Array 1 73830-72297 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYER01000016.1 Moraxella catarrhalis strain 173P27B1 m173P27B1.contig.15_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73829 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 73769 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 73709 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 73649 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 73589 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 73528 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 73468 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 73407 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 73347 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 73287 28 100.0 32 ............................ ACAATACCGCAGAAGGCATTTCTTTTGATAAA 73227 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 73167 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 73107 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 73047 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 72987 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 72927 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 72867 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 72806 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 72746 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 72686 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 72626 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 72566 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 72505 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 72445 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 72384 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 72324 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TAGAAATTACACTTGTAATCGTCGAAATGCTTCTTGTG # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 284521-284968 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYER01000018.1 Moraxella catarrhalis strain 173P27B1 m173P27B1.contig.17_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 284521 28 100.0 32 ............................ ACTGATCCTCCCAGCGAAACTCAAAGCGAGCC 284581 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 284641 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 284701 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 284761 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 284821 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 284881 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 284941 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTACACTTGTAATCGTCGAAATGCTTCTTGTGTCTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //