Array 1 38363-41198 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJJQ01000037.1 Rothia aeria F0474 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38363 29 100.0 32 ............................. GATGTGGGCTATCCGATTTCGTAGTTCGTTTG 38424 29 100.0 32 ............................. CGGCTAGACCCGTTGGCTAACCTTGTGGCTGG 38485 29 100.0 32 ............................. CTCACCCGCCGTCAAATCGACGGTAAGACACC 38546 29 100.0 32 ............................. CGACGTGGCATGACTACAAAAAGCTACAGCAG 38607 29 100.0 32 ............................. ATTCTCTTCACCCACAATGCTCTTGAGGGTAG 38668 29 100.0 32 ............................. TCTTCGATTGTCATGTACTCGCCATTGTTTTC 38729 29 100.0 32 ............................. CTGAGTGGCAACAGACTTGGGAACAGGTCATG 38790 29 100.0 32 ............................. GCAATGGGCGAGGCAAAAAAATTTTTTTGCCT 38851 29 100.0 32 ............................. TTCGGTGCCCTAGAAACCTCCATGAGGGTAGT 38912 29 100.0 32 ............................. GAAGGCACCCGGGAGGTTCTAGTGTGGGGCAT 38973 29 100.0 32 ............................. TGTTCGTACCGGTCGAGTGTGACAAGGCTGTT 39034 29 100.0 32 ............................. AAAACCTGCAGCCGGTGCGGCACCCCATACGA 39095 29 100.0 32 ............................. GGGTGAATCTCAATCTCGCCGTTCTCACCGGT 39156 29 100.0 33 ............................. TGCCCGTGCCGGTACGGTGCGAGCGCTTTCGCG 39218 29 100.0 32 ............................. GGCGGCGGTGCGGGTGTTATAAGCGCCGCGGC 39279 29 100.0 32 ............................. GTCGGGAACGGTATGCCTTCGCCCGTGGGGAC 39340 29 100.0 32 ............................. ACGCTCGGGCCTGTACTACGCAAAATCGAAGA 39401 29 100.0 32 ............................. ACATAACCGACTCAGCACCTATGCCGCAGTGC 39462 29 100.0 32 ............................. CACCCCCGCCAAATCCCAGAAAGTCGTACAGC 39523 29 100.0 32 ............................. CAATCATCTAGCGAGGCACTGGGGCTGGGCAA 39584 29 100.0 32 ............................. ATAGCACAGACAGCACATTATCTACATTATGG 39645 29 100.0 32 ............................. GGCTTCCGTCCGGGCACCATCCTGGTATCCCC 39706 29 100.0 32 ............................. TGCGAGATTCTGGAGTTCTTCTTCACGCGCAG 39767 29 100.0 32 ............................. AAACTTATCGCCGACTGGGAACTCACCGATGA 39828 29 100.0 32 ............................. TCGAAATAACCGCCCAAGGTTATAGTGCGGCC 39889 29 93.1 32 ..........................T.A TCTGTAATGACGTCATAAAAAACCCGCAGGCC 39950 29 100.0 32 ............................. TAGCGCCCACTTTGTGGTGGAAGCTGGTAAGT 40011 29 100.0 32 ............................. CGGGGCAGCGGCAGCGAAACGGTTATCGTGTA 40072 29 100.0 32 ............................. GATGGCACCGGGGAATTTACCTGTGTAATCCC 40133 29 100.0 32 ............................. GGCGGGGCCGACGGCACTATTATCACCGGCTG 40194 29 100.0 32 ............................. AGAACAGATGATCAGCGGTTGTTCGTTTGCGT 40255 29 100.0 32 ............................. AGCACCACCCTCGACCTCGAATCAATCGGGAT 40316 29 100.0 32 ............................. TGACGGGTAGGGTTCGGGTTGTGGCGCTCTCT 40377 29 100.0 32 ............................. CTCGACATCATCTTCCTGGCCCTCACCCTCTG 40438 29 100.0 32 ............................. GAGTTCCCGAAGCTCTGGTTCATAGCGGCCTC 40499 29 100.0 32 ............................. AGCGAGACGACTACATCCAGGCCCGCGACCGT 40560 29 100.0 32 ............................. TCGCCCGGCTTCGCGTCCTTCTTCACCGTACC 40621 29 100.0 32 ............................. TGACGTAGCAGCTCAAGATTCTTACTCATGTT 40682 29 100.0 32 ............................. GGCATCTGCTACAGGGATCTTAAGCCGGAGAA 40743 29 100.0 32 ............................. GCGATGCCGCGCTTATGTAGTTCCCAGCAGAA 40804 29 100.0 32 ............................. GGCCAGCAGGGCAAGAATGTCACAGGCATGAT 40865 29 100.0 32 ............................. GACGCGATGGTGAAAATCGCAGGCGCCGTATC 40926 29 100.0 32 ............................. CACTCTGCCACTCAGTGGCACAGGCTTACCAT 40987 29 100.0 32 ............................. CTCACCGACTGGATTACCGGCGGCACTGAGCA 41048 29 100.0 32 ............................. GAGCCTTTGGAGCCAACGATGTTGTTCACCAT 41109 29 100.0 32 ............................. CAGAGCATCGCAATCCGCAGGGGCCTGTAGGT 41170 29 96.6 0 .........................A... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.8 32 GTGTTCCCCGCATACGTGGGGATGAGCCC # Left flank : GGAATGAACGCGGTGGGGATCAAAAAAGCGGACATAATTACAGTGATGATGAGGGGGAACTATGATTGTGGTTGTCCTTTCAGCTTGCCCTGTTGGCTTACGCGGGGATTTAACACGCTGGCTTCTTGAAATTAGTGCCGGGGTATTCGTAGGAAAGGTGAGCGCCCGCGTGCGTGAGCACCTGTGGAACCGTATTACTACAACGTGTAGTGATGGTAGCGCGCTTATGGTGTATTCGGCTGATAATGAGCAGCGTCTTGAGTTTAAAGTGCACCGTCATCCGTGGGAGCCTGTCGACTTTGAAGGGGTAAAACTTATGATGCGCCCGTCTGCACCGAAAGAGGACCTTGGGCCACGAAAAGGGTGGAGCAAAGCTAGCAGGTATAGGCGTGCTTCCCGGCGGCGATAAGCTCGAAAATCGTGTAGGGTTAATACTGGCTTTGGGCTCCAAACTAATTCTAAAACTTGGTGTGTGGGGATAAAACCCCATGTCAGCAAGT # Right flank : TTTGGTGGGGAACCTGCAGCGCGGCGGGGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //