Array 1 138211-138838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTE01000009.1 Pseudomonas aeruginosa strain AZPAE14884 AZPAE14884_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 138211 28 100.0 32 ............................ GCAGTCCAGCCGCCGAACTGGACCCCGCCCGA 138271 28 100.0 32 ............................ ACTGGAAGAACTTCACAATACCGGAGACAAGC 138331 28 100.0 32 ............................ GAGAAGACGCAACAGATCAGGGCGTCGATCCG 138391 28 100.0 32 ............................ GAGCAGGTTCAGCCGGCTGTTGCGCCTGGTGC 138451 28 100.0 32 ............................ AGTACCACCGCCCTCCCCTGAGCCGTCACCAC 138511 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 138571 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 138631 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 138691 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 138751 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 138811 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 148571-147704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTE01000009.1 Pseudomonas aeruginosa strain AZPAE14884 AZPAE14884_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 148570 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 148510 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 148450 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 148390 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 148330 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 148270 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 148210 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 148150 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 148090 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 148030 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 147970 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 147909 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 147849 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 147790 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 147731 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 407517-409136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTE01000010.1 Pseudomonas aeruginosa strain AZPAE14884 AZPAE14884_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 407517 30 100.0 36 .............................. GCTGACCGTTGGCGAGGGCTTCAACTTCGAGGGCGT 407583 30 100.0 35 .............................. CGGTCATGTTGCGGAGCGCGGTGAGCACCTGGAGT 407648 30 100.0 38 .............................. TCCGATACAGGGCATGCAGGGAATGGCCCGCGCCAGGT 407716 30 100.0 36 .............................. TACAACCCGCGGGTGTTGCTCATTGCTGTCATTCGT 407782 30 100.0 37 .............................. AGGCCGTAGCGGTCCTGGTAGCTCTGCATCAGCATGT 407849 30 100.0 38 .............................. ATGGCGAACGAGGGTAAGGCCTTCGGCGACCCGGCAGT 407917 30 100.0 37 .............................. CCCTCGTACTGGGTGCGGAGCCAGGTAAGGATGAAGT 407984 30 100.0 35 .............................. GTGGAACTCGGTTTGCCTTGCAGTGATACCGGCGT 408049 30 100.0 36 .............................. AAAGCGGCCTATGAGTACGCCGCCACCAAGCAGGGT 408115 30 100.0 35 .............................. ATGACGCCCTCGACGAGAGCGATGGAGACCGTTGT 408180 30 100.0 36 .............................. CACCGGCTCCCACTTCACTTTAACGCCTGCGTGTGT 408246 30 100.0 36 .............................. TTGCCGCAAGACAAAATGACGGAATTCTCCCGCCGT 408312 30 100.0 37 .............................. GATGAGCCCAATGTGTAGGAGGGTGAATGCCGTACGT 408379 30 100.0 36 .............................. TCCATGGAGCGGCAGATGATCGTCGTGCGGTAGGGT 408445 30 100.0 35 .............................. ACAAGGACGCCCAAAGCATTGTCGAGCATTTTAGT 408510 30 100.0 37 .............................. GCCACTGGTAACCAAGTTGAGGTTCAGGCGAACATGT 408577 30 100.0 36 .............................. CACTACGCCGAGATGGTCCGGCGGTGGGCAAACAGT 408643 30 100.0 36 .............................. TGCACCGAGTTACCGGCCTGCGCGTTCCACGCCAGT 408709 30 100.0 36 .............................. TCTTTGCGGACATAGTTGTAGGCGCCGGCGAGTGGT 408775 30 100.0 37 .............................. GCCACCTGCACCCGCCAGCCCAGCCTGGGCGGCATGT 408842 30 100.0 36 .............................. AACGCGGGCGCGTGGGCGACGGTGGTCATGTGGCGT 408908 30 96.7 36 ..........T................... AACCGTTCCACGGCTGGGGTGCGCCTGGAAATGCGT 408974 30 100.0 36 .............................. CAAAGCTGGACCCTGGCGCGGATCTGCATGTCTCGT 409040 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 409107 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.2 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGTGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGATAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGTGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //