTG 16442 32 100.0 33 ................................ ATCTTCAAAATACTCGTGAAACCAGTCAAAACT 16377 32 93.8 0 ..............................GC | ========== ====== ====== ====== ================================ ===================================== ================== 50 32 99.9 34 GTCGCACTCTTTATGGGTGCGTGAATTGAAAT # Left flank : TGCCATTTAAAGCAATGCGCACTTACACTCCAAGTCGCACTCTTTATGGGTGCGTGAATTGAAATAAAAATAAATAAGTTCAGTCGCTAGCTCCTTCGAGTCGCACTCTTTATGGGTGCGTGAATTGAAATTTTTTCTGCAATAATTGGTGCGGTAGTATGGCTAATGTCGCACTCTTTATGGGTGCGTGAATTGAAATTTGTTCGAGTATAAGGGAGAGTAGACGATGGCTAAAGTCGCACTCTTTATGGGTGCGTGAATTGAAATATCCGACAATGTCTACTTTTAGAAAATAAGGTAACGTCGCACTCTTTATGGGTGCGTGAATTGAAATCACCAATCACACCAGCAATCAGCCATTGCGGTATGTCGCACTCTTTATGGGTGCGTGAATTGAAATCCGCAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGATTGGGACGTTACCAATGTAAAATCGGTTATGGAGTCGCATCTTTACGAGTACCTGAACTCGCTCTTCCATTCAATTTAAAAGTTTACCTTGAAAACGTCATTACAGGTTTTCTATGGTCGATGAATCTCTTAACTTTTCTGACACTAAACTATTGGCATTGCCAAATCTATTCATTAACGATCATGTCACTTCTAATCCGATATTTTCTTACAATTAGTTCGATATCCGATAAGAAAGTTAGACACAAAGGCTTAAACTGTTTGGTATATTTAGTTATAGTTAAAGCCTCGGTATCGGATTTTTGTCCAATACCGAGGCTTCGTTTAATATTGCTATTAATTAGCAACAATAATTTTCATACCAATTCAAATAATTTACAAGCCATCAATTTCACTTAGCTCAATACCTTCAAGTGGCGTGACAACAATTGTATAATCATCAATACTCCGTGGATGCGCAACGCCGGCTTTAGGTGTCACCGTTACTGAATGATGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTATGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 3 20430-19728 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDN01000029.1 Loigolactobacillus binensis strain 735-2 scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20429 32 100.0 33 ................................ AAAGAACACTTAGTTAATGTGATACATTTGCTT 20364 32 100.0 35 ................................ CAAACTGACGCAAGTCAGTTACGTTTGAGCAACGC 20297 32 100.0 36 ................................ CAAACTGACGCAAGTCAGTTACGTTTGAGCAACGCG 20229 32 100.0 36 ................................ ATCTTAATGATTTTGATATTGATAGATACGTAAAAC 20161 32 100.0 35 ................................ ATTGCCATTTAAAGCAATGCGCACTTACACTCCAA 20094 32 100.0 34 ................................ AAAAATAAATAAGTTCAGTCGCTAGCTCCTTCGA 20028 32 100.0 36 ................................ TTTTTCTGCAATAATTGGTGCGGTAGTATGGCTAAT 19960 32 100.0 36 ................................ TTGTTCGAGTATAAGGGAGAGTAGACGATGGCTAAA 19892 32 100.0 35 ................................ ATCCGACAATGTCTACTTTTAGAAAATAAGGTAAC 19825 32 100.0 34 ................................ CACCAATCACACCAGCAATCAGCCATTGCGGTAT 19759 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 35 GTCGCACTCTTTATGGGTGCGTGAATTGAAAT # Left flank : CCTTGGTATGTAATATCTGTCCATCGAATGTCAATAGGTTATCCTGCCATGCTTGCTCAATATGGATCAGGGCCCATTGTCGCTGACAAAAGCGAAAATGTTGAATTCCTGAAATCATCAAAAAATCGTCTTCTCTATATTCCAAGTGCATCATCCCATTAATAATTTTAAAATAACAAAATGCTTAAATCTATACTAGCAATCGCTCAGCGATATGTAAACGCTTTATTTAAAATCAATTTTAACCTGATCAACAATGCCTACACTTGGATATGGCTAGCACAGACTCGATAATAATGATAGAATTTCAGTGATGATACTAATCTGGTAAAAATATCTGTGTAGTGCGAACGAACAGTCCCCATAATTTATCAGGCCGTTTCGCACCTAAATTATGGCTTCTTTTGTAATCTTCTTGCACTTCATTACTTTTTGTTCTCTACCAAATAGTATTATTCACAAGATATAGGGAATAAGTTGCATTTAACCCATATTTTGCG # Right flank : CCGCAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACTCTTTATGGGTGCGTGAATTGAAATCACCAATCACACCAGCAATCAGCCATTGCGGTATGTCGCACTCTTTATGGGTGCGTGAATTGAAATCCGCAATATCAAATTGTGTATGAGCGCTACGGCTGTCGCACTCTTTATGGGTGCGTGAATTGAAATGATCAATTTTGCAGCGTGGAGTAGGCAATGCCAGTCGCACTCTTTATGGGTGCGTGAATTGAAATACCAGTTGAATGCAAGACTGCTTGGAATAAATAGTCGCACTCTTTATGGGTGCGTGAATTGAAATCACCAATCACACCAGCAATCAGCCATTGCGGTATGTCGCACTCTTTATGGGTGCGTGAATTGAAATCCGCAATATCAAATTGTGTATGAGCGCTACGGCTGTCGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTATGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 10999-14200 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDN01000028.1 Loigolactobacillus binensis strain 735-2 scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 10999 36 100.0 31 .................................... CCGAGGGCATTGTATATGCGAATGGGTTTTT 11066 36 100.0 30 .................................... TCATGGTGTTGGTTTGATAACTAGCATATG 11132 36 100.0 30 .................................... TGGGTGGTAAAGGCATGATCGAAGTAGCCG 11198 36 100.0 30 .................................... CCAGCGGGCACAATCAATTAATTTAGATAG 11264 36 100.0 30 .................................... CCTTAGTGCCGGCTATTTTACTGCTCGTAC 11330 36 100.0 30 .................................... ATTGTATTAGAAGTATCTATTAAGCGATTT 11396 36 100.0 30 .................................... TGCTACTAATAAGTCATGTTGCACATTAGC 11462 36 100.0 30 .................................... ATTAGCTTATTGCTGAAATCCTTGCTGTCG 11528 36 100.0 30 .................................... GTGGAACTTGCGGCAATTAAGCGCAGAATG 11594 36 100.0 30 .................................... ACACAAAATGGGCTAAGTATCGTCAGCAAG 11660 36 100.0 30 .................................... CAGCCTCTTTTCCTTTAAGCACCATGTTCT 11726 36 100.0 30 .................................... TGATGATTCCTCTGGTGTTTTAGAAAATGA 11792 36 100.0 30 .................................... GCCTTGTTCGATTTCCGTACGTTGTGCTTG 11858 36 100.0 30 .................................... CTATCAGCGGTTGATGATCAATCCACTTGT 11924 36 100.0 29 .................................... GCAGTAAAACCACTGATTAATTTAGTTAA 11989 36 100.0 30 .................................... ACATTATCAATAACTAAGCCCTTAGGCGTG 12055 36 100.0 30 .................................... ATCGAATTATCTGAGCAGTTAGCGTGGCTG 12121 36 100.0 30 .................................... TCTGAGTAATTGCTGGATCGTCATAGTGAT 12187 36 100.0 30 .................................... GACAATACGTCGCCATCTTTTGGTACCGCG 12253 36 100.0 30 .................................... CAGTTCTTGCTGCTTCCTTTTTAACTCGTC 12319 36 100.0 30 .................................... TGAAACTAATTGCTGCCTTACCAGCTGCGG 12385 36 100.0 30 .................................... CCTGTCACATCACTTGCGGTGACTTTAGCG 12451 36 100.0 30 .................................... AGTGGCATAGTATTGGATGGATGCTACTCC 12517 36 100.0 30 .................................... AACACAGATGTAAGGGCCAAGATTACTTTA 12583 36 100.0 29 .................................... TAGAATCTGTGTTCTTTATCTCTTTAACA 12648 36 100.0 30 .................................... ACCAATCGGTTTACCTTCGGTACCAGCAGC 12714 36 100.0 30 .................................... GGGTCATGCCCCCGATGTTATTCTGGTTGA 12780 36 100.0 30 .................................... TATCAACCAAGACGGTATTGTCAATCAGAC 12846 36 100.0 30 .................................... CCAGCTAATTCGGATAAGCCACCACCACTT 12912 36 100.0 30 .................................... GTCGATGTATCGGCTAGAAAAAAATGGATA 12978 36 100.0 30 .................................... ATAACCGCTGGCACCGTGACCATAGCTCCA 13044 36 100.0 30 .................................... TTTGGTTGTACATATCGCTAAAAGCACCAG 13110 36 100.0 30 .................................... GTCGAGTACATATAATTGCATATTTCGTCC 13176 36 100.0 30 .................................... GAAAATCAAACGGCGATGAATGCCTTAATC 13242 36 100.0 29 .................................... GGTGGTGTCATCCGATTGCGCTCGTTTTG 13307 36 100.0 30 .................................... CTCATCAATTAATTCTTGTTCGCTTTCTTG 13373 36 100.0 30 .................................... GACGATTGCTTGCTTAGCTTGGATCGACAA 13439 36 100.0 30 .................................... GGTCAACCTCTAGCACAACAGGATGCCCCA 13505 36 100.0 30 .................................... GCCCTGTAATTCGGCAATCAACTCATCATT 13571 36 100.0 30 .................................... TAACTCAACATCATCCTTTGGACTACGTGA 13637 36 100.0 30 .................................... GAGCAATTTGCGGATGTTCCAGAAAATCGG 13703 36 100.0 30 .................................... TACGCTATCTTCTTTGCCATTAAAAGAGTA 13769 36 100.0 30 .................................... CATTCCGGGGGACTATGTTAACTATGAGTA 13835 36 100.0 30 .................................... ACCATGAATAATCAACTGTTTATGGATCAG 13901 36 100.0 30 .................................... ATTAAAGTTTCTCCGGTTTGTACTACATAA 13967 36 100.0 30 .................................... ACAAATTATGTGAGTCCGCAGAAGGTCGCT 14033 36 100.0 30 .................................... GGTGTTGCATTGCACCAAACCCAATACCGA 14099 36 100.0 30 .................................... TATGCTTGATAGCATCTTCAATCAACGTTT 14165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 49 36 100.0 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : GGGGAATTTCACTCATTGAGCAATGCAGTTCATAAATTAGTATCGTCATACACAACTTGTTGTCGCAAAAATTCTGCCGCAGGGTTAAAGTTGCCGGAACTTATCCCACTGGTGGCGCATGAGTATGAGTAGTAAGTATATGCGTTTATTAGTGATGTTCGACTTACCAGTCGTAAAAGCAAAAGATCGTCGTGCAGCAGCAAAATTCCGGCAATACTTATTAGGCGAAGGCTACGTGATGATGCAATATTCTGTCTATTATCGTATCGTTAATGGCTATGATATGGCCAAAAAGTATGAGCTACGGCTCGATGATAATTTGCCCGAAAAAGGGTCAGTAAGATTGTTAGTTGTAACTGAGAAACAATTCGACGAAATGCGTCTGTTAGTAGGTGATCCATTGCCTAATGAAGAAAAACTAGACAGTGGGCAGATGACCACTTTTTAGACAGGCAAAAGAGCCCGGTATCTGCGTGATATCAGGCTCTTTTGGTACACTG # Right flank : CTCCGAGATCACAGGTGACTTTAAATCTGTGGATCTATTTTAGCTGAAAACTGAAGGAATCAATTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCTCCGAGATCACAGGTGACTTTAAATCTGTGGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCAGCCAAACTGTTCTGGACATTAGCTGCTAAGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCAGTCTTGTTGGTCTTATCCAAATTGGTTTGGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCATTACTTGCATGCGTGATAACTTTATTTTTGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCCCAATTCTTTTCGGTGAACCAGCAGCATCAGATCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 14364-16907 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDN01000028.1 Loigolactobacillus binensis strain 735-2 scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14364 36 100.0 30 .................................... TCCGAGATCACAGGTGACTTTAAATCTGTG 14430 36 100.0 30 .................................... AGCCAAACTGTTCTGGACATTAGCTGCTAA 14496 36 100.0 30 .................................... AGTCTTGTTGGTCTTATCCAAATTGGTTTG 14562 36 100.0 30 .................................... ATTACTTGCATGCGTGATAACTTTATTTTT 14628 36 100.0 30 .................................... CCAATTCTTTTCGGTGAACCAGCAGCATCA 14694 36 100.0 30 .................................... CGAATCACAGGTGTTAAGTGGGATTGATGA 14760 36 100.0 30 .................................... GCAACGCACCCTAGGAAAATTAAAAGTATT 14826 36 100.0 30 .................................... ATGCAGCCACTGAGTGAAAAGCAGATCAGT 14892 36 100.0 30 .................................... ACGCTGAGTGGCTTCCCAAAAATGAGCACC 14958 36 100.0 30 .................................... TCTGTGCAGCTTCATTAAATACTCCACGAC 15024 36 100.0 30 .................................... GCAGCTCAGGTCGGAGTTAATACAATTACG 15090 36 100.0 30 .................................... GCGATTATCACGGCTGTGGTAGATGATAAA 15156 36 100.0 30 .................................... TCAAGCAAAGGATTGCTTTTTACCCAAGTT 15222 36 100.0 30 .................................... TCCATTTTGCTCACCTTCTTTTTAAACGGA 15288 36 100.0 30 .................................... CTGGTTGGCTGCCAATCATCTTTTAGTTTT 15354 36 100.0 30 .................................... TACCACGCTAACTATGATCCGCAGTCTTCT 15420 36 100.0 30 .................................... TTGTAAATCAGTTAATTCTTTAGCTGTTGT 15486 36 100.0 30 .................................... CAACTAGTATTAGACAATACATAGGTTTCA 15552 36 100.0 30 .................................... TCCGAGATCACAGGTGACTTTAAATCTGTG 15618 36 100.0 30 .................................... GCAATGCGGAACGATCCAATGTTAAAGCAG 15684 36 100.0 30 .................................... ATGACGCTCAAGGAAATACAACTATATATC 15750 36 100.0 30 .................................... GCTGTGATTGGGGCTGCGGTGTCTGTTTTG 15816 36 100.0 30 .................................... TGTCAGCTTGCCTTGCAGCTTACAGTACTG 15882 36 100.0 30 .................................... CGAACCGTTTAAATCATATGCGGTACAAAA 15948 36 100.0 30 .................................... TCGATGTAGCGAGTTTCACATTTGGTATTT 16014 36 100.0 30 .................................... CTCAATGTCAGTGGCGCCGCTTCGGTAGTT 16080 36 100.0 30 .................................... GCCGATCAATGGCAAGGCGGATCCGAAGAG 16146 36 100.0 30 .................................... ACGTTGAGTTGCTTCCCAAAAATGAGCACC 16212 36 100.0 30 .................................... GCTCAGGTTACTCAGGTATCCGATGCAATT 16278 36 100.0 30 .................................... ATTTAGTTGCCATTTGTTTAGCAATAGAAT 16344 36 100.0 30 .................................... CAAAATATAATCAATTTGTGAAAGATCAAT 16410 36 100.0 30 .................................... TTATGCGGTTGGGTTCACAAAGATACAGGA 16476 36 100.0 30 .................................... GTCACTGCTGCATTATATAACAATTTTTAT 16542 36 100.0 30 .................................... TATCTTGTACGAACATTTACTAATCCTGGT 16608 36 100.0 30 .................................... TGAGTAGTTGACGCGGTGGCAACTCGTCCG 16674 36 100.0 30 .................................... GTGTAATTCATAGGCCATTTCCACATTGCT 16740 36 100.0 30 .................................... GTTGTTGTCGCTAGTGAATTAGTTTATTTG 16806 36 100.0 30 .................................... ACATTGTTGTCCATTGATCAGTCATTTCCC 16872 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 39 36 100.0 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : CAATAGCACCATGAATAATCAACTGTTTATGGATCAGGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCATTAAAGTTTCTCCGGTTTGTACTACATAAGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCACAAATTATGTGAGTCCGCAGAAGGTCGCTGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCGGTGTTGCATTGCACCAAACCCAATACCGAGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCTATGCTTGATAGCATCTTCAATCAACGTTTGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCTCCGAGATCACAGGTGACTTTAAATCTGTGGATCTATTTTAGCTGAAAACTGAAGGAATCAATTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAT # Right flank : CGTCAAACTCATCATCGCGCACCGGCAATCGGATCTATTTTAGCTGAAAACTGAAGGAATCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCGTCAAACTCATCATCGCGCACCGGCAATCGGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCGCTAATGGCGCTTTATAATCTTTCACACAAGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCTGCGTGGTTGTGGTGGTGGTCACCTTACCGGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCCACTTGCTGTGGCAGTTGGTGTGGCAGATGGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCCAGCACAGGATGCGGCTTATCAGGAATATTGATCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 17137-21264 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDN01000028.1 Loigolactobacillus binensis strain 735-2 scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17137 36 100.0 30 .................................... GCTAATGGCGCTTTATAATCTTTCACACAA 17203 36 100.0 30 .................................... TGCGTGGTTGTGGTGGTGGTCACCTTACCG 17269 36 100.0 30 .................................... CACTTGCTGTGGCAGTTGGTGTGGCAGATG 17335 36 100.0 30 .................................... CAGCACAGGATGCGGCTTATCAGGAATATT 17401 36 100.0 30 .................................... AGATTTTAGGTGTCCAACATTTTAGGTGCG 17467 36 100.0 30 .................................... CAAGGCAAAAGATGGTACCACACCGACAAA 17533 36 100.0 30 .................................... CAACAAGTCGGGGTATCGAACCCCGTCAAA 17599 36 100.0 30 .................................... CATGGTAGATGATTATTTAGAGAGTGCGCG 17665 36 100.0 30 .................................... TCAAAATGACGAGTTACATTTAACGTGTGC 17731 36 100.0 30 .................................... CGATCCATGATACCTATTTGGAGGGCGCAA 17797 36 100.0 30 .................................... ATGAAAACAGAACTACAAGGATCAGTTGCA 17863 36 100.0 30 .................................... TTTGTTCATGACATCCTTGATCACACTAGC 17929 36 100.0 30 .................................... CGCCGCTTTAGTTGTGAAATGCTTACCCGT 17995 36 100.0 30 .................................... CAGCAAAACGATAACCAGCCCAACTGGCCA 18061 36 100.0 30 .................................... TCCAAACTTAGTTTTATTTGCCAGTAATAA 18127 36 100.0 30 .................................... GTCCCAGTGCTAGTGCCACATTTGCTGCAG 18193 36 100.0 30 .................................... ACAAAATTGTCGTCCTTGTAATCAATATCG 18259 36 100.0 30 .................................... TATCAAAATGATAACCTGAATCAGCTTTAA 18325 36 100.0 30 .................................... GTCAAACTCATCATCGCGCACCGGCAATCG 18391 36 100.0 30 .................................... GCTAATGGCGCTTTATAATCTTTCACACAA 18457 36 100.0 30 .................................... GTTATATAGCAATTCATTTTGCTGAATTAA 18523 36 100.0 30 .................................... CCTTTTCATTGCCACCAGATTCGGTTTGTA 18589 36 100.0 30 .................................... CTTGAATTGATTCTGAATTGACTTTAACGA 18655 36 100.0 30 .................................... GAGCGTAAGTCACAATTACCAGACACAATA 18721 36 100.0 30 .................................... TGACAGTTTGCTAAGGGCGCCAAAGTCTTT 18787 36 100.0 30 .................................... TGATAATTATGTAGTGCAAGCCGGCGAAAC 18853 36 100.0 30 .................................... TCAGTCGGATCGAAAATAACCGTATCGATA 18919 36 100.0 30 .................................... CCAGCGGGCACAATCAGTTAATTTAGATAG 18985 36 100.0 30 .................................... AGTCAGCAATAACATCATCAACCGTCATTA 19051 36 100.0 30 .................................... GTAAAGCCCCCCTTATTTTTCCTTGTTGAA 19117 36 100.0 29 .................................... TTAATTGACATTGTGCTAGTAGCTTTGAA C [19152] 19183 36 100.0 29 .................................... TTAATTGACATTGTGCTAGTAGCTTTGAA C [19218] 19249 36 100.0 30 .................................... TGGCAGTATTCATTTGGTGACTAAAGCTTC 19315 36 100.0 30 .................................... TTTTCCTTTAGGAAACTGAAACCTACTATA 19381 36 100.0 30 .................................... GTAAAGCCCCCCTTATTTTTCCTTGTTGAA 19447 36 100.0 30 .................................... ATTAGCGCTATTCAAGAATATGAAACGATG 19513 36 100.0 30 .................................... GATTTCAAGATTGAGGATCTCAGCAGCCAG 19579 36 100.0 30 .................................... TCAGCTAAGGTGAAAGTGTATTTCCGGTTA 19645 36 100.0 30 .................................... TACGATTCGTGAAGAACAACCATTCATAGA 19711 36 100.0 30 .................................... GTTTAATTGGGAAGCCATTAAGATACCTAC 19777 36 100.0 30 .................................... GTACAACGTTAAGACTGACGCTTTCGCCCA 19843 36 100.0 30 .................................... AAAGTAACATCAGTACAGTTTGCCGGCGGT 19909 36 100.0 30 .................................... TTTAAACCCGCCGCTTCTGTTAAAATATTG 19975 36 100.0 30 .................................... GTTGGCCAGTCAGATTGCTGACTAGGTCAC 20041 36 100.0 30 .................................... TTGCTGCAGCCGTAAAGTCGATACTATTAC 20107 36 100.0 30 .................................... TTTAAAATCAAAGACTAGGGCAGCGTTATT 20173 36 100.0 30 .................................... TTTAGGTGCTCGAAATTATTATCAAGCAAA 20239 36 100.0 30 .................................... CCATTTAGACTAAAGGACAGCCATTCTTCG 20305 36 100.0 30 .................................... GTGCCATGGACACTTATTGTGGTACGGTAG 20371 36 100.0 30 .................................... AAAACAACAAGCAACAATTGCACCGGCGCA 20437 36 100.0 30 .................................... TAGCGATTGATCTTTAATTGCCAAACCTTG 20503 36 100.0 30 .................................... GTTGGCCAGTCAGATTGCTGACTAGGTCAC 20569 36 100.0 30 .................................... TATCTCGCCGCTTTTTAATCTGCAACTTTA 20635 36 100.0 30 .................................... AAAGTAACATCAGTACAGTTTGCCGGCGGT 20701 36 100.0 30 .................................... AGCAGATTGGGCTGAAACCAATGAAACAGA 20767 36 100.0 30 .................................... ACGTGATCGCTTTATGCTGCATCAAGTCAC 20833 36 100.0 30 .................................... TAGCGATTGATCTTTAATTGCCAAACCTTG 20899 36 100.0 30 .................................... TATCTCGCCGCTTTTTAATCTGCAACTTTA 20965 36 100.0 30 .................................... AAAGTAACATCAGTACAGTTTGCCGGCGGT 21031 36 100.0 30 .................................... CCTTGGCCGCTTTAACCGATTTAAAAGCTC 21097 36 100.0 30 .................................... AATTGAACCCATGCATGCTATAATTGTATT 21163 36 88.9 30 ...TC.....G.T....................... CTACGTTGCACCGGATACTGGGCGATTTTT 21229 36 77.8 0 .................GC..A.G........ATCT | ========== ====== ====== ====== ==================================== ============================== ================== 63 36 99.5 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : CAATAGCTGAGTAGTTGACGCGGTGGCAACTCGTCCGGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCGTGTAATTCATAGGCCATTTCCACATTGCTGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCGTTGTTGTCGCTAGTGAATTAGTTTATTTGGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCACATTGTTGTCCATTGATCAGTCATTTCCCGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCGTCAAACTCATCATCGCGCACCGGCAATCGGATCTATTTTAGCTGAAAACTGAAGGAATCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCGATCTATTTTAGCTGAAAACTGAAGGAATCAATAGCGTCAAACTCATCATCGCGCACCGGCAATCG # Right flank : TGGTGGTACTAATCAGGCGTTCAACAGATTATTATATGTTTTATTTCATCTGAAACTAAGATGAACAATGACCGTTGGTTCAGTATTTGATTAACCCATACTTTTATTATTTACTGTATTTTGGAGCTGAACAATCATGTCCTACCAAACAACGCTAAGCACACGTCCATTCATGTACATAGAAACAAAAAAAGTGGCGCAGCGGCTACAAAATGGTCAGTCACCAGACGAAGTACGTTCGGCGGCCAGTGAGCAGAATTTTCTGCAACTGCCTTCGCGTGCACGTCGATTAGCGGCCGTTAATGTTATTTTAAAGCGTCTTGAAATACTAGACGATTATTTGTTGTACCAATTTTTGGCCGCTGATCGTGAAACCAGCAACTTAATTTTATTATACGCCCTGCTGGCTAGTGATCGGCTATTTCAGGAATTTATGCGTCAGGTTTATCTGCCAAAAATTATTGGTATGGAAGCAGGTCTAACCAAGCAAGATGGGCTGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 16117-4332 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDN01000031.1 Loigolactobacillus binensis strain 735-2 scaffold31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16116 36 100.0 30 .................................... GATTAAGAACGCAATGGGCGGTTATTTATT 16050 36 100.0 30 .................................... AGCCTATCGTTGGCCATGCGCGTTAAGGTA 15984 36 100.0 30 .................................... GACATCAAATTCGCCCTTTAAATATCCAAA 15918 36 100.0 30 .................................... ATGCAAAAGACAATTGATACGATGACCCAT 15852 36 100.0 30 .................................... TTCGCGTCTATTTTAATGATGCCACGGGGA 15786 36 100.0 30 .................................... TTTATTAATAAAAGGAAGTGAATTTAATTA 15720 36 100.0 30 .................................... CAAAAAGGCTGTTAGTTTTGTCGACCCTGC 15654 36 100.0 30 .................................... TGGCGTTACTGTCATAACTTTATATCCGTT 15588 36 100.0 30 .................................... TATGTTGCTGTTGAGTACTTACTTGACACC 15522 36 100.0 30 .................................... GCTAATTAATCAGCTACTAGCAGGGAATGA 15456 36 100.0 30 .................................... GTTGACAAGTCGAAGTGCTCATACAAATAC 15390 36 100.0 30 .................................... AAACGAATATACGTGCTTAATAATCCCAGC 15324 36 100.0 30 .................................... TAGTAATCATATAATGGCGATTTGTACTCA 15258 36 100.0 30 .................................... GTTGCCAGATAATGTTGAACCAGTTTTGTT 15192 36 100.0 30 .................................... CATCATCAATCGATGCCATTGTGTCCTCGA 15126 36 100.0 30 .................................... CGTCAGTCACCTCTTCACGATTCAGTTGCT 15060 36 100.0 30 .................................... TGGTACATGATTGCATTGATTACTGCTGGT 14994 36 100.0 30 .................................... ATTGCTTGCATGCGTGATAACTTTATTTTT 14928 36 100.0 30 .................................... AACCATCATGCGCCCAACCACATCGGCTAA 14862 36 100.0 30 .................................... AAAAAAAACGGAGCACACCGAATAGAAACC 14796 36 100.0 30 .................................... CAGTAGTAGCGGTTGCTACTACTGTTTGGA 14730 36 100.0 30 .................................... ACTTGTTTTTTTAAATCCCTCAATATTGTT 14664 36 100.0 30 .................................... ATGAAAGGGTGATTTGAATGACGATCTATT 14598 36 100.0 29 .................................... TTACCAGCAAGTGCCCTTAATGTCCGAGA 14533 36 100.0 30 .................................... GACATTTTTACGGGCAAAGAAGTTTATGTT 14467 36 100.0 30 .................................... TTACCCACATCAGTCCCACCTTTCGTCCTG 14401 36 100.0 30 .................................... TTGCCAATCAAAACACTTTCGCTAGTGCAT 14335 36 100.0 30 .................................... TCTGTCGCATTACTATCCGCTGTTGTTGCG 14269 36 100.0 30 .................................... AACAGATGCTTATTACATTGTTCCTTTATC 14203 36 100.0 30 .................................... CTTAACAAAAGAAGTAATGATTGCCTACCG 14137 36 100.0 30 .................................... AAGATAACCTACGGAGTGATGCAGAGTTTG 14071 36 100.0 30 .................................... TCTCCAATCATCCTTATCATAAGAGTTGCC 14005 36 100.0 30 .................................... GAACAAAGGCAAGCTAAGCAGAACTCCCGT 13939 36 100.0 30 .................................... GTGACTTCCGTCTGCTCGACACCAAGATAA 13873 36 100.0 30 .................................... ACATGGTCTTTAGAGTATTATCAGCAGGCT 13807 36 100.0 31 .................................... CGCTGTTGGTTTGAGTAGCAGCTACTTTTTG 13740 36 100.0 30 .................................... CAACTGCCGCATGGCGTGCACCAATTCTGG 13674 36 100.0 30 .................................... CTTCTCAGTCATGAACACTCGCTCAGTCAT 13608 36 100.0 30 .................................... ACAAATGTATAGGATATTCTTCCTGAACCA 13542 36 100.0 29 .................................... CTTAGTCCATCAATGCAAGATATGATTAT 13477 36 100.0 30 .................................... CTCCTCTGTTGGTTCAGTAATCAACATTAT 13411 36 100.0 30 .................................... CTTAATTTACAACAAGACGGAGTATTGGCA 13345 36 100.0 30 .................................... TTGGAATCTTAAAGTCAGCGGTGCCTCCAA 13279 36 100.0 30 .................................... CTTGGGGACCAGTTGGACCGATATCACCCG 13213 36 100.0 30 .................................... ACCGGCTAATAATTTAACTGACCCACCAGT 13147 36 100.0 30 .................................... GTGGTGCAAGGATAAGAAGCGTCGTGCTAA 13081 36 100.0 30 .................................... CCAACTCAAATGAAGTACTCTGTCCTTTAC 13015 36 100.0 29 .................................... AGTGAAAAGACTAGGCTTACTGAAATCCA 12950 36 100.0 30 .................................... AGCAGCGGAATAATATCAATTGCCACCGAC 12884 36 100.0 30 .................................... CCGACACTACCAACGTTGGGTAAGTGTCCA 12818 36 100.0 30 .................................... GGTGATTGCAAAGTGAAGCCAGTAAAATGC 12752 36 100.0 30 .................................... CAATAATTCCAGTTGCTAAAGTATTTTGCT 12686 36 100.0 30 .................................... ATCAGTTGCGTTAGTCGGATCAACTGTAAT 12620 36 100.0 30 .................................... AATGGGTACCAGGTATAGCTCATTACCTGT 12554 36 100.0 30 .................................... GTCGAGTACATATAATTGCATAAATTTTCC 12488 36 100.0 30 .................................... CTTCCCGCATATCATAAGCAAAGGGATCCG 12422 36 100.0 29 .................................... TGTGAATGAGGTGAGTTGATGACAGATGA 12357 36 100.0 30 .................................... ACGCGGCGGTTCGCTTCGAAAGTTTCTAAT 12291 36 100.0 30 .................................... ATTGCGAGTCCACAAACGTTCCGACTTATC 12225 36 100.0 30 .................................... CGCTGTTTTAAATGTGTCAGTTGATGTACC 12159 36 100.0 30 .................................... CGTCCCCTTATCCACGACCTCATCATGTTT 12093 36 100.0 30 .................................... TTGGTCTTATCTTATTCAATTTGGGACTTT 12027 36 100.0 30 .................................... TTCCTTAACGCCCATAAGCACTTCCCTCAC 11961 36 100.0 30 .................................... ACCTTTAAAATAAATCTTTTTCTTGCCACT 11895 36 100.0 30 .................................... ATACGACAATCGTGAAACTTTAGTTCAGGC 11829 36 100.0 30 .................................... TCATCCAAGGCATAATTCTTTACAGTTTTG 11763 36 100.0 29 .................................... GGAAGGGGGCGTTTGGATGAGTAAATTAA 11698 36 100.0 29 .................................... CGTCCACCCCAACATATGGATCTATCACA 11633 36 100.0 30 .................................... TACTAGTAGCTGTAGTCGCTACACTAGCTG 11567 36 100.0 30 .................................... GTTTAAGCCAAAATGGTACATAGAACAGAT 11501 36 100.0 30 .................................... AATGACCTTGCCATTGGTGGTAGTTCAGAC 11435 36 100.0 30 .................................... GCTGGCTACTTTGCAATCAAGTCAGCTAAG 11369 36 100.0 30 .................................... TATCATAATGGTTTTAACTTTGAATTGACT 11303 36 100.0 30 .................................... GGCGTCAATATGAATTTATGTGATTTGGGT 11237 36 100.0 29 .................................... CTGATCAAGCTATTCAAACGGTCGCCCGC 11172 36 100.0 30 .................................... CAATACGCTAGTAGAGCTAGCGAGATAGCT 11106 36 100.0 30 .................................... GCAGGACATGTCTTTATACGAAAAATTGAA 11040 36 100.0 30 .................................... GTTGGAAGCTTCAACATCTGTGTTCGCCCC 10974 36 100.0 30 .................................... GGCCTGTAATTCGGCAATCAGTTCATCATT 10908 36 100.0 30 .................................... ACGTTCCACTTGCTTATCAGGATTGTTCAC 10842 36 100.0 30 .................................... GGTTTTGTTGGTCTTATCCAAATTGGTTTG 10776 36 100.0 29 .................................... GATGGTGTCCTGCTTGATAACCCTGATAA 10711 36 100.0 30 .................................... TACCTTTTGCCACTGATCTCACCTCCTAAA 10645 36 100.0 30 .................................... GTCCATATCGCTGCCCAATTGATCGCGCCA 10579 36 100.0 30 .................................... CATCTCGCTGATTAAGTCCCCAATAGCAAA 10513 36 100.0 31 .................................... GGTTCAATGGTTGACCAACTGCTAGCAATAA 10446 36 100.0 30 .................................... TGCGGTTACCTGGGTGTCTTTTGAGGGGGG 10380 36 100.0 30 .................................... TTAGGGCTTGCTTAAGAAACTACACCAACG 10314 36 100.0 30 .................................... ACTTGGTCGTTAGTTGATAGATAGTTGCCG 10248 36 100.0 29 .................................... AGGTTTATCTAGGTCAAGCTCAATTGGAA 10183 36 100.0 30 .................................... AGCGCTTGCCTGCAAGCAGGTCTTACGTGC 10117 36 100.0 30 .................................... TCAAAGTAAGCTGCCATCTGCCGAACCATT 10051 36 100.0 30 .................................... AAACATTCTAGGGCATATCAATCGACTAAA 9985 36 100.0 30 .................................... TGACTCAGATGACTATTCAGGCGGGACAAC 9919 36 100.0 30 .................................... GTCGGTGCACCAAAATAAAAAAGACCATCA 9853 36 100.0 31 .................................... TGTCACTGCTGCATTATATAACAATTTTTAT 9786 36 100.0 30 .................................... GAGCTAGCGGGCGACACCTACCAGACTGAA 9720 36 100.0 30 .................................... GGTGACCATGGGGTTGCAATATCGCCCATT 9654 36 100.0 30 .................................... CAGTTCTTGCTGCTTCCTTTTTAACTCGTC 9588 36 100.0 30 .................................... CGCACCCGTAAACCACAGCATGATGATTAG 9522 36 100.0 30 .................................... TTCATTTAACAAACCCCACTGCATTTAGCT 9456 36 100.0 40 .................................... ACGGTTAAACCTGTATAATCTTCAGTTTCTAGCTCATCTG 9380 36 100.0 30 .................................... ACGGTTAAACCAACCACGCTATTAATTTGT 9314 36 100.0 30 .................................... GCGATCGGCTTGCGATAACTTTTCAAGTTT 9248 36 100.0 30 .................................... GTCGTTAGCTAAAAGAAGTCGTGGTCATAA 9182 36 100.0 30 .................................... TGACTGCCTTAATCGGGTTACGGGTATTGG 9116 36 100.0 30 .................................... TCCCAGCTTCGCGCTGTTCGACAAACTGTT 9050 36 100.0 30 .................................... CCGTTTCCAACTTGTATGATTTTTAATCTT 8984 36 100.0 30 .................................... AAACTGCTGCCATATATGACTGATGCCGCC 8918 36 100.0 30 .................................... CGATGCTTTAGCTGGCTGCGGTTCAAAAGC 8852 36 100.0 30 .................................... GCTACTTGTTAAAGCTCACAATGACTCGAG 8786 36 100.0 30 .................................... TGGTTAGTTGCTAACCATAGTTTAAACTCC 8720 36 100.0 30 .................................... ACTGAGCTAAAGGCAGTGGGGTTTGTTAAA 8654 36 100.0 30 .................................... AGTATACGCTGGCAATTATCTGGTGAAATC 8588 36 100.0 30 .................................... CAACTTTTACGACATCACTAAAATCGTCGC 8522 36 100.0 30 .................................... CAATACTAGCGCCAATCATGACGCCGGTTG 8456 36 100.0 30 .................................... AACTGGTATCGTTAGGCGTCACACTACAAT 8390 36 100.0 30 .................................... CCTAAATGGTATTAGCAACACTAATTATAT 8324 36 100.0 30 .................................... GTAATTCAAGTGGGGTATCAAAACTGGCAT 8258 36 100.0 30 .................................... GCGTCTGTCGGTTTGATTACAATGCCCAAT 8192 36 100.0 30 .................................... ATCAACATCGAGAACGATACCGGTCGCCTT 8126 36 100.0 30 .................................... TAGCTTTTGAACCACACCATAGGCGGCACG 8060 36 100.0 30 .................................... TTGTAACAGGTACTTGTCATTTCGTACTGC 7994 36 100.0 30 .................................... GATCAAGAAAAACGCAAATAACCGGATTAG 7928 36 100.0 30 .................................... ATGACGCTAAAGGAAACACAGTTATCTACC 7862 36 100.0 30 .................................... CCAGATGATGATCGTGAGTGGAGCTTGACT 7796 36 100.0 30 .................................... TCGTGAGCATTATTATATTGTTGCCATTGA 7730 36 100.0 30 .................................... ATTAAGCTGTTGCTTGTTACTTCGCTGAAA 7664 36 100.0 30 .................................... GTAATGTAATTGCGATAGCGCCGGTACTGG 7598 36 100.0 30 .................................... CGTACCATCATTGCGCATTTGAAAATTGAT 7532 36 100.0 30 .................................... CCACATCTTTAAAACACTTATATGGGCTTA 7466 36 100.0 30 .................................... TCTAGGGCGGTTTCTAATGCTTCAAGATTA 7400 36 100.0 30 .................................... CTTATCTTTTGCAATATTTAATGCCACTAT 7334 36 100.0 30 .................................... ATTGCAATGTCTGACAAGTTAACCTTCCCG 7268 36 100.0 30 .................................... CTTTGAGAATAAATCCATTGCGCCACCGAT 7202 36 100.0 30 .................................... CGGCCGGCAGTAGGTAAATCAGCATTTGCC 7136 36 100.0 30 .................................... CTTAAGTGTGGTTTTGACGGCGATTTAAAA 7070 36 100.0 30 .................................... TGGTGTTCTGGTCTTATCATAATCAAGGTA 7004 36 100.0 30 .................................... CCCTTGTGCCGGCTATTTTATTGCTCGCGC 6938 36 100.0 30 .................................... TGAGGAACCTGAGCTTACCGAAGACGAGAA 6872 36 100.0 30 .................................... TCTGTTGCTGCGACTGTTGCATTTGTTGCT 6806 36 100.0 30 .................................... TCGATGTAGCGAGTTTTACGTTTGGCATTT 6740 36 100.0 30 .................................... GGTCGGGCACAATTTAAGTACAACGACACC 6674 36 100.0 29 .................................... GCCATTGGCAGGCTTCTTGTCTTTGTTTT 6609 36 100.0 30 .................................... TCTAATGTTGCATATATTAGATTCTCTATT 6543 36 100.0 30 .................................... TTTTGAGACTAAGCTGCTATACCAGCTAGC 6477 36 100.0 29 .................................... GAAATTATGAGTGCAGCCACGTTATGTCC 6412 36 100.0 30 .................................... GTATCGGATTCGATGTCACATGCTACAATC 6346 36 100.0 30 .................................... ATTCAGGTATGACCTATGTTAATGGGTTCG 6280 36 100.0 30 .................................... CACGACTAAGGATTTGAAAGAGAACACTAA 6214 36 100.0 30 .................................... TGCTCATGACTACTTCATAGTCGCCGTCTT 6148 36 100.0 30 .................................... CCATCAGTAGCAGACCCAATTAAAAAGATG 6082 36 100.0 29 .................................... CTCTGGTTGGTAGCGGCTATCAGTTTTAT 6017 36 100.0 30 .................................... TATTGGTAACTTATTAAACCGGTTTGAGAA 5951 36 100.0 30 .................................... ACTAAATCCAGATCCAACTCGGTGACTTGT 5885 36 100.0 30 .................................... TAAGTCAATGTCCTCATCACTCATGCCCAT 5819 36 100.0 30 .................................... CAGCAGCCTATTGTCGTTGACAAAGACGGT 5753 36 100.0 30 .................................... CGCTGTCATCGTTGCTTACAACAAGTTTGC 5687 36 100.0 30 .................................... CGAGTTTGGGCAGCGCCCATGATTTTGATT 5621 36 100.0 30 .................................... TCAAGCTTATAACCATTCAAAAATCGCACA 5555 36 100.0 30 .................................... GCTCAACCTTCACAGGACAGCACGAACCAA 5489 36 100.0 30 .................................... GCCATTTTTATTTCCTCCTTAGCTTGCCTG 5423 36 100.0 30 .................................... TCAGGTAATGCTTTCCGAAGCATGTCTTCA 5357 36 100.0 30 .................................... AAAAGGCCGTTTATTGTACAGCACACTTTG 5291 36 100.0 30 .................................... TCATTGAGCCAAACATTAATTTGTTGATCC 5225 36 100.0 30 .................................... AAGTTTGAGGCTTATCTAAATGAGCAACCA 5159 36 100.0 30 .................................... TCAAAAGTCACGGTGTAGAGTAAGCCGTTT 5093 36 100.0 30 .................................... TTTGAGGACGAAGAAAAGTTCGTTCGCCCA 5027 36 100.0 30 .................................... ATATTTAGCGGTGTCCTTTAAGATTTGGTT 4961 36 100.0 29 .................................... CGCCATAAGTTTCAGTCCAAAACGGATTG 4896 36 100.0 30 .................................... TGTCATTTTAGCAACACTGCCATAAGTCTT 4830 36 100.0 30 .................................... GTTGCTTATGAAGATGACACAATTAAAGTT 4764 36 100.0 30 .................................... GAGTATTTGATACGTATACAGTTCCATTAG 4698 36 100.0 31 .................................... TCTGGCATTGGAGATGACCAAGTTGGGTTAG 4631 36 100.0 30 .................................... AACAACTCGCCATGACTAACACTCCAGTCA 4565 36 100.0 30 .................................... TTACATTTTATATTTGATGGATATTTGGCT 4499 36 100.0 30 .................................... GCTCCAGCTGAAAGCCTTGAACCAAGAATG 4433 36 100.0 30 .................................... CAGATCACACGCAATAGGTGCGTGCTTTTC 4367 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 179 36 100.0 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : TTGGATTCGAGATACATGATTGTTAAATTTACTAAATCTTCTTTGAGCCAGGGAACTTATAATTCATCAAATAGCTAATAGAAGTCAGCAATACTACTGAAAATCAATAACCTACGTCATTAAATGTCAAGTACCACTTTAGGACATTATCTTCGTTCTTCATAGAGTTATATTAATTCCTTGCCGTCTATAGCTAAATAAGATGATATAAATGTTATCGGAAATATTTTTCAATATTAAAAAAACGGATTCAACGCGGCTATACGGCTTATTTTTTTGAAATTAATCTATTCTAGATAAATAGAAAAGAAAAAATTATTTTGTCTTTAAATTAGTCAAAATAGTTTGGACTGATGAATAGTAAATCACAGGATAAAATGTGGATAGGCAATACTTAGGGTTACCAAATGGGGCTAGTAATTTTGATTGGCCGTTGTCTAATTTTAGGGCAAGCAAAAGAGCCCGATATCCGCGTGATACCAGGCTCATTTACTACACTA # Right flank : CAGTCTAGCCAGCCATCTTGTGCGGTCTTGATCTATTTTACTAAAGGTTGAAAGTTAAATAGTTACTCCATACCCAAGTTGAAGTGCAATAGAAAAGTTAGACGATTTATATTTTAAGTTAAGCTGCCATGGCCTGATGCCTGTATTCTGGTTGGGTCCCTGTCAGCCGCACAAGTAAATATTAAAAATTAGGCAGTTTGATTTCTGGGTTCTTCGGGGCGTATATTCCTACCTAGGTAGGAGTATTTTTATGGGCTGAAAATGTTCGCGATATAGTGTGGAAGAAAGGCTCTTCTATATTAAATTGGTGCAAGGCGGGATGTCGGCCAGGGCTATTAGGCAGGAGTACGGTGTGCACGATTCAAAGGTGGCCCAGTGGATTGAACGCTACAATACCGGAGGTGTAGATTCATTACGTGACCGACATCAACAGCACGTCTACTCAAAGGAACTGATACTTGAGGTGGTCCAAGCCTATTTGGCCGGTGGCACATCGTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //