Array 1 26596-26139 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKP01000042.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal683 sal683_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26595 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 26534 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 26473 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 26412 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 26351 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 26290 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 26229 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 26168 29 100.0 0 ............................. | A [26141] ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGGCCCGTATATGGATTTAACTTTATCAGCGGC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 689-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKP01000021.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal683 sal683_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 688 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 627 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 566 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 505 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 444 29 96.6 32 .............T............... TGCTAACTGGTTCAGGCCAGCAATAACGTTGG 383 29 96.6 32 .............T............... CGCTGCCGGCTTAAATACGTGACGCATAGTAG 322 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 261 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 200 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 139 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : GGCGGCTATGTCGTAACATTCCCGGACATCCCCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10740-8821 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKP01000021.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal683 sal683_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10739 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 10678 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 10617 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 10556 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 10495 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 10434 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 10373 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 10312 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 10251 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 10190 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 10129 29 100.0 32 ............................. CTTAAAAGAGATGTGCTCTCTAATGGGGTTAT 10068 29 100.0 32 ............................. GGTTCAGCGTAGCCCGACCGCTGTAAGCGGTC 10007 29 100.0 32 ............................. CTATTAGCGCGGCTGGCACCCGTGCCGCGCTC 9946 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 9885 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 9824 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 9763 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 9702 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 9641 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 9580 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 9519 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 9458 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 9397 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 9336 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 9275 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 9214 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 9153 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 9092 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 9031 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 8970 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 8909 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 8848 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //