Array 1 615536-615149 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMB01000002.1 Citrobacter amalonaticus strain S646 scaffold2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 615535 28 100.0 32 ............................ TAATCTGATGAGGCTTAATCATCTGTTCTTCG 615475 28 100.0 32 ............................ AATGACTGAGGAGCGGAAAAATGGCAACGGAT 615415 28 100.0 32 ............................ TTCGACTTTGCGGATAACGTCGTCTTTGCTGT 615355 28 100.0 32 ............................ AAGACGAACCGTTGCAACTTTTGCAAAATAAC 615295 28 100.0 32 ............................ ATAGCAACAGAATCAGCCTCTAATGCGGCCTG 615235 28 100.0 32 ............................ TCTGTTGCAGTGGACGTATGACGAGGTGGTCG 615175 27 78.6 0 C...........G.......-..G.C.G | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACTTAACCGCTGGCCTGGGCTTAGTCTTCGCGCCGGGAAGCATGTACATCGCTGGGTGCTGTTTGGACCGGAAGGCGCAAAAGCTGACGTTCAGTTCACACCCCGGTTTATTACCACTGACATGCTGGCGCTGCGTGAAGCGGCGGTTGCCGGCGTCGGGGTGGTGCAATTGCCGGTGTTGATGGTAAAGGAGCAACTTGCCGCAGGCGAGCTGGTCGCACTACTGGACGGCTGGGAGCCGGGAAGAGAAGTTATCCATGCGGTATTTCCTTCACGGCGAGGGCTATTGCCCTCTGTGCGCACGCTGGTGGATTTCTTAACGGAAGAATATGCGCGTATGGTGGAGGATTAAAAGAGAAAGTGGGATTAACCCTTTTTTGAATGCATAACTTAACGCATTGATTTTAAAGTGGTTTTATTTTCGGGCTGAAAAAGGGGGTTGTCAGTGAAATTCTGGACTTTTATCGAAAAATCAAAAAGGTAGTCTGTTATTATTTCA # Right flank : TAAAATTTGAGGTACAAAAAAGGCCGGAAGAACCGACCTTTTACTATCTGTACGCCATTCGGGCGTGAAAACAAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATATAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGCACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTTAATAAGTAAAGATTTGTGCGTTTAAAACGCAGCAAATGAAATTTGGCGCATTACTCCGAAATTCTCCAAAAGCACACGGCAAAGCCGCACTTGAAGCGCAACGTATTAAGGGAGCGATGAGATAAACGATGGCGTTACCTGACGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 627964-627094 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMB01000002.1 Citrobacter amalonaticus strain S646 scaffold2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 627963 28 100.0 32 ............................ TGGCTAAAGAAACTGTTTTTCCGGTTCTGAAG 627903 28 100.0 32 ............................ TGTCAGGTTGCGCATATCAGCCTCCGTTCGAG 627843 28 100.0 33 ............................ GCAAAAAGGCGCATTAAAAAAGAATGCTGAATT 627782 28 100.0 32 ............................ CCATGCACGAATCGGCGGCGACCTGAAAACCA 627722 28 100.0 32 ............................ ATAAACCTCATAAACCATTTGCGCGTTTTCAT 627662 28 100.0 32 ............................ AGTAACAGTCAAATCACCATCGATTTCATATT 627602 28 100.0 33 ............................ AGCACCTCGGCTACATCCTTCGCCACAAACCAG 627541 28 100.0 32 ............................ CCTTTAACTAATTAAAAATTAAGATGCTTTGG 627481 28 100.0 32 ............................ TCCGGACAGTTGTGTTTGTGTCCGTTGTACGT 627421 28 100.0 32 ............................ TTTACGACAAGCGCCGCGCAGATGAAGTTATG 627361 28 100.0 32 ............................ GGACGCAGCACGCGGCAAAAAATCGGCTTAAA 627301 28 100.0 32 ............................ AAAAGCGCCTGGCGCTAACCGAGCAGGAAATC 627241 28 100.0 32 ............................ TAAATCGTGGTTTGACTCTCAGTCAGACGAAA 627181 28 100.0 32 ............................ TGGAGGGTGGCGCGGTCTGCTGCGATGATAGC 627121 28 82.1 0 ..G.....................TTTT | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAGCCAGGAAGCGCGTAACTGGCTGGCGGAGAAGGGTTACGATCGGGCAATGGGCGCACGTCCGATGACGCGTGTGATTCAGGACAACCTGAAGAAACCGTTGGCGAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGGCAGGTTACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAGAAGCACAAGCCGGAAACTGCACATTAATTTTTACTCCCGCGCCTGACGTTGAACTTCAGGCATCGTTAAAATCCGTAACCTCTTTTGAGGCTACGGATTTTTTTTTATCCCATGTTCAAAGACTGACGGGCCAGGCGCTCAGTGTCAGCAGCGGATCTGTCAGCGACCCTTTTTTTAAGCCAGATTGTAATTTATTGATTTCTTGAAGAAAAACAGAATGGCGATAAAAAGGGTCAGGCGCATATTTATTGATATTTATCTTTATCGACAACGGTATAGCCATGTAATATTCCA # Right flank : TCCTTCTGGATGATAATGCCTGGGATTGATATTTACGGCATGGATAATTTATTTATTACATTATTCATAAAATAACATTCATATTTCATATGAGCAGAAAGATAAAGTTTGCCAGTTATTGGTTTGTTGATTTTTGTCAATTTCAAAATTAAGTTCGATTCTGTACTATCGTTGCAATCCCGTCTTACTAATTATTATTTGAATAAATATGTCAGCGAATTTAATCACGCCAACGGATCTTAAAACCATTCTGCACTCGAAAAGAGCGAATATTTATTATCTTGAAAAATGTCGAGTGCAGATTAATGGTGGGCGCGTTGAATATGTGACGAGTGCTGGCAATGAATCTTATTATTGGAATATTCCAGTCGCGAATACGACGGCGATTATGTTGGGAATGGGGACTTCCGTTTCTCAGGCCGCAATGCGCGAGTTTGCCCGCGCTGGCGTCATGGTTGGGTTTTGTGGTACGGACGGCACGCCGCTCTATTCGGCCAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 211360-207061 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMB01000003.1 Citrobacter amalonaticus strain S646 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 211359 29 100.0 32 ............................. CATTTGCGCAATTAGTTCCACCGCAGATTGTT 211298 29 100.0 32 ............................. GGTATAGCCGGAACGTACTGCAAAACAAAATA 211237 29 100.0 32 ............................. AACCTTTGACGATTCTCTTAGGTTCCAGCATG 211176 29 100.0 32 ............................. ATGATGAACATGTTCACGGATGACATACTTCC 211115 29 100.0 32 ............................. CGCAGAACTGGTTACATGGTCACGCTGACGTA 211054 29 100.0 32 ............................. ATATCGCAAGAATAACTACCCTTTCCTTCCAA 210993 29 100.0 32 ............................. CGTCTGGTGTTTGTGTTGGTTTTGTTGTCGAC 210932 29 100.0 32 ............................. ATTTAAACATTGTATTATATATTTTAGGGCGC 210871 29 100.0 32 ............................. TTTTCGCAGTATCGCTACCGTTATCCCCAGCA 210810 29 100.0 32 ............................. CGTCATGCGGTGTCGTTGATGTGCGCAACGTG 210749 29 100.0 32 ............................. AAAACGCGCGTAAGCAGCGCGATCTGGCTCAA 210688 29 100.0 32 ............................. GCTGGCACGGGCAGGAACCGGTCCAGACTGGT 210627 29 100.0 32 ............................. TCCATCTGTGACGAATCGCTGTTTCCGACAAT 210566 29 100.0 32 ............................. TTACATTGAATTTGTCCTCTCTCAGAACGACA 210505 29 100.0 32 ............................. CCAGCAACATGATGCGCGATGAACGCATTCAG 210444 29 100.0 32 ............................. CAGTAACTATTGGAACCCATTGACGCGTAACT 210383 29 100.0 32 ............................. AACCTGATTCTGTCTTATATCTATGTCGGGTA 210322 29 100.0 32 ............................. ATTTAAAATTGCTGGGTCGTGGCTGCAATGAC 210261 29 100.0 32 ............................. TTCTTGTTACTGCATATATTTTTGAGGTTCAG 210200 29 100.0 32 ............................. GGTGATTTCCAGATCCGGGCGCACACGGATTT 210139 29 100.0 32 ............................. CGGCTTACAGGCTCAGGAGAGCCGGAACAACA 210078 29 100.0 32 ............................. ACGGTTTCATGTTTCTGGTGATGGGTTTTACC 210017 29 100.0 32 ............................. AATACCCAGCCTACCCTGGGTTGCCCGACACG 209956 29 100.0 32 ............................. AAGGCCGCCAGGTTGAAAGAGGCATACATCGC 209895 29 100.0 32 ............................. TTCATAAAACTCGGTCTGATGACTTCCCACGT 209834 29 100.0 32 ............................. ATGCTGACCGAGCGGGCCGACGCGATGGACGA 209773 29 100.0 32 ............................. CTCACAGAGCCCGTGCGCCAGCGTATAGAAGA 209712 29 100.0 32 ............................. CGCATCCTCTTGACGATCTAACTTTTGGTCTT 209651 29 100.0 32 ............................. CGCATCCTCTTGACGATCTAACTTTTGGTCTT 209590 29 100.0 32 ............................. CGGTATGATGTGATCAACGTCTATTGCTGGTA 209529 29 100.0 32 ............................. ATGATTCGTGCAACTCATAAAACCCCGCTGGG 209468 29 100.0 33 ............................. CCCTTGTTATGCAGATCCATGACGTACTCACTG 209406 29 100.0 32 ............................. GCGAACAACCAACTGGCAGGTATCAGAATGGT 209345 29 100.0 32 ............................. CGATCGAGGCGGGGAAAGAAGTTAAAGGTGCG 209284 29 100.0 32 ............................. TTACTGCAGCAGTTGTGACATACGTCACCTGG 209223 29 100.0 32 ............................. TCTATACTGCTCACTGGTATTCAGTCGGCATG 209162 29 100.0 32 ............................. CCCCTCCATCACGCGGGGCTTTCTTTTGCCTG 209101 29 100.0 32 ............................. CTTTGACGGCACCACCCGTTTCAACGGGGAAA 209040 29 100.0 32 ............................. ATGACGACTGTAACTATCAGGAAAAAGCGGCT 208979 29 100.0 32 ............................. CACCCTCGTTTTTTCTTTGTGACAGGCGTGAA 208918 29 100.0 32 ............................. GCTTCGTCGGGACTACTTAGATCGCGGGATGT 208857 29 100.0 32 ............................. GCTTGTCGATTACTATACGAAAATGTTATCCA 208796 29 100.0 32 ............................. CCCACAGTTAGCTATTTGTCGCGCCCTGGCAT 208735 29 100.0 32 ............................. CCGTCCGGAGAACTCAACATCGAGGGTCTGCC 208674 29 100.0 32 ............................. CGATTGCCGCTCAGGTGGCAGATGAATACCAG 208613 29 100.0 32 ............................. GCAATTGTAACTAGTGGTATTTTTGAAATCCA 208552 29 100.0 32 ............................. ACATATTCATCGTAGTAGCCACATACAACAAC 208491 29 100.0 32 ............................. GCTATATGCGTATTTGCAAAAGCGCAGGTACA 208430 29 100.0 32 ............................. CCGAGCCAGTGCAGCCATGCCTTCGCTACGTG 208369 29 100.0 32 ............................. GGTGTTGTATCTAAAATATCAATGTCGCGTAG 208308 29 100.0 32 ............................. ACTTTATTTTTCAATCCATGATTCGGATGAAA 208247 29 100.0 32 ............................. ATAATATAACTTCATATATTCAAACTAGCGAA 208186 29 96.6 32 ............................T CACACATGGACGCGGGAAAGCAGCGCCAGGAC 208125 29 96.6 32 ............G................ CCCCTTCCCAACCTTGGCGCGGGCAGTCCCAA 208064 29 100.0 32 ............................. TTCGGTGATTTCACACGCACCCGCCCAAATAC 208003 29 96.6 32 A............................ AGCATCGGCATTAGAAATGGCAAGACCTGTAG 207942 29 100.0 32 ............................. CCAGTAAAATCCACAAAAGGCGCACCGAAATC 207881 29 96.6 32 .............T............... CAGAACGCTTCCCCGGGGACGTTCCTAAAAGT 207820 29 100.0 32 ............................. CGCCGGACCTCAGAGAACCGGCGCATGTTTAC 207759 29 100.0 32 ............................. TTTATCTAAACGAGAATCATGAGACATTTTAA 207698 29 100.0 32 ............................. TATCTGCTGTTTGGATTCTGGTCCGTTACCAT 207637 29 100.0 32 ............................. AAATCTCCACCGTTAATATTTCCGTTGTTGGT 207576 29 100.0 32 ............................. TTGTAGAGGAAATCGGGATCACGCTCGTCACG 207515 29 100.0 32 ............................. CTGAATATTCAACGATAACAGCATCAGGAAAT 207454 29 100.0 32 ............................. GGTACGGAACATACTCCGTTGGATAATCATAC 207393 29 96.6 32 .............T............... CCAATCGCGGTAGCAAAAGTCCCGGTTTGAAC 207332 29 100.0 32 ............................. AGAGAGATCGGGCAGCGATTGCAGCAAAAGAG 207271 29 96.6 32 ............T................ CGGGTTTTGAGTCCACGGTATGACCGCAATGA 207210 29 100.0 32 ............................. CGGGCGCTGGTGTGCTATCCGCTGAATATCGT 207149 29 100.0 32 ............................. CCGCGAAAGCGGCTTGAAGGGCGATCTTTAAA 207088 28 89.7 0 ...........A..C..........-... | ========== ====== ====== ====== ============================= ================================= ================== 71 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAAGAAGTGCTGGCTGCCGGGGAGATTGAAATCCCTAAACCTTTTGAAGATGCCCAGCCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGGCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATGTTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCGATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCCTGGCAGACGAAGGTAATGTTGTCATGGCCTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTGGATGGATTAAGGTTAGTGTCATTCCACCCTTCGTAAAATCAATGGGTTATAGTTCTTTAATAATGTGGAAAATTTGGTGAAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : CGAATGAAGTCTTTTAACCAAAATTAAGACGCTTTCTCTGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATAATGCGCACTACGTCGCGGCTGCGGCGCTCAATTCTGTCGGGTAGCGCTTTGTCGATATGCTGCTGGTTATCCAGACGCACGTCGTGCCAGCTGTTCCCTGCGGGGAAGGCGGTGGTCCGGGCAAGCTGCTGATAACCGTCTTTCTTGCCCAGCCCCCAGTTGGTGGCCTCGACGGACAGCACCGAAATCCCGGCTTTATCAAACACCTCTGCGTCGTTACAGCAGCCCGTCCCTTTCGGGTAGTCCTTGTTCAGTCCTGGGTTTGTGCTGGCGGCGATGCCGTGGCTGTGGGCGATTTTCAGCGCCCGGTCACGCGTTAATTTCCGCACCGCTTCCGGCGTATTCTGCCCGCTGTTGAAATAGAGTTTGTCACCCACGATCAGATTATCGAGGTTGATCACCAGCAGCGTGTTTTTCTTCTCTGTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //