Array 1 1179097-1175237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELP010000001.1 Listeria monocytogenes strain CD0292 NODE_1_length_1461588_cov_53.143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1179096 29 100.0 36 ............................. GTTGAATAACCGGAAGCAAGTGGTACGTTTGTCCAT 1179031 29 100.0 35 ............................. TTATCCGAATGTAATTCTTTAATGTTCAAACGATC 1178967 29 100.0 35 ............................. ATCGTTGGGAACCTTATTCACGGGATGATTTTAAC 1178903 29 100.0 35 ............................. TTGAAATACGATCACGACATAATACTTTCGTCATT 1178839 29 100.0 37 ............................. TAAAATATTGGCGAAAACAGGTGACAGCAATAACCGC 1178773 29 100.0 36 ............................. TAGTTATAAAACCAGTAGACTTCTACGGTAGCATTC 1178708 29 100.0 36 ............................. TCCGCCAAGCAAACTATACAAGACTCATTTATCGAC 1178643 29 100.0 37 ............................. AAACTAACTTAGTTTCAGAAACATCCCGCGAAAACTC 1178577 29 100.0 35 ............................. AAAGCAGTCAAGAAGGCAGTAACGGGTAATGGTAA 1178513 29 100.0 36 ............................. CATGTTACCCCACGTAAACCCTTGCAACCATGCCAT 1178448 29 100.0 34 ............................. TTCCCCAAACATTTTATCATTATGACCTTATAGG 1178385 29 100.0 34 ............................. ATGAAAAAAGGTTCGCTAGATATTTCTATGCTAT 1178322 29 100.0 36 ............................. GTCTACAACATCACGTAATAGAAATTGAGTCTTAAC 1178257 29 100.0 38 ............................. CCAGTTAAAGAAGAACCACAACCAGAGCAAGAAAAAGA 1178190 29 100.0 35 ............................. CCGAAAAAGTCGGCAAAGTAAGATTGTTTTTTAAA 1178126 29 100.0 37 ............................. TTGGAAGGTTGCTTTGGTGGTATTTGAAGAGTTTGAC 1178060 29 100.0 34 ............................. TTCAAATTATATGTTACTTTTTACAAGAAATTCC 1177997 29 100.0 38 ............................. GTGAACTCTGTCCCGCCGAAGGGAGCCGTCCAATCGTC 1177930 29 100.0 35 ............................. CTAAAAAGGATTGGCAGAATGGAAATGTGTACGTA 1177866 29 100.0 36 ............................. ACCATTACCACCAAAGTCCCTACACTCAATACTACC 1177801 29 100.0 36 ............................. GAGAACGCCATACCAGTTGAACTAGATCATGTAGTA 1177736 29 100.0 37 ............................. TTGAGACCATCTTGCGAAAAATGGATGCGGCAGGGTA 1177670 29 100.0 35 ............................. TACTCCGTTAATGTTTTAGATGCTTTTTTAACAGC 1177606 29 100.0 36 ............................. ATTTTTTTATTCCAGCTTTTGCGTATCCGGCTTTTT 1177541 29 100.0 35 ............................. TTGTTTAGCTCCGTCAATTGAAAGTCTCGCAATAG 1177477 29 100.0 37 ............................. TTCTCGTAACTCTTGACGATTGCATTTTTTTACTCTC 1177411 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 1177345 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 1177281 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 1177216 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 1177151 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 1177085 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 1177020 29 100.0 35 ............................. TTTATCACTCCTATACTTTTCTTATTTCTGTAAAT 1176956 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 1176892 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 1176827 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1176761 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 1176696 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 1176631 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 1176567 29 100.0 36 ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 1176502 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1176437 29 100.0 37 ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 1176371 29 100.0 36 ............................. TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC 1176306 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 1176240 29 100.0 37 ............................. ATGAATGTATTAGCTACATGGACAACTATGCAACAGT 1176174 29 100.0 35 ............................. TACGATAATACGAGTTTTTCAATAGGCAGACCTCC 1176110 29 100.0 36 ............................. CCGGACAAATCCACTTTCATGGCTAGAGCCGCTTTC 1176045 29 100.0 36 ............................. GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG 1175980 29 100.0 37 ............................. GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC 1175914 29 100.0 36 ............................. AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG 1175849 29 100.0 35 ............................. TTTATTGTCGATAAGCTCATGACAGATGAATCACT 1175785 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 1175720 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 1175653 29 100.0 33 ............................. TAAGGTCATATAAGAAAAAATGTATTTTTTCCC 1175591 29 96.6 34 .......................C..... CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG 1175528 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 1175463 29 100.0 37 ............................. AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC 1175397 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 1175332 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 1175266 29 93.1 0 .......................C....C | A [1175241] ========== ====== ====== ====== ============================= ====================================== ================== 60 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //