Array 1 15371-14119 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYU01000036.1 Lactobacillus sp. UMNPBX16 SNF2W6B1L3_contig_36_65_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15370 29 96.6 32 ............................C AAAAAGACTGGTCGAATTGAGCCGTCTAAAAA 15309 29 96.6 32 ............................C AATAGCTATCTTTTTATCAGAGTTAAGATCTA 15248 29 100.0 33 ............................. CACCTTTCATTTGTTCTGCAGTTACTTGAATTG 15186 29 100.0 33 ............................. AATCAATCTTTTATCATCGGATAAATCTGCTAA 15124 29 100.0 33 ............................. ACGTTGGTATGGTCGCTACATGGAAGACAGCTA 15062 29 96.6 32 ............................C GGTCGAATTCGTGGCATGACTGATGAACTTGA 15001 29 100.0 32 ............................. AGTGACTTGCCATTTGATTAAAAGAAAGAGTG 14940 29 100.0 32 ............................. TAGGTGCCGCACTACTTATGGTTGGTGGTGCT 14879 29 100.0 32 ............................. AATTCATTTTGTGCCTGCTTTCTATCGGCAAA 14818 29 100.0 32 ............................. AATCTGTTGAAGAATAGCAATGCTTTATTTGA 14757 29 100.0 32 ............................. AATATTTTACAAAGATGGGGTTCTGATTGGTG 14696 29 96.6 32 ............................C TAGTACTGCTTTTATAAATAGAAAACTGAATG 14635 29 100.0 32 ............................. AAAAATGTGATTCTTGCTACAGGATCAGCGTG 14574 29 100.0 33 ............................. CACGATTAACAAGGCTATGGGCGATGGTGGGGT 14512 29 100.0 32 ............................. AGTCGTTTGATCAGTAACACCGTCACTGTTGA 14451 29 100.0 32 ............................. ATTGAAGAAACACAAATTGCAGATAAAGCAGA 14390 29 100.0 32 ............................. GCGCCTAAGTTTTGACCACGAAATACGTTGTT 14329 29 96.6 32 ............................C TCATGAGTTTCACCATATCGATTAATTAAGCG 14268 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 14207 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 14146 28 86.2 0 ..............C.......C-...T. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : ACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65044-64159 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYU01000009.1 Lactobacillus sp. UMNPBX16 SNF2W6B1L3_contig_9_55_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65043 29 96.6 32 ............................C AAACGTTTGATTGTTCGGATTTTTTGGGAAAT 64982 29 100.0 33 ............................. TACAGATGACTATGATTTGCTCAAAGCCGGTGG 64920 29 100.0 32 ............................. CAGCAAGATCACCAGAAATATGTCTAAGTTCA 64859 29 100.0 32 ............................. ACGATGGGGACATTATCATTTATAAATTAACA 64798 29 100.0 32 ............................. ACAGCGATGAAAAAGCCGAGAACGTGATTCTG 64737 29 100.0 32 ............................. TAATGTTTATTGGACATTACATTAATAATTGT 64676 29 100.0 33 ............................. AACTACTATTTTGCGTTTGATAACCCGAAGTTA 64614 29 96.6 33 ..T.......................... ATAACCACAAGTCGTGCATCTGCAGTAGGGATG 64552 29 100.0 32 ............................. GGTTACGTGCTTAACGATGGCACTGTAATTAC 64491 29 96.6 32 ............................C CCTTGAACTTGTTTCCATTGTTCAAAAGTATA 64430 29 100.0 32 ............................. GATCTAAGCATTTTTCTAATTTCTTAACAATA 64369 29 96.6 32 ............................C CATCACAAAACATAGTGAAGCAGTTACACCCA 64308 29 96.6 32 .............A............... GTTTCCACATACCTTGCATTCAGCTGATTTAA 64247 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 64186 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGCACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89437-87758 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYU01000009.1 Lactobacillus sp. UMNPBX16 SNF2W6B1L3_contig_9_55_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89436 29 96.6 32 ............................C ATACGGGATTCCTCTTTTCCATTTATCTTTAG 89375 29 96.6 32 ............................G TAAAACCACGTGCGCCAGATAAGCCAGCTATT 89314 29 96.6 32 ............................C TAGACGTTTCTTGCATAGATCTAAAAAATCGT 89253 29 100.0 32 ............................. TAACAGGTGGTGCGTCTTATTTTTGGAAAGAA 89192 29 100.0 32 ............................. AAAATAGACGTTAACCTAGTCCCAAACATTTG 89131 29 100.0 32 ............................. AAGACAGTTATCACAAAAGCATCTTCTTATTA 89070 29 100.0 32 ............................. ATTTTGGGATTTAGCTTTACATTTTCCATATA 89009 29 100.0 32 ............................. CTTCGCCAGCATAAACGTTTAATCCTAGTCCG 88948 29 96.6 32 ............................C ATAGCGCCTTACTCGACCAGTATTGGTCAAAG 88887 29 100.0 33 ............................. CACTCATTTTTTGTTGTTGATAAATCATGAGTA 88825 29 96.6 32 ............................C TTTCTGAGTTCCACAGTGTCGTAATTATCATA 88764 29 100.0 32 ............................. GTCCTAAGCCGTTTGCTCTGGTGTCTTCTGCA 88703 29 96.6 32 ............................C ATCTGGGTCGATTCAATCGGCTTAGTAGCAGG 88642 29 100.0 32 ............................. GTTGGTGCTGTTCGTGCTGGTAAAACTTACAT 88581 29 100.0 32 ............................. ATCCGTCATGACAAGCTTATGGAAGAAATAGT 88520 29 96.6 32 ............................C ACGCCAAAGCAACAAGAGCAACCAACGCAACA 88459 29 100.0 32 ............................. TTGGGTGCTATTAATGTAAACCCAGAAAATAG 88398 29 96.6 32 ............................C ATAACGCCTTACTCGACCAGTATTGGTCAAAG 88337 29 96.6 32 ............................C CACTTTGACCTTTAGAAAGCCCTGCGGCTAAC 88276 29 96.6 32 ............................C ATACATTGCGTTGGCTCTATGAATGTCTCCAA 88215 29 96.6 32 ............................C CACAACCAGTCCAACCAGAAACTAAAAAATTT 88154 29 100.0 32 ............................. CAGCACTTAGTAGTATTATCTGACTTTGCAAG 88093 29 100.0 32 ............................. GTCCCAGCACTTAATTTTAATCAAACACTTAC 88032 29 100.0 32 ............................. ATTTATTTATGGGATTAATTTAAAGAATTGTT 87971 29 100.0 33 ............................. ATCTTTCTTTTGTTTTTTAGTTACGTGTGTGTA 87909 29 93.1 32 ...........AC................ TGTTGCCAAGCAAACGTCAGCAGATTTTCAAT 87848 29 89.7 32 ...........AC...............C AATCTAGTTTATGATACAATAAACACAGATAT 87787 29 82.8 0 ...........AC....T......T.A.. | A [87766] ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTGTCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGTAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATTAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTAAACATTGGGAACA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 92558-92164 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYU01000009.1 Lactobacillus sp. UMNPBX16 SNF2W6B1L3_contig_9_55_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 92557 28 89.3 33 ............TA.........C.... CAGTTTAGGTACCATTTTTTGACGATCAAAATC 92496 28 100.0 34 ............................ TGACAAGGTTGACCAAGCCGTTAAGACCATGCAA 92434 28 100.0 33 ............................ TTAAAATAATTAAGGAGGGAACTCCAAATATCG 92373 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 92312 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 92251 28 89.3 32 ...........ACA.............. TCCGACGGGGTACCCCGCGGCTGTCCATCATC 92191 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 7 28 91.3 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGCCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGCGATGCTGATATATTGTGGATCATTTA # Right flank : AGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAATAAAAAACCACAAATCAAAGTTTACTTCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : GTATTCTCCACACATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //