Array 1 259381-259879 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJM01000001.1 Streptococcus cuniculi strain CCUG 65085 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 259381 36 100.0 30 .................................... TCAGACTATCTTAACCAATACACAATGGGC 259447 36 100.0 30 .................................... CACGGTTGAGATACCGAATCCGAACAGAAA 259513 36 100.0 30 .................................... TGCTCAACCTCATAACCATCAAGCCAAGCA 259579 36 100.0 30 .................................... AAAGGACGCTATTGTTACCTTAAAAGAATA 259645 36 100.0 30 .................................... TTTTAACAGATTTGGTATTTTAAATGTATT 259711 36 97.2 30 ..........................G......... CTACGGTTTCTAGCATGTTACAGTTTACCA 259777 36 97.2 29 ..........................G......... GTCGTTCAAGGTATGATGCTGAGCTTTCT 259842 36 80.6 0 .........T......A.....T..C..AGA..... | C,A [259864,259867] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 96.9 30 GTTTTAGAGCTGTGCTGTTTCAACTGATTCCAAAAC # Left flank : GCTGTGCTGTTTCAACTGATTCCAAAACCGGCAAACGCTTCTCTAAGACTTTCAATAAGTTTTAGAGCTGTGATGGTTTAAAATAGGAAATTTTTAACAATTCTACGATAAAACGCTTGCAAAAATTGAGAAAATCTTGTATACTATAGTCATTGGAATTAGCTGAAACAGCACAGCGTGTTAAAATAAGGCTTTGTCCGTATTCAACTTCGCAAGAGGTGGCACCGATTCGGTGCTTTTTTTGTTTCCGCTTTCAGTATACCATATCTACAAAAGGTTCGAAAGACTTATACTGAACTATTTCCAATATCTATAGAAAGTACACTCCTAGAAGAACTGTATTTTAGAACCTCGAAAATGATACAATTTTCCCACATACATTGTTTCTTCACTACTAAAATATGATATAATAAGTTAAGAAAAAAAGGAATCAGTTGGAGCGAGAGTCTAGCTGAGACGAATGGCGCGATTACGAAATCTTGTAGAAAAAATCCTGCGAG # Right flank : CCCAACCAGCTTTTGGAAAAGCTGGTTGGGTTTTTGGAGATTATGAAAAATATTTAGGATTGATAATAGTATATCCTATTCTTAGCTTTCCGACATCGGTCTTAGGGCTGATTTGCTTGCGTACCAAGAAATCTTTTGCAGGCGTGATAGGTTTGCTCCATGAGCATGGTAATGGTCATTGGGCCTACACCTCCGGGAACAGGTGTGATATGGCTGGCGATTTCGTTTACTTCATCAAAGGCCACATCGCCAATCAACTTACCATTCTCATCTCGGTTCATGCCAACATCTATGACTACAGCACCTTCTTTGACAAACTCCTTGGTCACAAAATGTCCACGCCCGATAGCCACCACTAAAATATCCGCTTCTCGAGCAAGAGCTGGTAGGTTCTCTGTCCGCGAATGAGCAATGGTCACCGTCGCATTGGCATCCAGCAACAATTGAGCCATGGGCTTTCCAACAATATTACTACGACCAATCACAACAGCTTTTTTACC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCAACTGATTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCAACTGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 153118-152488 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJM01000003.1 Streptococcus cuniculi strain CCUG 65085 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 153117 36 86.1 30 ..........T......A...AC...A......... TTCTTCTCGCGACCCCCATTTTCTAATAGG 153051 36 100.0 30 .................................... AAGAGATTGATTACTGGGTCAATGTCGCAA 152985 36 100.0 30 .................................... ATCATCTTTTTACTCCAATCTATGTTATAA 152919 36 100.0 30 .................................... TGCTGTAAGACACACCGTCACGCTTTTCTT 152853 36 100.0 30 .................................... TTAGTTGCTTTTCTGCTATGTAGTTGTTCA 152787 36 91.7 30 ..........T..........A....A......... TTTTGCATTATCAAAGATAGATAACCCTAA 152721 36 91.7 30 ..........T..........A....A......... TGCAATACTTTCTGCTTGAATATTCAAAGC 152655 36 91.7 30 ..........T..........A....A......... TCAAAGAATCGGACGTGTGGACGTTATCTG 152589 36 91.7 30 .........TT...............C......... AATGTTTCAGGCTTCAAGGATTTCCAGATT 152523 36 72.2 0 ..........T..A.A....TAC...C......TCA | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 92.5 30 GTTTTAGAGCCGTGCTGTTTCGACTGGTTCCAAAAC # Left flank : TCGTTGAATTGACCATTCATGAGGGACGCAATCATCAGGTCAAAAAGATGTTTGAAGCTGTTGGTTTGCAGGTGGACAAGCTATCTCGGACCCGCTTTGGCAATCTCGACTTGACGGGGCTTCGTCCGGGAGAATCCCGCAAATTGAACAAGAAAGATGTCAGCAAGCTCCATACTCTTGCTGTCACGAAGAAACAGAAAAAATGACGGCTATCTTGATAGGACTGGTACGCTTCTACCAGCGCTTTATCTCGCCCCTTTTCCCGCCTAGTTGCCGCTACCAACCGACCTGCTCAAGCTACATGATTGAGGCGCTACAAAAGCATGGACTAAAAGGCTTTCTCATGGGAATGGCGCGCATCCTGCGCTGTCACCCCTTTGTGCCAGGAGGCAAAGACCCAGTACCAGAACATTTCAGCCTCAAGCGCCAGCAGGCAGATGAATAGGTGCTGTTTCAACTGATTCCAAAACAATCAGAGAGGCGATTGAGAAGTTTGATAA # Right flank : TCATGAGAAAAAATTGAAAAAAATCAGGAATTTTCAACCATATTGCTTGACGCTTCTAACTGCTTGCGTTATAATAGTAACAAGATTTTCATTGATTTAAATCAAACCTGTTGTGATTTAAGTGAATGAAATCATCATTCACCATGCTGTTTGCTGAGCTTGACTCCGGGCAGTGTGGCTATTTTTTTGCATTGAATGTATGACCTGAAAGAGTATGAGGAAAGCTGATGAATATTGAAGAACTATCCTACCAAGAAGTAGAATCTCGCAACCATGTGGTCTTGTTTGAGCCACAGATTCCGCAGAACACGGGCAATATCGCTCGGACCTGTGCAGCAACCAACAGTCCGCTTCATATTATCAAGCCCATGGGCTTTCCCATTGATGATCGCAAGATGAAACGGGCAGGTCTGGATTATTGGGATAAGCTGGATGTGCGCTTCTATGATAGTTTGGAAGAGTTTATGGAGCAGGTAGGCGATGGGAAGGTTCATCTCATT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCCGTGCTGTTTCGACTGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCAACTGATTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //