Array 1 145942-146701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAT010000005.1 Salmonella enterica subsp. enterica serovar Derby strain SH19MPS19 YZU2029_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145942 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 146003 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 146064 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 146125 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 146186 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 146247 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 146308 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 146369 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 146430 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 146491 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 146552 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 146613 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 146674 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163342-164836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAT010000005.1 Salmonella enterica subsp. enterica serovar Derby strain SH19MPS19 YZU2029_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163342 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 163403 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 163465 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 163526 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 163587 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 163648 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 163709 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 163770 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 163831 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 163892 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 163953 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 164014 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 164075 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 164136 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 164197 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 164258 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 164319 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 164380 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 164441 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 164502 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 164563 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 164624 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 164685 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 164746 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 164807 29 93.1 0 A...........T................ | A [164833] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //