Array 1 110333-107862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTO01000005.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 50264 50264_c5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110332 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 110271 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 110210 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 110149 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 110088 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 110027 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 109966 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 109905 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 109844 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 109783 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 109722 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 109661 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 109600 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 109539 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 109478 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 109417 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 109356 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 109295 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 109234 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 109173 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 109112 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 109051 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 108990 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 108929 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 108868 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 108807 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 108746 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 108684 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 108623 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 108562 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 108501 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 108440 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 108379 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 108318 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 108257 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 108196 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 108135 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 108074 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 108013 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 107952 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 107891 29 100.0 0 ............................. | A [107864] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129937-126878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTO01000005.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 50264 50264_c5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 129936 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 129875 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 129814 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 129753 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 129692 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 129631 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 129570 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 129509 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 129448 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 129387 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 129326 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 129265 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 129204 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 129143 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 129082 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 129021 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 128960 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 128899 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 128838 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 128777 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 128716 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 128655 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 128552 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 128491 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 128430 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 128369 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 128308 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 128247 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 128186 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 128125 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 128064 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 128003 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 127942 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 127881 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 127820 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 127759 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 127698 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 127637 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 127576 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 127515 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 127454 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 127393 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 127332 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 127271 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 127210 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 127149 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 127088 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 127027 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 126966 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 126905 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //