Array 1 136731-135726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWVW010000006.1 Musicola keenii strain A3967 NODE_6_length_291154_cov_57.696431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 136730 29 100.0 32 ............................. CGCTCAGCAGTGCGCTGATCCTCAACATCGGC 136669 29 100.0 32 ............................. GCGCAGGGTGAGGCATTTGCAGCATGGGTCAA 136608 29 100.0 32 ............................. TTGACGCAATGGCGTTTGACTCAGCGGCAGAT 136547 29 100.0 32 ............................. CCATCCCTTTTTTTATTTCTCCATTTGGGAAT 136486 29 100.0 32 ............................. TCGTCATGAATCGCGCTATTGCTTATATTCTT 136425 29 100.0 32 ............................. TCAGTGACGAACAGCTTAACTTTTGGGTTATG 136364 29 100.0 32 ............................. CTGGAGGCGAATTGCAAAAATGCTATTAAGAA 136303 29 100.0 32 ............................. CGGTGCGCCACCAATAAATGATAGCAAATTTA 136242 29 100.0 32 ............................. AAAACTCCCCGGCATATGATGCCGAATCACCG 136181 29 100.0 32 ............................. CACATCCCTATCAATTGTTGAAAATTGAATAT 136120 29 100.0 32 ............................. GCATTTGACGATGGCTGAGTTGATTTACGATA 136059 29 100.0 32 ............................. CATAAGTCGCACCCAGGCCGTCAACGCCCCAC 135998 29 100.0 32 ............................. CATGGTCGGACGTCGGGATGGCAATGGTTTAC 135937 29 100.0 32 ............................. CGCCACAGATAACGCCCTCAATCCATTTGTTT 135876 29 100.0 32 ............................. AACGGCAAAGCGATCCTCAACGTCCAGTTGGT 135815 29 100.0 32 ............................. ACCTCATCACCGCGCTAGTAGCAAAGTCAAAA 135754 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCACACCCGTGGGGATAAACCG # Left flank : CTGTTTTTTGGTCAGCTGTTTGACGCGGTATTCCCACTTCAGCGCGGCGGAACGATCGTCTACAGTGCAGTGATAGACCAGCGCCAATTCTCCTTTTCCCCGTAGCGAACGTGCGCCTTTTCCTGCCTGATGCTGCGCCAACCGGCGTGTGACGTCGGTGGTGATGCCGGTGTAAAGCTGGCCGTCGGTCGTGCGTAAAATATAGAGAAACCATAGAGTTGTCGATGTCGTCACATGAATGCCCGCAGAGTGTGTTATCGGCACTATCTTACGACCCCGACGTCTGAAGAAAAGCGGATTTCCGATGGGCTACGGTAGCCTTGCTGTGGTAGCCGTAATGAGCGGCTCGCTACCGGAGCGTGGTGCGACGGACAATATTCGCGATACCGTATGACAGAAGCTATAGTTATCAAAGCGTTACCGTTCTTTATCATCCTGGAAAAATCGGTGGATTTTTGTGAGTATAAAAATAGATTTGAAAACAATAGGATATATTTAGA # Right flank : AACCGTCTGTGTTCAATTTTCCTTTACCTGGATGCGGGTGTTTCTTATATCCCGACGGCGGTCTTTTCAATGTGATAAAAATAACATTAATAATTCATTTTTGTTATTTTATAATCTATTTATGTGATTATGAGAACATTGCTCGCTGGGGCCGCCAGATAAGCCTTATCTGCAGGCTTCCATTGGGTTTGGCTGAATGGATGGGAGTATTGCTGTATGACTGAATTAACTACCGTAGCGCAGCGTGCGCTGGGGCTGATGGACTTGACCACACTGAATGACGACGACACCGATGAAAAGGTGATCGCCCTGTGTCGTCAGGCTAGCAGCCCGGTGGGAAAAACCGCCGCCGTCTGTATTTATCCGCGTTTTGTGCCGCTGGCGCGTAAAACACTGTGCGAGCAGGGAACGCCGGAGGTGCGTATTGCCACCGTCACTAATTTTCCGCATGGTAATGATGATATCGACGTCGCGCTGGCTGAAACCCGCGCCGCTATTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 126979-128106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWVW010000010.1 Musicola keenii strain A3967 NODE_10_length_143936_cov_59.220203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126979 29 100.0 32 ............................. CTACGAGGCAGAACGAAACGCTGTAATGCTGG 127040 29 100.0 32 ............................. CGCGGCTGATCATGATCTGCTGTTTGATTACT 127101 29 100.0 32 ............................. ATTTGGGACCCAGACGAGGGTGAATATATACA 127162 29 100.0 32 ............................. GGCCGAATACGCCGCTGTCGCGCCCTTGTATG 127223 29 100.0 32 ............................. CAATGTATGGCCCGGCGCGGACAATGCATACT 127284 29 100.0 32 ............................. CAATGTATGGCCCGGCGCGGACAATGCATACT 127345 29 100.0 32 ............................. GCATCGATACCAGTAAATTCGAACCTGCTGGT 127406 29 100.0 32 ............................. CCATGCGTAGCCGCCATATTGCGCTGCATCAT 127467 29 100.0 33 ............................. ACACCGTGCGTCGCCGCCTCAGTTTCCGTCTGG 127529 29 100.0 32 ............................. TCGCACTCTGTCAGCGTGCGGGCTGTGTTTTG 127590 29 100.0 32 ............................. TAGTTGCTCCTCAAAATTCCCGGTTGGGAAAA 127651 29 100.0 32 ............................. TATGCATTGGAACCGTCGGATTTCTTAGATCC 127712 29 100.0 32 ............................. AATCAGCCGGGGACTCCTACCGGGGACAAATC 127773 29 100.0 32 ............................. GACCAACCAACAACGAGTTCTGCGGCCAGTTG 127834 29 100.0 32 ............................. GCGGTTCGGCAGATTCATACATTGTTACGCGC 127895 29 100.0 32 ............................. AGAAAGGCGAACGCGCGCCGGGGTGGTGGCTC 127956 29 100.0 32 ............................. CGCTGCTGTTCACGGTAATGCTCCAGATAGAC 128017 29 100.0 32 ............................. AACAACTTCGGTACTATCCAGCGTGACGGTAG 128078 29 93.1 0 .......T....T................ | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAGGACGTGCTGGCCGCCGGTGAGATTGAGCCGCCGCAGGCACCGCCGGACGCGCAACCACCGGCCATTCCCGAACCGACGCCGTTTGGCGATGCCGGGCACCGGGGGCATGGCGCATGAGCATGTTGGTGGTGGTCACGGAAAATGTACCGCCGCGCTTGCGCGGCCGACTGGCGGTCTGGCTGCTGGAGGTGCGTGCCGGGGTTTATGTGGGCGACACCTCACGGCGGATTCGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAACAAGGCAATGTGGTGATGGCTTGGGCCACCAATACTGAGTCCGGTTTCGAGTTCCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGATCTCGACGGACTGCGATTAGTCTCTTTTCACCCTGTTGAAAATCAATGAGTTAGTGCTCTTTAACAACCGGGAAAAATCGGTGGAATTTTATTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : GCGATTGCAGCTTACTATGTTGCGCAGTTTTTAGTGTTCCCCGTGCCGGTAGAATTCTAAACCCATATTTCATTTATGGGATTAAGGTGTGCCGAATGGTGCTTTGTGCGAGTTGTTAGGTGTTTTTCATAGAGAGTGTGCGCAATGACACGTTTTATCGGTCTGTATTTAGGTCGGGAAATGGCATTATGTGCAGTCCGAGATAATTGAACTGATGCATCGGTCGGTTATGGGTCTACGACGATCCACTGGGGGAATAAGCCGTGGAAGCAGATAATGTCTTGGGAATTATTTCCCGCTATCTGAAGAAGTTGCATGTTTTGACGCTGTGTGTCAGCGACAATAGCGCGTTATGGTGCGCCAACTGTTTTTATGTGTTTGACGAGGCTCAGGTGGCGTTTTTTCTGATGACTGAAATAGAAACGCGCCATGCGAGTATTATGCTGCGTCAGCCGCGTGTGGCCGGTACGGTGAATGGCCAGCCCAAAAGTGTTTTGTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //