Array 1 390-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCQ01000016.1 Corynebacterium jeikeium strain Cj37130 121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 389 29 100.0 32 ............................. TCTGAAAGCGGGTCTAGGTGGGTAGGGGCAGG 328 29 96.6 32 ............................T GCCTGGAATGGCATGACCTCCGGCATTAAGCA 267 29 100.0 32 ............................. AAAGAACTCGACATTTTCTTCGATCTCACCAA 206 29 100.0 32 ............................. ATACATGCCCTTCCGTTAAAGCTGTACCACAG 145 29 96.6 32 ............................T GAGTACCGCGAGAAGGAAGATCGTGTCACTGA 84 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Left flank : TATTGATGCTGAGCTGGTGTTGTGGTCGGACTTGGAGGTCGTGGCTTCCAAGCGCAATTGGTCAGACGATGGGCCAATCAGATGATGGTCTTAGTTGTATCTACGTGCCCCGCGGGTCTTCGCGGTGACCTCACGCGCTGGTTGCTGGAGATTTCCCCGGGTGTGTTCGTGGGCCGCCCCAGCGCTCGGGTGCGCGACCAGGTGTGGGAGCGAACATGCGACCTGGTGAATGATGGCCGAGCAATCATGGTGTTCCAGGCAGCAAACGAGCAAGGCTTTGATTTCAAGACTCACCGGCATGACTGGGTTCCAACTGATTTCGATGGAGTGAACCTAATTACGCGGCCCAATAACCGGGCGCCTTCGGCGAGGCGACGCGGATGGAGTAAAGCCAGGCGGAGGTAAAGCGTTGGTGATCGTTCGCTAGTCCGGTAGGCGGTGGGGAAAACAAGTTGAAGTAGAATTGGCCTAACGGCTCAAAGAACCACAGCTCAGAGAGA # Right flank : GCTGGCGAAGTTCGCTAGGGATTCTGAGGCGGCGTGCTCCCCGCGCCAGCGGGGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3335-2023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCQ01000009.1 Corynebacterium jeikeium strain Cj37130 114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3334 29 96.6 32 ............................C GGCATTAAGAGCGTTGTCACGGCAGCATGGAA 3273 29 100.0 32 ............................. AAGAGCGTAGCCAACAAACCGGGAAAGCCTGT 3212 29 100.0 32 ............................. TACCAGTCCGGTGTTGTGGAGATCAAGGTCTC 3151 29 100.0 32 ............................. TTCATCATTGATCACTGGGAGCAGATCAAGGG 3090 29 100.0 32 ............................. TTCGAAGGGTCTTCTCCTAGGTCTATGGCTAT 3029 29 96.6 32 ............................C GTGTCGGTGACTCCCGAGACGTTGCCCATGCT 2968 29 100.0 32 ............................. TGCAAGCCCTGGCACCGGCAGGAAGGAGAAAA 2907 29 100.0 32 ............................. GACTACGTGCTACTGGACGCGGCTGACCACGC 2846 29 100.0 32 ............................. TCTCCTACGGTGCGCAGTGCAAGCACGTCGAA 2785 29 100.0 32 ............................. GAAGAATTGTCGGATATCGAGTGGGAACCGGA 2724 29 96.6 32 ...........A................. AACAAGGGCGTCGAAGTGCCGTTCAAGTTCGT 2663 29 96.6 32 ............................T TGCTGTTTGACTGTGCGCATGTCCGCTTGCAG 2602 29 96.6 32 ............................T TGGTGTTTGACTGTGCGCATGTCCGCTTGCAG 2541 29 100.0 32 ............................. AAAAACCAACCACCACCCAATCCCAGGAAGCG 2480 29 96.6 32 ............................C TTCATCCTCGGTCTGGCCGGTTCTGTCTGGAA 2419 29 93.1 32 ......................A.....C GGGACTTCAGTTCCGGCGTGCTTCCAAGACCA 2358 29 96.6 32 ............................C GGGACTTCAGTTCCGGCGTGCTTCCAAGACCA 2297 29 96.6 32 ............................C TGGTCTAGCTCGGTGAAATGAATGCGATAGGT 2236 29 96.6 32 ............................C CCGTACCCATTCTCGATACCATCAACCCACCG 2175 29 89.7 32 ......T.................C...T CGGATCCTAAGAATTTTCCGGGCACGGGTTGA 2114 29 93.1 32 ......................C.....C GACGACACCGCACGCCGAGACGCAGCCTCCGT 2053 29 86.2 0 ........................CTTA. | CG [2027] ========== ====== ====== ====== ============================= ================================ ================== 22 29 96.9 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Left flank : CCCCGCGCCAGCGGGGATGAGCCGCTGGCGAAGTTCGCTAGGGATTCTGAGGCGG # Right flank : GCCCGTTCTAGCGACAATCTGGACGGCTCGCTGCAGGGGATCTACTTAACCGGAACCTCTTTTCGCAGGAATGCCAGCTGCTCCTCAATGATCTCCGGGAACAGCGGCTCCACGTAGGGGTCGAAGTGGCCGCCCTCGTGAATGTGAATCGTAGCGCGCTGGACCTTGCCAGCGGCTTTGAGGGCGACATTCGTTGGAGTGACGGCGTCATTAGACATCACCTGGAAAAGCGCCGGGCAGGAAACATTCCCCGACGTCCGCGCCGGCGAATAGAAACCAATCAACGCCAGAATGCTGTTCGACGTGGCCGGTGCACCAACTCACGCGCCTATTCCTCCGCATCTATAGGTAGGGGAAATAGGCTCTGACGTGCCGTTTTCTGTGGGGCCAGCGGGGCTCGAACCCGCGACCAGCGGATTATGAGTCCGCGGCTCTAACCGACTGAGCTATAGCCCCAGTATGCGTCACCGCTCGATGGAGCGGCTTGCTAACAAAAGATT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //