Array 1 7426-6240 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCY01000005.1 Salmonella enterica subsp. enterica serovar Newport strain R8_8631_R1 NODE_44_length_12751_cov_0.805722_ID_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7425 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 7364 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 7303 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 7242 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 7181 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 7120 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 7059 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 6998 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 6937 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 6876 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 6815 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 6754 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 6693 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 6632 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 6571 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 6510 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 6449 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 6388 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 6327 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6267 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 188071-186455 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCY01000034.1 Salmonella enterica subsp. enterica serovar Newport strain R8_8631_R1 NODE_6_length_198575_cov_0.835738_ID_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188070 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 188009 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 187948 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 187887 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 187826 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 187765 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 187704 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 187643 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 187582 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 187521 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 187460 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 187399 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 187338 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 187277 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 187216 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 187155 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 187094 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 187033 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 186972 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 186911 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 186850 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 186789 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 186728 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 186667 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 186606 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 186545 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 186484 29 100.0 0 ............................. | A [186457] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //