Array 1 367947-369235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001581.1 Pasteurella multocida subsp. gallicida P1059 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 367947 28 100.0 32 ............................ ATTCGAGCGGATACCGATTTTTTGATGAAAAT 368007 28 100.0 32 ............................ TTTATATCGGTAGGTAAGTCTGATCGGATATT 368067 28 100.0 32 ............................ ACAATTTGATATGAATGGTAATGTTTATTATT 368127 28 100.0 32 ............................ TTTTAATCGTTCCACAGTTGAAGTTAAGCCTT 368187 28 100.0 32 ............................ AAAAGCAGTGCGCGATTCTTACTATCGTAACG 368247 28 100.0 32 ............................ GTGAGTTCATAAAGGTGTGAATTAAGGGATTT 368307 28 100.0 32 ............................ AATATGTTTAAAAGCGATAGTTTGGCGAGTGA 368367 28 100.0 32 ............................ TTAGACAAAAAGCTGTTGCATTTGAAGCCAAA 368427 28 100.0 32 ............................ ATATATCTGCGTGGGTAAATGTTCCAATAATT 368487 28 100.0 32 ............................ ATTTGAAGATTTTTTGACTTTTTCACCGTCTT 368547 28 100.0 32 ............................ AGAAATACGCCACGTTTTTGATAAAATTTGAG 368607 28 100.0 32 ............................ AAAAGTGATTTGCACGCAGGATTTAGAAGTTG 368667 28 100.0 32 ............................ AAATTATGAAAAATCAATATTTAGCACTAGCT 368727 28 100.0 32 ............................ ATTTTCTACTTAGCTCCCTGTCGTATTCGTCT 368787 28 100.0 32 ............................ AAGGGGCGCACCCCTTGACCCCTTTAAACCGA 368847 28 100.0 32 ............................ ACGAACGACGACATAAGCGCATAGTAAACCCC 368907 28 100.0 32 ............................ AACTTTTGTGCAACTTCAGGCTTTAACTTAAT 368967 28 96.4 33 ....G....................... AAGTTGATAATTCATCCAATGTCATTTGTTCAA 369028 28 100.0 32 ............................ GAAGGTCAATAATCTAAAAGGGTCTATTCAAG 369088 28 100.0 32 ............................ AGTTCGTGAGTGCACTCTCGATGTTGTCGATA 369148 28 100.0 32 ............................ AGATTTGTCTATGAGTTCGACTTCGATAATGA 369208 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACTGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGACGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2146974-2149882 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001581.1 Pasteurella multocida subsp. gallicida P1059 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2146974 28 100.0 32 ............................ TTGATACTGCCTAAATCATTTTTCCACGATTT 2147034 28 100.0 32 ............................ TTATGAATTATGGCTACAAACACAAACCACAA 2147094 28 100.0 32 ............................ TTTAACGATTCCATATTTTTTATTAATTTTAA 2147154 28 100.0 32 ............................ ATATTAATGAAATCACTAGTCGTAGTATCATT 2147214 28 100.0 32 ............................ TGTACTCCAAGTCCATTTATTATCTTTAATGT 2147274 28 100.0 32 ............................ AGTTTCGCGATTAGTAAAAGTACTAACTTTTT 2147334 28 100.0 32 ............................ TTGTACCTGCTTATCGAGGCGTGACTTCATTA 2147394 28 100.0 32 ............................ ACTTGTGCTCACAATGACCGTAAATTTCAGCA 2147454 28 100.0 32 ............................ ACATGGGTGCTTTTTGTTTTTGGTAATTATCT 2147514 28 100.0 32 ............................ CGAATCACTGTGCCGAAATTGCACAAAGCGGA 2147574 28 100.0 32 ............................ AAAATGAGAAAACCATTCGTTTTCTGCGAGAA 2147634 28 100.0 32 ............................ TGTCGGCGATACTGCAATTGCGAGTTGTGAAA 2147694 28 100.0 32 ............................ AAAAAACAAATTTTGTCACAAAATGAATATAT 2147754 28 100.0 32 ............................ ACGTTCCAATAAGGTATGTTCTTCTTTCAAAT 2147814 28 100.0 32 ............................ TTCACACCAATTCGGCATACTCTTTCTCCAAT 2147874 28 100.0 32 ............................ GTAGTTTTATTGCTGAACATCGTCATTTTACA 2147934 28 100.0 32 ............................ TGCATTATACATTCCAACAGAAATCCATTTAG 2147994 28 100.0 32 ............................ CGAGCGTGCAGTTGGCGTTAGACGGCAAGCCG 2148054 28 100.0 32 ............................ ACGAGTTTGTGCAATGATTTTAAGCATTGGCG 2148114 28 100.0 32 ............................ AGTTGAAGTATCAGAAATTTTAATAAAGCAAT 2148174 28 100.0 32 ............................ CGTGTAATAAGTTACAAATTCACCGTTTATAA 2148234 28 100.0 32 ............................ TGATGTTAGAGATGGCTATGTAGGTTTTCAAA 2148294 28 100.0 33 ............................ CCAAAAACTATAATTTTCTTCAAATTCCTTATC 2148355 28 100.0 32 ............................ TGGTTCTTTTGGTTGAGTTTTTTATCGGCTAC 2148415 28 100.0 32 ............................ TCAATCTAGCGACAATATGAAATCACGCCATT 2148475 28 100.0 32 ............................ TAACATGCCTCGCACTTATGCAAGAGTTAGTT 2148535 28 100.0 33 ............................ CAACAAAAAGCCAGTCATGGATGCCAAAGCTAT 2148596 28 100.0 32 ............................ TTATAGATTAATGCGTAAATCTCACCATCAAT 2148656 28 100.0 32 ............................ GAAAGCGAAAACGCAAGGCGAAAGCGCGCCAG 2148716 28 100.0 32 ............................ ACATTGTTTTTATCTTGCCACTTTCTTGTTCT 2148776 28 100.0 32 ............................ CGCGTAAAGTGGGATTTTTATTTTGAGAGAAG 2148836 28 100.0 32 ............................ TATACTCACCCATTACTTTTTCAAAATAACGC 2148896 28 100.0 32 ............................ ATTGGAATACGCAGTGTATTCTAACTCTACTG 2148956 28 100.0 32 ............................ TTAATTTGCCGTTTTATCTCAAAATTATGAAA 2149016 28 100.0 32 ............................ ACTATTGAAGCTACCTATGAACATCATCCAGT 2149076 28 100.0 32 ............................ TACAGCGTCATAGTGCTTAACTTTATTTAATT 2149136 28 100.0 32 ............................ TAGTGAACTCAAATCAATCTCACCAGTAATAT 2149196 28 100.0 32 ............................ GTTTTTCCTTATGACAAAAACGGTATTCCACT 2149256 28 100.0 32 ............................ GGTCGTAGCAGAATACGCGGGGACAGCTTACA 2149316 28 100.0 32 ............................ TGTTAATCTACAATCAGTTGTAAAATTATTTT 2149376 28 100.0 32 ............................ GACATTAATGTCGGAGACATCATTTAACAGAT 2149436 28 100.0 32 ............................ ACAGTTCACGCACGCGAATGTTACACAACCGC 2149496 28 100.0 32 ............................ GACAGGCACAATGCACGCATTTTTAGCACAAA 2149556 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 2149616 28 100.0 32 ............................ CGAGTAAGTGTGAATCCACGCCATTTATTTTT 2149676 28 100.0 32 ............................ ACATTTGGTCCAAGGTGGTGATAATTCTTGGC 2149736 28 96.4 32 ............G............... TCCAGAGTGTTACAAAACGGCGGAACAGTTAT 2149796 28 100.0 32 ............................ AGATGACTTATGTGTCTGATCGCTCCGAAGAA 2149856 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGTAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTT # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAGGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //