Array 1 669134-670319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010283.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21550 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 669134 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 669195 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 669256 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 669317 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 669378 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 669439 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 669500 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 669561 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 669622 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 669683 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 669744 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 669805 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 669866 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 669927 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 669988 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 670049 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 670110 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 670171 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 670232 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 670292 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 686989-688604 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010283.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 21550 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 686989 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 687050 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 687111 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 687172 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 687233 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 687294 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 687355 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 687416 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 687477 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 687538 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 687599 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 687660 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 687721 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 687782 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 687843 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 687904 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 687965 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 688026 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 688087 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 688148 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 688209 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 688270 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 688331 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 688392 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 688453 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 688514 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 688575 29 100.0 0 ............................. | A [688602] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //