Array 1 86062-87483 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000012.1 Calothrix desertica PCC 7102 sequence012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 86062 35 100.0 36 ................................... TTATAGCTTCAATGGAGCTTCGTCATGCCAAACAAA 86133 35 100.0 38 ................................... TGTTTTCATAGTTTTTTGGTGCTATGCACTAATTTGAT 86206 35 100.0 35 ................................... TCGTTTTCATGGATTTTTTCCAGTAAACTATAAAT 86276 35 100.0 38 ................................... AATGATAAGTTTCTTCATTAGAAACTCCTAAATAATGA 86349 35 100.0 36 ................................... TTTTAGGCCTGCACAACAAAGGGGCAGGAGATAAAG 86420 35 100.0 38 ................................... ATGTTTGACTCCAGAATGTAAATTATGCAAAGAAATTG 86493 35 100.0 38 ................................... ACAATGATAAGTTTCTTCATGAGAAACTCCTAAACAAT 86566 35 100.0 44 ................................... TGTATTCATGCTTAGATTGTTCTCTAAAGAACAATTGTTCGGTT 86645 35 100.0 37 ................................... TTTCATAGTTTTATTGCGTTCATTTAACGCAAAAGAA 86717 35 100.0 42 ................................... TTGATGGAAGAAGCAGCCTTTCTAGTGATAGTAGCCATAATG 86794 35 100.0 36 ................................... TTTACAAACCACTTCATAAAATGACCTCAAAAAAAG 86865 35 100.0 36 ................................... TGTTGTACTCAAGGCGTAGATTTTCTAAATCGCGAA 86936 35 100.0 40 ................................... TTTGTAAGCATGTTGCCTCCTTGGGCATAAAGTAAAAACA 87011 35 100.0 37 ................................... AAGAGTGGGAATCAAAAGCAACAATACTTTTTTCATT 87083 35 100.0 41 ................................... ATTACTCAGCTTTTACTCACAATTTGACTTATAGTGAGCAA 87159 35 100.0 38 ................................... AATCTTGCGCTTCTTGGTTCATAAAAAAAATCTCAACT 87232 35 100.0 36 ................................... TTCGCGTACATAATTTTTCCTCCTGGAAAAATATCG 87303 35 100.0 36 ................................... AGAGTGGGTAGTTATCTTGGATAACTTTAATAAAGA 87374 35 100.0 40 ................................... AGTCGTAGGTCTTTCATAATGAAGCCATAATAAAGGAATA 87449 35 97.1 0 ..............................A.... | ========== ====== ====== ====== =================================== ============================================ ================== 20 35 99.9 38 GTTCGGCTTATTTAATAAGTCGCTTGATTGGAAAC # Left flank : CAAGATTTTTACACCAGAGGAATTTACACCACCTGATGAAAAAGGAGGAGTGTATCTCCAGCCTCACTCAATCAAAAAATTTCTCAAACACTGGGAAGAAAAGCTACAATCGGAGATAACACATCCCCATACAGGGTATCAAGTAAATTTCCGACGATGTATAGAATTACAAGTATGGGAGTATGTTGCTTGTTTAATGGGAGAAATTGATGTCTATCGACCAATGGTTTGGAAACTATAGTTCTTTTGCATTGGCAAAATCGACTTTTATTAGTTCAACTTATCAATAAATCCTGATTGATAAGCATCTGAGGGGGTCAGCTAATGCCTGAAACCCGCATTCTCTCGTTGACCCCCTCAGATTGATTACTGCGTAAAGCTTTCAAGGTGCTAGAGTATGGAGTTATTGATAGTAATTCTTAATTATTTGGCAATAATATTGACCCCCTCAGATAATGGCGTTTACAATGGTTACTACACAAGCCTTTCAGAAGGCTAGG # Right flank : CTAGTACAACAAATATATAAAGGGTCGAAGGTATCGTTTCGACCCTTTTTTGATGTGCAAAATTCAAATCATATAACCCATATACAAAGTCATATAAAAACAACTTTTACTCATACACGGACTCATATACAGGTTTGAGACAATGAAATTAAGTCAGAAGTAAAGAGATAACGGCGCCACTAAAGCCCTATCATTCTTTTTATTTTTAACTTATATCCTTTTACCTTTTACATACTATGTCTGTAATTTACCTGACCGAGAAGAAAACATCATTTAAAGTTCAACACCAGTATTTGAAGATGTTTTTTAATGGAAGACAGCGTACCATTCGCATTCGTAATATCAGCCAATTCATTATATTCGGCGCCATTAAGTTACCGAAAGATGTCATGCAAATTATACGTCTTAATCAAATACCCGTCCTTTATCTAACAGAAAACTTGGATTTTCTAGGACGTGTCGAAAATCCATCGTCATTGCAAACTAAATACCTAACTCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGGCTTATTTAATAAGTCGCTTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 90484-91382 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000012.1 Calothrix desertica PCC 7102 sequence012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 90484 35 100.0 38 ................................... TTCTACTTTCTGTTATCATGGATTGTGTCCAAAAAACG 90557 35 100.0 36 ................................... ACTTTATTTTCACCATTCATAAACACAATGACCTAA 90628 35 100.0 36 ................................... ATGTTGAGGTAACAAGATTATGTTACTAAAACCAAA 90699 35 100.0 37 ................................... TAAAAAAACGACATTGTTACATTGTCATCAGTGATGG 90771 35 100.0 37 ................................... ATAATACGATCGCAATTAGTTCCATTTTCCAAACCTC 90843 35 100.0 35 ................................... ATTTTTTTGTGAATTTTTACACTTCCAACCCCATA 90913 35 100.0 37 ................................... AACAATTCTGAATTTCATAGCAGATATTCTCAAACAA 90985 35 100.0 39 ................................... ACCATAAACAACCTCTTGCCTATTATTCAGGCGTAAAAA 91059 35 100.0 39 ................................... TCTCCTTGTGCCTGCTGATATAATCAGGGCATAATTAAG 91133 35 100.0 36 ................................... AAAACAAGGAAAACTCTCATAAATTTTTCATGAAGT 91204 35 100.0 38 ................................... TAAACAGTCATTTTTAAAGCACATGAAGTGCAAAAATG 91277 35 100.0 36 ................................... TTAGCCATTATTTTTTCTCCAAGAATACAAAGTATA 91348 35 97.1 0 .................................G. | ========== ====== ====== ====== =================================== ======================================= ================== 13 35 99.8 37 CTTCGACTTATAAAAAAAGTCGCTTGATTGGAAAC # Left flank : TCTACCACTACTTCTAAAATACAAGGTTTGGTTTCGCGCAAGCATAACTTAACCTTGCATCTTTAGCATGATTCTATTTTTGCATACTGGAGGGGTGACAAAGGCGCCTGTCATCTCCAATTCGCAATTCGCAATTCGCAGTTCTCAATTATACTGCAAGCAGATAGAATCTAAACTCATGTCATACCGAGAAACTGTCATGCTGAGGAACGTAAACGGAGTTTTCCCGCAGGATAGCATCTTTAGGATTTTTACGTCATACACCATTGATTAGTTTCACTTATTATTTGGCTGTGACTGATAAGCATCTGAGGGGGTCATACAATGTCTGAAACCCTTATTCTCTCGTTGACCCCCTCAGATTGATTGCTACGTAAAAGTTTCAAGGTATTCGTGTATGGATTTATTGAGAGTAATTATTAATAATTTCAAGATAATCTTGACCCCCTCAGATTATGGGGTTTACAATGGTTACTACACAAGCCTTTCAAAAGCTTGCC # Right flank : CTAATAAAAAATATAAAAAGGGTCAAAGCTGTTGCCTCAACCCTTTTTTATTAATCCACGTCTTAGTGTGTGAAAGTAGTTTTGTTTTATTTGTAGTACAGATAATAGATAATCGCGCACCTTACTTTAATAAGTTCGCAATATCCTGTAGCTCTTGCTGCAACTGGCTATTGCCAACAAATAAGCCAAAATGTATAATAACTTTTAAAAAGTGTTTTTTGACTTCTTCTTGATAGACTGTTAAAACATCTTGATAGTTGCTATTTTGTTTAGTGCCCAATAAGTATTTTATAACCTCTTCGGCTTCTACTCCCAATAAGTTGTGCATTAATTGGTTACGATGGTCGTCTTCATATTCTCGTTCGTACTGACTTACCCATTCTAGTAAACCCCACATTAAAGGTTTAAAATTTGGTTGTAAATAACATAGCCATGCAAGCATTCCTGTGTTACTTCCAATCACGCTAAAATTACCATAATCGCCTTTATGCAGTTTTTCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGACTTATAAAAAAAGTCGCTTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 514514-515206 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000001.1 Calothrix desertica PCC 7102 sequence001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 514514 37 100.0 38 ..................................... ATTTAGGTGAATTAGTAGCTTGTGATGTTGTATGTACG 514589 37 100.0 37 ..................................... ACCAAGTAGCTTGGTATCTTCCAAGTCATGTAATAAG 514663 37 100.0 37 ..................................... ATTCAATTAAATGATGATAACGCTTACACAGTATACA 514737 37 100.0 35 ..................................... CAAAATGATTAAGACTACACCTGAGACATTCTAAA 514809 37 100.0 35 ..................................... ATCGAAAGACTCTGGTATCGATTTAAAAAATCTAG 514881 37 97.3 35 .............C....................... GTATCGTTTCGTCGCGTCGCACAATTTGTAGAAAC 514953 37 100.0 35 ..................................... TAGAAAATGACGAATCTAAACTAGAAGATTCGTAT 515025 37 100.0 35 ..................................... GAATGAGCTAGGGATTGAGTATGAGATAGAAAATC 515097 37 100.0 36 ..................................... AGGGAAAATATTAGAAAAAAAGGCGAAATAATCAAA 515170 37 91.9 0 ..................T...T.T............ | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 98.9 36 CTTGATATTATTATTAATCCCTATCAGGGATTGAAAC # Left flank : AGTCAAAGGAGACCCATTACCTGGAAGAATTGGTATATTTGTTGAGGAAATAAAACCTGCTGTAGAGTCTGTAAGGCAAAAAACAGGTGACTTAGAAAAGAATTCGATTATTGCCAATATTCAATACCAAGTCAAAAAATTACCCGAAACTTCAACAATATTAGGTAACTTAGTCAAGGAAGGCAAACTAAAAATTGTTGGTGGTGTCTACGACCTAGCTAGCGGAAAAGTTACATTAGTAACCTGATTTTAGGCGCCTGTGCATGAAATGCACAGGCTAAAATATGTCATGATGAGAAACAAAGCATCTCCAAAACTGTCATGCTGAGGAACGAAGCATCTTTCTTGCAGATTGTTACGCTTAGAAAAAAGTCAAGTTACAACCTGCATCTAGCATATTTAACCATGAGTATTTAAACCTACGTATATAGTCCTCAGTCTATGTATCCACCGCGAAAGGGTAGGTGTAGAAAAATAGGATTTGGTCAAAATCTCTGTAA # Right flank : CCCAAACTCATCTAGTAGCCATTGTCTTGGGTAGTACCTTTAACTGGAAAGATATAATTGCTTATGCTATGGGCACTATAATAATTATACGTTTAGAAAATAAAATAAAATAGTTATGTCTGATGCGTTCGTGATATTACAACTAGGTTTTACAGGCGCCACTATTAGTGATTTACAGCAAGATTTAACAACTATCGAGTATTATGCAGGCGCCATTGATGGTGTATTTGGCACCAAAACGAAGAAGGCTGTTGTTCAGTTTCAAAAGCAATTTAATTTAAATGTTGATGGCATTGTTGATTAGGGACTTCCAAATAAAAAAATCTCCAATATCTTCTTGTGGAATGGGCAGGAAAGCCCGTTTATTTAAAGAAGGCGGGCAAGGATGCCCACCCCACAAGATGGAGAATTAAATTTTTGGAAGTCCCTTATAAAACGCAAGCTGCACTTAAAAAAGAAGTATGGGCGCCTTCTAGAAACCTGGAATATACCTTTATATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGATATTATTATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 774260-773151 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000001.1 Calothrix desertica PCC 7102 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 774259 36 100.0 35 .................................... AATCTTAAGACAGCACGCAAAGCAATCAGGAATTT 774188 36 100.0 35 .................................... GTAGTATTTCTGGAATGTGCTAGAGAGATGTTGCT 774117 36 100.0 36 .................................... GGACAATGCGATGTTAACAATGCATGGCGCCCCAAC 774045 36 100.0 35 .................................... CAATGTTTCTTTGTCAAAACCTCAATCGATAGACC 773974 36 100.0 35 .................................... AACTATCACCAGCAGGGATTTGAGATTCTAGATAA 773903 36 100.0 36 .................................... TACTTACTTCAAATTTGGTTACTACTGAATCAAACG 773831 36 100.0 38 .................................... TTGCATCTATACCTACTTAACTCAACTATAAATAGGTT 773757 36 100.0 35 .................................... ACCACAGTTGCCACATGTTTTAGAAGTGTAAGACT 773686 36 100.0 38 .................................... ATGTAAAATGTTTGTAACCAAGGGAGAAAGTTATGTTG 773612 36 100.0 34 .................................... TTTTGGGCGTCTCTGTTTTCGCAGACGCGGCAGA 773542 36 100.0 35 .................................... AATACAGGTCTAAGTTCAAAGAGATACTATCAGAA 773471 36 100.0 34 .................................... TAAGGATAATTAAATAATGTTAACAAGTCAAATT 773401 36 100.0 36 .................................... TATATGCACCATTAGCAAGTGGAACTAATTATGATG 773329 36 100.0 35 .................................... ATACTGGCACCGTTACTAGCTACCCTATTGAAGTC 773258 36 100.0 36 .................................... GAAATTACACGCGCGCTGGTTTCTGCAAAGCAATTT 773186 36 94.4 0 ..............................A....T | ========== ====== ====== ====== ==================================== ====================================== ================== 16 36 99.7 36 GTGCTGTAACCTTAGATGCCGTAAGGCGTTGAGCAG # Left flank : GTCAAAAACGATGGCGCAAAGCTTACAAACTTATAGAAGGATACGGCGAAAGAGTTCAATACTCAATATTTCGCTGCTGGTTAAGTCAACGCACGCGCGAAAAGTTACGTTGGGAATTAGAAACAATATTAGCTACTGAGGACAATATCCTATTTATTCGTCTCAGTAACCGCTGTGTCGAAGATATCCCAAAATATAACCGCCCTGGAATATGGCAAAATCGAGACGAACCTTTTTTAATCGTCTAAAATTACAAGCACCTCTGAGTGTGAAACCAAAAAAGACAACTTTTTTCGCTGTAAGACTTGTAGCAGGATAGTTTAAAGCCTCTTTAAGTCTTTAGAGGTGCTTGCAAAATGCTGAAAGGCTTACCAATAGAGAATTACAGAAGTTAGTTTTTTCTCTTTTCTCATATAACCAAGTTCTGTAATAGCTTTTTGCACCAGGTGCTTGTAAAATCGTCTAGGGAACTGCGCCATACAAGGATTTTGGAAGGCGCC # Right flank : GAACTGCCATAGCTAACCCCAGAGTAGCAAATTGGGGTGTAGCCTTATACGGTTAATTAATAATCGGCAATAATAAAGCCACCACTAACTAAAAACCCATAAACAAGTAGCCCAAATACATAAGCGATATTTACACCACCGATAATGGAAAAGAACTTAATTAAGTTTTGACGTTGCCAATTAAGCGTTAAAATCAAACCAGTTCCAAGCAGGGCAAATAAAGCCGCAATAAACATTATGTGCGACTCATTCAAATTTAGTAAAATATTTGTTACTGGTTTAATTTTATAAATTTGAATTATTCCCTGATAGAAAATATTCAAACCGATAACTAAACTAGCAAACACCTGTACATATCTATTTGGATATTGCCAAATAATAATTGCCGCAAGAATACCAAAAATAACGGATAAAAAGATTAATATATTTGACCAAGTATTTTGATTGAACTGAGCAAACCAATTATCTGACTTTAAAGTTTGTAATTGCTGGCTAGTCAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGTAACCTTAGATGCCGTAAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 778348-776523 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000001.1 Calothrix desertica PCC 7102 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 778347 36 100.0 36 .................................... CTGCTACGTTACGCTCTACCTCTTCCGGGGATATCC 778275 36 100.0 37 .................................... TTTACCGTATCTCATTAGCTTCTAACCAAAATAGACC 778202 36 100.0 36 .................................... TCGCCGTTTCCCTGTAATTAGGCGGCAATGATGAAG 778130 36 100.0 35 .................................... TTGGTCAATCAAGTTAGAAATTACTACCTGATATT 778059 36 100.0 34 .................................... CTTGACTCAGTAGTAACCAGATTTGGAGTAAGTA 777989 36 100.0 36 .................................... TACAGCTATTTGCATTGGGTCATCATTGGGTGAGAA 777917 36 100.0 36 .................................... TGATTGAAAGTTTTTTCCCAGAAGTACAACCCAATT 777845 36 100.0 36 .................................... GTATTAGGTTCTTCAGTAGGCGTTTAGTTAAACATT 777773 36 100.0 34 .................................... TGACTTCAGGGACGTTCATAGCTGGTAGAGGTAG 777703 36 100.0 34 .................................... CATTTAACCATTTGGGGTCGTTTGTCACTTGATA 777633 36 100.0 36 .................................... AATTAGTAGCGAGCGATATAACCAATTTAGAAGAAG 777561 36 100.0 36 .................................... AAGACTATTTAACGCCTGACGAATACTGGATTGATG 777489 36 100.0 35 .................................... TTTAAATGGTAGTTTCGACCAACAACCTTTGCCAG 777418 36 100.0 35 .................................... TAATCAAAAAGCAGCTAGTAAACTGCAATTCAACT 777347 36 100.0 35 .................................... AGATACTGAAACACTGTTGCTGACTGGTATCTACC 777276 36 100.0 36 .................................... CTAAGAAATGTGCGAAAGAGATGGAATTGAATCCAA 777204 36 100.0 35 .................................... AGACAAACCCTTGGATGGGTAACAGCCGTGAAGAG 777133 36 100.0 36 .................................... AAATCCCTTCTTGAATTTAATTGGGTAGCAAATATC 777061 36 100.0 36 .................................... AGGTAAGTAATGGGTTTCAGCAAGTAGAACTAGAAA 776989 36 100.0 36 .................................... GCAAGAGATAGCTTTACTTTAATCCGTAGGGTAAAT 776917 36 100.0 36 .................................... TTCTTTCGGTGATGACTTCTTTGAATTTACTTTGCC 776845 36 100.0 35 .................................... GGAGGACTGGTAGTGATTGGAGGCGCCAATATTTG 776774 36 100.0 37 .................................... TGCAGCTATGTTTTATCATGCGACTAAAAATAGGTGT 776701 36 100.0 35 .................................... TAGTATGATGGGTGCGGGTGTCGCATTTCCCGTAG 776630 36 94.4 36 .....................T.............T CACTCAATTGAATTAATGCGAAAGCGTGGATGGTCG 776558 36 75.0 0 C...........C........T......CAT.AA.T | ========== ====== ====== ====== ==================================== ===================================== ================== 26 36 98.8 36 GTGTTTTAACCTTAGATGTCGCAAGGCGTTGAGCAG # Left flank : ATTATCATTAGGCGAAAGTCGAGATTTAGTAAATGCTGTCAAACTTTGGTCAGGTAGTTTTAATAAACAACCGCGCTGGTTGGTTCAAGACGAAGATGGAACATTAGCATTACCTTATTGGGTAGACCACGTTGGCTCACAAGGTACTCGTTGGCGCCGATACCTACTTCGAGAACAGACACAAACCCATCCACCAGAACAAGCTTGGACAATAATTCAAACTGAATAAGATTTACCAAGCATCTAAAATTGCAAGCACCTTCGAGTGTGAAGTCTAATAAAATCACTTTTTCACCCAGAAGGCTTGTAATAACAGGGTTAGGAGTAGTTTTCAAGTCCTTAAAGGTGCTTGCAAAATGCTGAAAGCTTTACTAGTCAACAGTTGTAGAAGCCCAATTTGCTCACTGGCTTTTGCAATCAACCTCTGTAATAGCATTTGGCGCCAGGTGCTTGTAAAATTGTTTAGGAGGCTTTGCTGCATAATGTTTTCAGCAGGCGCT # Right flank : TTGTACAACTTATTACAATTACCTTACAGTCATTTATGGAAACTGTTCAATACCTTGACCTCAACACCAAACTTGAAACTATCCGTGTGTCTTCACTTCACGCACTTGCGTATTGTCCTCGTCTTTTTTACCTTGAAGAAGTTGAGGAACTTTATACACAAGATGCAGCAGTCTTTGCTGGGCGCCGTTTACATACGGAACTTGAGAAAAAGGAAGATGAAGAATGGGAGGAATTATTTCTTGTTAGTGAAGAGTTAGGTTTGCGTGGACGTGTTGATGCGCTACGAACTCGTGATGGAGAAACTATTCCTTATGAACACAAGCGCGGACGTTGCCATCGGGATGAAAAGAAGCAACCGCAAGCTTGGGAAAGTGATAAGTTGCAGATTCTTGCTTATGCTTGTTTACTTGAATCAGCATTAGGTCTTCCAATTAAAGAAGGTCGTATTCGCTACCATGCTGATAATGTTTTGGTACATGTTCCTTTAGATGATGCAGGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTTAACCTTAGATGTCGCAAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 786869-785771 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000001.1 Calothrix desertica PCC 7102 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 786868 36 100.0 36 .................................... TTATCAAATCGTGGTGGTAATTTTTAATCCTTGACA 786796 36 100.0 36 .................................... TGGAATCCATGCTCAGGAATTGTGCGGATTACTTCT 786724 36 100.0 34 .................................... TGAAATCGCTGTTTCTATCGTGTGTGTCAACACT 786654 36 100.0 35 .................................... ACAATTACAGCTACTAATACTTTGCCTAATTTAAC 786583 36 100.0 34 .................................... TAACTATTTCGTTTTTCTTCTGTTCGTTTAAATT 786513 36 100.0 34 .................................... CAACACCCTGCCCTTGGTAATCATCCTTGACTTC 786443 36 100.0 36 .................................... TAATCTATTACGACAAAGCCAACATATCCGTACTTG 786371 36 100.0 36 .................................... TAAATGAAAAATACAAAAGCAGCAGAAGAACTAATT 786299 36 100.0 35 .................................... TAAATCCGTCAAATTCTTGATTTGTGATAGGGTCA 786228 36 91.7 35 .....G......A........T.............. AAAAAGTTACAAGCGAATTTGAAGCAATGTTGCAG 786157 36 91.7 35 .....G......A........T.............. ATTACGCTGTTGGGTGGTACAGTTAAAGCGCGATT 786086 36 91.7 35 .....G......A........T.............. TTCTTCTTTGGCGCGCTCAATCAATTGCTCTTGAC 786015 36 91.7 37 .....G......A........T.............. CTGATTGCTTGGCTTCTTCTAAATTAGTTATATCGCT 785942 36 91.7 34 .....G......A........T.............. GTTAGAAATTATCAACACGCGCGGGACAGGTATC 785872 36 86.1 30 .....G......A........T..A..........A GAACGGATGCGGAAAGCCTCAAATAACTTC 785806 36 86.1 0 .....G..............AC..A.....A..... | ========== ====== ====== ====== ==================================== ===================================== ================== 16 36 95.7 35 GTGTTTTAACCTTAGATGTCGAAAGGCGTTGAGCAT # Left flank : TGACCTCTCAGGCAAACGCCAACTTAAAAAGAGTAGGAAAAAACAACTGGCGCCGTCCTAACAACATCTTTGTTGTGGCACAGGCATCTTGCCTGTGCAGTGATAATTTGCAACGGATACAACGGATGTAACGGATAAGTTATTCGTTATGAACAGACTTTAGATTGTTGGTTGGGTGCAGCGTAGCGCAACCCAACACCAAGGAAAATTTTTGAATTTGGATGCCACATACAAATAAACATGAGTTTAAATGCAAGCACCTCTAAGTGCGAAGTCAAAAAGTATAGCATTTCCACTTAAAAAGCTTACAGGCATAGAATTTAAACACTTTTACAACTATTACAGGTGCTTGCAAAATGCTGAAACCCTTACTGACAAAGAGTTTCAAAAGTCGCTTCTTCCGATGTTTGAACATTCTCAGAAGCTGTATTAGCTTTTTGCAACAGGTGCTTGTAAAATTGTTGAAGGAGCATTACCACGTAAGCCTTCCAGCAGGTGCC # Right flank : TTTGTTTTGGCTTGGTGAAAACTTTTGAGGCACAAAGCATAAGTCCTTCTCGTTTACTGAGAAGGCTCAGTTATTTTTTTGATGTTTCAAGTAGTTAAGTTAGCAATTTATGCTATAGTCAATTTATAGACGTGTAAAAACTTGGAGTTAGCAAGTTTATGGAGAGTCGGCAGCTGTCAATTTTTGATTACGCACAGCAGAGTCCTGTAAAACAGAAATTTCCTTTTCCAGTAGTTACTTCAATTGCATCTCGATTAATAAACGTACCTCCATCAACTTTACTTCGACATAAGCAACAGCCATTAGTGCGAAGATTGGGAAATTGCAATTTTCTAGTCTGCTACGCTGGCAAGGTGCGTCGTGATTGCACGTGAAATATAAGTTGGGAAGCACACGAATAAAATATTTCAGTCAAAACATGGTATTGTGGTTTTAACCTGTGATGCCACACGTTATTAAACTTGGCTTTGAGCATTTTCACGGTGTAAAGTTATTGAGGT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTTAACCTTAGATGTCGAAAGGCGTTGAGCAT # Alternate repeat : GTGTTGTAACCTAAGATGTCGTAAGGCGTTGAGCAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 258447-258022 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000017.1 Calothrix desertica PCC 7102 sequence017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 258446 37 100.0 43 ..................................... TTCAATAAGATTGTAATATTCATTTTTATTTATCAGACCACCT 258366 37 100.0 41 ..................................... TTGTAAGAAACTTTGTGTCCTCCTAAGCTTAGTGAGTAGCA 258288 37 100.0 43 ..................................... TAAGCGAAGTACCATTATTGATACCAGCTCCTTGACCAGAGCC 258208 37 100.0 38 ..................................... ATCGTACCTATCTCTTTTGCTTGTTGCATACGTCCATA 258133 37 100.0 38 ..................................... GTAACAACATTTGTGTTACCGTTGCGAATATCGTTGGT 258058 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 100.0 41 GTTATTTACGACCTTGACCCCGAAAGGGGACGGAAAC # Left flank : TTGCACGAAAATATTTTGAATCACCTACTTGAAAACGATTGGTTGCCAACTCTTAAGTTAAGCGAAGATAACCTTAGAGTTTATCCCCTAAACGAGACCACAAAGCAACAGGTGCGGGTATATGGCAGTCCCCCACCTTACGAACCACCTGATTGTTTAATTTTGTAAACACTACACTATTGTATAAAAGCCGTATGTAAACCCTGAAACCACCTAAATAGAATGGCGCCAGCAATTGTAAAAGATTGTAAAAATCAGTCTTAAATTGACGCAGCAAGCCTGTACAACTATTCAGGAGTAATGTTGTGCTTACAAAAGATAATCAGATTTTTTTGGTTTGAATACTGGCTTTTTTGCACTATAATTAAGTTAAGTAGCAATTTTTGGCGCCAAATCTTTTTTGAAGCGAGTACTTATTATCTAAGTGACCTTAAGCTCTCAGTAGTCCGGCGCAACTGCACCTTGAAAACTAAATACAGCAACAGCTTTTTAGTAGTAGG # Right flank : TTCAAGCTGAAAAACTGGGAAACGCCATCGAAAGGCGCCGAAGTTATTGAAAGATTACCTAACATTCCTACCCAAGTAGAATTATGAGATAAATTTCAACCTGAACGCGACTTGATTTTAATTAAAAACCCCGATAATTTAGGAGAATGTTATCTCGGCGTCACTAAATGCATTCGTGAATTACAGCAAAATCCAGATGTAGAAATTCTCGCTGACTATACGGGTGGAACTAAAACTATGTCAGCAGCGTTAGTTTTAGCGGCTGTTGATTGTGGTATTCCTCTTTATATTACTGTTGCAGTGGCCAGGGAGAACTTGATAAAATTTGAACGTGGCGAATATACACAATTGGTAAATACAAACTTTCCACTAGTTCAACGTAAATTTTAACAAGACTAAAATTAATAATAAGAGTATGCCAAAAACAAAACCTTTTAAAAGGCAACTAGAAAAAATGGCGCCGGGAAGAAGGACAAAAATAGAAGCTGCTGTTCAACAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTTACGACCTTGACCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 6315-6733 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000027.1 Calothrix desertica PCC 7102 sequence027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================= ================== 6315 36 100.0 36 .................................... CTCTCTTCGTTATGCCGAATTGCATGACAAGGCTCT 6387 36 100.0 38 .................................... AACTTTATTAGCAACATCTTTCGGATTGCGGTCAGATA 6461 36 100.0 201 .................................... TTGTTAGCACGATGATTATTAGCCGTTTGTTGGGTTACGCAAAGCCTCCACCCAACCTACAAATTTTCTTAACCGAGCAGTATTGTATACTCAAAACGGCTTAAAACTATACTTTTTATGCAAACGTAAACCTTTAAGATGCTTCGTTCCTCAGCATGACAAAGTTCATTTTTTACCCGTTTGCAGTATATCAGTTCCGAG 6698 36 83.3 0 T.......T..C....G.....A............G | ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================= ================== 4 36 95.8 92 GTTCTTACCACTACTTCTCCGTGAGGAGATTGAAAC # Left flank : ACCCTCCCAATGCTGATGATTTCAAATATCTGGCTTATTCCAAACCTTAGTCCTAGGTTGGTGTAGAAGAACGTAAACGTTTCTCAAGCAGCCTACGCATTCTCACTAGACCGCGACTTCGTTATTTATTATCCTGAGAATGGGAACGGCGCCGTGTGTTAAATTTATTTCTAAGAAGTCTTATTAAATAAACACATTTTGCTTCGGGCGCCATTTTTAATAAATCATAAGCCCGTAGCGATACATCTTCCATTACTGTGTTTTTTCCTAAGTACGATATACTTTTAAGTAGCTTATATTTTGGCGGCTCGAAGCGGGAGCTAAAACCTAGGGGGTTCTGCCAAAATGCTCAGAACCTAGACAACATAATATTTACAGCAATTCAGTATTTATAATAAGTGAGAAATTGTTTCAATACTGGCGCCTGAAATGGCATCTTTTTTTAGTCCTGCCAAAACCTACTCTCAGAAGCTTATTCTACGGTGGTTACAGGCGCCGGG # Right flank : GATTACGAACGTAGCTTCAATCTTTAGTAATTACACGAACAATTTATGATTAGCGCTCCTGTATCTTTATACCTTTATACTCATTATTTATTGCTACTTTGTACTTACGCTAACAATATTATTAGCGTGTGCTGAAAGCAGATATCAACGTGGTTCTGTTCCAAAAAAAGGCGCCAATGTTAGAAAAGCAGGTATCAATGGGTATTCTAATATTAGAATGCAAAGATTACTTCACTTTTAAGCGTGCAAGCGCATAAAAATGACGTAAGAAATTGTCAAAAAATCCCCTCTAACCCCGTGAATTCGGGAAAAAAAGAGCATTTTAGTCTCATTATTAAGGGGAAAAAAAGATAATTCTTAGCCCCCCTTATTAAGGGGGGTTGGGGGGATTATAACTTTTAAATAAAACTGTGCTTAACTCTCAAAACAATTCCCAAAACAACCATCCTCTACCACCTGGATACTCCATTCGTCTTGCAACAGACGAAGATATTCGCAAG # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTACCACTACTTCTCCGTGAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 12073-13581 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000028.1 Calothrix desertica PCC 7102 sequence028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 12073 37 100.0 36 ..................................... ATAAAACAGGATTGTCTAAAACTAAGGTATTACTTC 12146 37 100.0 36 ..................................... GACTATTTTCTTTTAGGTTAAATACTCTTTTTCTAG 12219 37 100.0 37 ..................................... AAGTTTGTTGAACAACTGTCTTTTAAAACTTTCACCT 12293 37 100.0 35 ..................................... TAATATGGAAGAAACAATTTACGAAGAAGAGTTAG 12365 37 100.0 35 ..................................... AAAATGCCACAAGAGATAGATGACTATGTTCGTGC 12437 37 100.0 39 ..................................... AATCTAAACGCACTAGCCCCATGATTCGCTTTTATGCGA 12513 37 100.0 36 ..................................... CCCACTACAACGCGGACAGTCGAACACGCTATCGAA 12586 37 100.0 36 ..................................... CTTTAATAGATGTAGGTGTTATTAAAGAGAAACAGA 12659 37 100.0 40 ..................................... TTAGTTAATGGCGAGAGTAGAAATTCATTATCACTTCCAA 12736 37 100.0 38 ..................................... CGGACAAGCATTAGACTTCTTGGTTGCAGCAGATGGAG 12811 37 100.0 37 ..................................... CATTTTCTAACTTGGGGACTATTAACAACAACTCCTC 12885 37 100.0 38 ..................................... TTGTCGTTTTACTCATGGCGCAATACAGACGGCTCTAA 12960 37 100.0 36 ..................................... CCAAATTTACGTTTGATTTGTCAAATGCCAACAGGG 13033 37 100.0 37 ..................................... CCTTTCTGTTGCATCTCTAAATCATATTGTAGACTGA 13107 37 100.0 37 ..................................... ACCGAATGCTTTCGAGAATAGTTTGCGTGCTGCCAGT 13181 37 100.0 38 ..................................... GTTTGATATTTCAATGGTCAAATTACCGCACCATCCAG 13256 37 100.0 36 ..................................... CAGAAAAAGTCAGGTTTTATTACTGAATGGAAGAGT 13329 37 100.0 34 ..................................... AACTTATACCGTTAGGCAATCAAGATGAAGTTAC 13400 37 100.0 35 ..................................... CTCACTCGATAAAACTTCTCGACTATTTTTATCAA 13472 37 100.0 36 ..................................... TTACCTTGTCGCAAATCCCCAAAACTATCCCAAAAA 13545 37 94.6 0 ........T..........T................. | ========== ====== ====== ====== ===================================== ======================================== ================== 21 37 99.7 37 CTTGATACGTAGCGATACCCGCTTGCGGGACTGAAAC # Left flank : TTGCTCAGTTCCCAAAGGTGGTTCCCATTGTGTTAGAAAGTAGATTAAATCGTTTGCCTGTTTCAATTGTGCAGCAAGAATACGACCGTATTGTTACTCTTATTTCATAGCTATAGGCGCCGAAGTTTCTAGTTTAGTGTTGATGCTCCAAATTTCAATATAATTAGATAACCCTGCCATTTGCTATAAAATTTACCGTACTTTACCTTTGTTGGCGCCGAACCTTGGTAAAAATATCTATAAACTTAAAGAGTTGGACATTTAACTAACAATTAGTTTATGATGTTAGTAGATTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTAGACAAGTTAATAGTTACAGAGTTTGGTTACTTGAGATAAATAAGAAATTGTCTCAATAGGAGCGCTTGAAATGAGGTCATTTTTCAGACCTGACAAAACAGATTGTAGAATCCTTGCTCTATAAGGGTTTCCAATGGCGGA # Right flank : CCAGTCTCAACTCAAGAGATTGACCCTAAGTTTAAGCTTGATACTTAGGGTCAGTTATTGTATAAATTGTAAGTCTTTTGAATCTCGTCAGCTATTTGTTGGCGTAAGTCCCAAGGTAATAATACTTCGACTTTTGAGCCTAAAGCTCGTAGCCATCGGAGTACGTAATAATCTGTGACTCGATAATCTACTCGGTAGTAAGTATCTGTGCTTGGACGTGATTTAAAGGTTTTTAGTAAGTTTTTTTGCTGTTCTGGGTCTTGTGTATTTTGTTGGATTAATTCAAATACTGTTTGATGTTCTATTGGTGTAAAGGTTTCGTGAACGTTTATTCCTCTCATATAGTTGTCATGAAAATTCTGCTCAAACCTTAATATCATTAGTGATTTAGGTTTGTAAAAGTCGCATCCCCAAGCTTCTTTTAGTTTATCGTTTACAGTTTTTGGAGTATATAATTTATTTTGCCGATGTTGGTCTCTTAATAGCTGTGGAACACGGGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGATACGTAGCGATACCCGCTTGCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 32723-33416 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000028.1 Calothrix desertica PCC 7102 sequence028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 32723 37 100.0 35 ..................................... GCTAAATTCTTTCTTTTGTGCCTCGTATATTAAGT 32795 37 100.0 36 ..................................... GTCTACCACCTTCTTCTATATTAAATGGATTATAGT 32868 37 100.0 35 ..................................... ACTGCATATTCGCTAGCTCTATTTGGGTCGAGTTC 32940 37 100.0 39 ..................................... AAATTAAAAAGACTGAAAAGAAAAAAGTTGCCCGTGGTC 33016 37 100.0 35 ..................................... ATAGTATTGATGGCGCCGAAATTGGGCTAGCTTTC 33088 37 100.0 35 ..................................... GCGCCGTTATTGCCGAGAAATTAACTAAATTCAAT 33160 37 100.0 36 ..................................... CTTGATTACTTTAAGGCGCCGTTTCTCCTCGGTCGG 33233 37 100.0 37 ..................................... CAAACTGGTGCATGGGAGAGATGGGAATACAGGAAGC 33307 37 100.0 36 ..................................... ACTTAATTGATTATTTATTTGGCTTGTACTTTATTA 33380 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 100.0 36 CTTGAAACGTAGCGATACCCGCTCGCGGGACTGAAAC # Left flank : TTTACTTGATTATTTACGACCTGCCAGATAACAAAGCCGCAAACAAACGTCGCAATCGTTTACACAAAATGCTAAGTGGTTATGGCGCCTGGACGCAATATAGTGTGTTTGAATGTTTTTTAACTGTGGTAAAATTTACTCAAATGCAAATTAAAATTGAAAAGCTGATCAAACCAGAGGAAGATTCGGTGCGTGTTTACGTACTTGATGCTGGCGCCGTCAAACGAACCATAACCTACGGCTCAGAAAAACCTCGACAAGAACAAGCTATTATTATATAGTTGGTTGATAGCTTGATGTTTGGCAGACCGAAGCGAGGTCTAAAACCTAGGGGGTTCTGCCAAAAACGCCAGAACCTAGACAAATTAATAGTTACAGCGTTTAGAAAATCAAACTAAATGAGATATTATCTCAATAAGAGTGCCTGAAATGAAGTCATTTTTGAGATCTGCCAAAACCGCTTGTAGAGTCCTTGCTCTATAAAGGTTTCAGATGGCGGA # Right flank : CATCAGATTTGTTTGCATACAGTTTTAAGTGTTTGCCGCAACCAGCTATTAGCATCATCTTTGTCTGTTAATTGACTCCATATCATTGAAACAGTCCAAGGTTGTATTTCTAGTGGTAGTTCAAAAATCTCTATATTAGCTAAATTAGAGAAATAGGCGCCAATTCGATATGGTACTGCGGCAATCATATCGCTGGATGAAATAATTGCTGGTAATATTAATAAATGTGGCGTGGTTAGTTGAACACGACGTTGGAGATTATGAGTTGCTAGAATTTTATCAATTTCACCTGTTGCATCTTGGCGAAGAGTAACTAGTACGTGGGATAAATTGGCAAATGTTTCTAGAGAAATTAGTTTATTCTTGATGGCAGGATGCTTTTGACGTGCGATTCCAACAAAACGTTCTTGAAATAGTGGTACACAAATTGTTTGCCGAGGTGGATTTGGAAACACGCCTAATCCTACTTGAATTGTACCTTGTTCTAACATTTCCCCTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACGTAGCGATACCCGCTCGCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 287672-290011 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000005.1 Calothrix desertica PCC 7102 sequence005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 287672 37 100.0 36 ..................................... TTATTTACAGATATTGACGGAACACTCACAGGTACG 287745 37 100.0 41 ..................................... AACAACGCAATAAAGCTTTGAGAATCATTGACACCCTCAAT 287823 37 100.0 34 ..................................... CTGCTATCTCTTTAACTTGCTTGTAATACTCAGC 287894 37 100.0 38 ..................................... CTCTCTACATTGATGAGAGAAACACATTCTCAATCAAA 287969 37 100.0 37 ..................................... TACTTTTCAAGAGGAATTAAAAACCGAAGCTGACAAA 288043 37 100.0 35 ..................................... TTATGCTGATGGCTCCAATTTCTTTGATTCATTCA 288115 37 100.0 34 ..................................... CTGAGCTAGGCAAAAGCATCCTTAAAAATACCGA 288186 37 100.0 33 ..................................... GCTCAACTAGATCAAGCGCAAGTAACGACAGCA 288256 37 100.0 34 ..................................... ATCTGCAAAACCCGTGCCGCCATTCGCTTGAGGC 288327 37 100.0 33 ..................................... TTTAACAGGACGCTTACGGATAAACTTATTAGA 288397 37 100.0 34 ..................................... GTATTTGCAAATGCCTAAAGCACCATTCGATTAA 288468 37 100.0 33 ..................................... ATCTATGGTACAGAGGTATGTATAGATGTCGGT 288538 37 100.0 42 ..................................... CTCGGTGATTCGATAGGAACACTTTGTAAGCATCTCTCTAAA 288617 37 100.0 35 ..................................... ATTACAAATGTCAATACCAAATACTTAATAAACGA 288689 37 100.0 33 ..................................... ATCGTCCTTCGATGCCTAAATTAATTAACCATG 288759 37 100.0 35 ..................................... TTTGAAGTCGATAGCGGCGACGCAACGCTTAAAAT 288831 37 100.0 34 ..................................... TTTCTGAGATATCTTTTTTATCTTTAGTATCTTC 288902 37 100.0 34 ..................................... TAATTAACTTATCCATAGACATAAGCCCTAAGCG 288973 37 100.0 33 ..................................... ATGCTCCCGCCAATTTTCGACCCAATCTGAAAC 289043 37 100.0 35 ..................................... TAATGACTCCATATTTAAGCTTTGTATTGACAAAA 289115 37 100.0 34 ..................................... CTTTTCCTTGACGTTTGCAGAGTTGATTAAACGT 289186 37 100.0 35 ..................................... GATTATAGTAGGGCTAGCTTTAATATCTAGTGCGG 289258 37 100.0 35 ..................................... CCCATATTTCCTCTAATCCGGTACGAGTGAGAATA 289330 37 100.0 34 ..................................... AAATGTTTCTACCTTAACCGTGCCTTCATTATAG 289401 37 100.0 35 ..................................... GAGCCATTTGATGGCGTAACCAGAAAAAAAATAAC 289473 37 100.0 35 ..................................... CCGAAAGTTGAAAATAGCTCTAATGTTGAGGTCGC 289545 37 100.0 34 ..................................... CGTGAACCAGGAACACTGCTGCATTCCTCTCGGT 289616 37 100.0 36 ..................................... TTTAGTACATGCATCTCCAAGCTGTAAAAACTTTTC 289689 37 100.0 34 ..................................... GTATTTCTATATATTACTACATTTTAGTTTTAGA 289760 37 100.0 34 ..................................... CTTTAGTTAGCCGCCCATCTCCACAGCCAATATC 289831 37 100.0 37 ..................................... AGAGAGAGATTCTTTAAAATCTTTATAAGTCTTATTA 289905 37 100.0 33 ..................................... TTCAGGCAATCGCCAACATGGACACCTCCAGCT 289975 37 97.3 0 ..................................G.. | ========== ====== ====== ====== ===================================== ========================================== ================== 33 37 99.9 35 ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Left flank : TTAAGAGGGCGGGCAAGGATGCCCACCCCACAAGAAAATTTTAGCTTATCAACAAAAATCATCTAGCATATATATATAGTCAAAACAATTCAAAACTGTCATTCTGAACGTAAAAACTGTCATTCTGAACGTAGTGAAGAATCTCCAAGATAATCAGCTTAACGAAATGTAGCTCAATATGACAGAAATCTATATTTTACCTGTTCGCAGTAGAAGCCATTAGTACATAAATATTATAAAACCCTACGTATTTTTGGTCTTAAACTTGGTATCATGCGCGGATGGGTAGGTGTGGAAAAAGAGACTTTGACGAAAATGGCTGTATCCAAGTCCCCACAAGCATTTGCGGACTCGTTAGATAAAAACCATCCGCGCACCTTACCCAGAGAGGCTTTCAGCGATTTTGACCTTGCACAACCACCATTTCTCATGCTACAATTGACCCATCCGCGCAACCGAACCATGAAAACTAAATATATCAAGGCTTTCAGGCGCCCGCT # Right flank : CTTCAGAAAATATACGGTAACAAAAATGAGATTTTTTTAGTCTTCTTGAAGAGGACTTTTGCTATTAGCATAGGGGTTTGCAACACGCATAGCGGCTAAGAACGCAGCGAATCATTTACAATTACTGAGTATTATTAACTTAGAGAGAATCCTTGGTACAAGATATAAATATAGGAGGTATCAGAAAAAATTAAATTTTTGGATTTGGAACGGGCAAGGATGCCCATTTCACTTTTATAGAGAATTTAAGCTTTGAACTTCTTGGACTGTTAATGAAAGAATTTGTGCAACTTGTTCGATGCTCATTCCTGTTTGTAGGAGCTGAGATGCTGCGTTTAATCTTGCCTCTCGTTCAGCATCTGCACGTTGCTGTTCAGCATCTGCGCGTTGTTGTTCGGCATCTGCGCGTTGTTGTTCACGTTGGTATAATTCGTCGAGTTCTACGGGAGTTACGAACTTGCGACCGTCTGGACGGTAAATTTCTAGTGTTGTTGGCGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 304726-306505 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000005.1 Calothrix desertica PCC 7102 sequence005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 304726 37 100.0 38 ..................................... AAAAAGCTACCTATCACATTACCGTTATACCCACCAAA 304801 37 100.0 40 ..................................... TAAAGAGATGGTTCGTAAAGCCCAACGCAACCAATGGGAA 304878 37 100.0 38 ..................................... GGTAGCTTTACGGCAGAAGATTCAAGAGTGCAAATATC 304953 37 100.0 35 ..................................... TGTTGACGTTTACGATATAGATGCACCAATGAATA 305025 37 100.0 33 ..................................... TTCTTGACACGGGGGAGATGTCTGAAGTATCAA 305095 37 100.0 34 ..................................... TCAAGATGTGAAAGTTCACAAAGACGTAAAAGCA 305166 37 100.0 37 ..................................... TTTAACATTTGCTATTTTTCTCACTAACTCTGATCTA 305240 37 100.0 33 ..................................... AGTATACAAAAATTGTCTGAACAAGATGTATTA 305310 37 100.0 34 ..................................... CTATTTTGACAATAGCGACTTCAGCGTTCATAAT 305381 37 100.0 39 ..................................... TAGCCATAAGACGCAATTTCCAATTTTATCTGGCGCCCA 305457 37 100.0 32 ..................................... ATACTGAGTGATAGCGGCTCTTACTCAGAAGA 305526 37 100.0 35 ..................................... ATTTCCTTCTCTGATATAAATCTTGAAATTAACAC 305598 37 100.0 34 ..................................... CAATAGCTTAACACTTTGGACGATTTTACAACTA 305669 37 100.0 34 ..................................... TTCCTCTAGGAATACTACAAACAACTAACGCAAG 305740 37 100.0 35 ..................................... CTGTATATGGCGTGTTTGACCGTAGATGCGGGGGT 305812 37 100.0 34 ..................................... CTTCCAATGATAAACAAAGCTAGTGATTGGGGAA 305883 37 100.0 35 ..................................... GCGAAGAATCAAAAGCAACAGGATACATATAAGAA 305955 37 100.0 34 ..................................... CATGCGGAGAAACCCAGCCACATTCCCAAATAGA 306026 37 100.0 39 ..................................... GACGTAACTTTGCAGATAGAAATAGGCGACCCTTTACCA 306102 37 100.0 38 ..................................... TTATGGAGGACAAAAGGAAAAAATTTATCGCGTCTTGA 306177 37 100.0 41 ..................................... AACCTCGATTGTGAAGTTTACCTGGTTTTGAAAAACTAGGA 306255 37 100.0 34 ..................................... ACTGTTTGAAAACTGGATTACTGAGCGTTTTATT 306326 37 100.0 35 ..................................... TATTCCTACATGCTCAAGCACGTCAAAGTAAGTTC 306398 37 100.0 34 ..................................... TATTTAAATGGGCTAAAACAACATTTTGGCATCG 306469 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 25 37 100.0 36 ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Left flank : GGGCGTGCAAACAGGTAAAATATAGACCTTTTGTCATGCTGAGGAACGAATATCATGCTGAGGAACGAATATCATGCTGAGGAACGAATGTCATGCTGAGGAACGGATGTCATGCTGAGGAACGAATGTCATGCTGAGGAACGAAGCATCTTAAAGATTGGCGCCTGTTTAAAAGTAAAGTTTTAACTCGTTTTCAGTACATATATAATTATTGATAGGGATGTGGTTCTACCATATCCCTATCTACGTATTCTGACTCTTCAACTTGGTATCATGCGCGGATGGGTAGGTGTGCAAAAAGAGATTAAAAAAAAAATGGCTGTATCCCAGTTCCCACAAGCATTTGGAGAATCGACAGACAAAAACCATCCGCGCACCTTACACAGAGCGGCTTTCAGCGATTTTGACTCTATACAAACACAATTTTTCATGCTACAATTGACCCATCCGCGCAACCGAACCATGAAAACTACATATATCAAGGCTTTCAGGCGCCCGCC # Right flank : CTGAAAAATTTATCAAGTTAATTTGATTAATACAAATGTTACAATATAGCAACATTGAATTGACTAATTATTATGAATAAATCAATCCCTGAAGAGTACGGAAATCTTCTGTTAGAAATTAAACAGCGTATTCGCTCTGCTCAGTATGAAGCATTGAAGGCTGTAAATAAAGAACTTATCGCCCTTTACTGGGATATTGGTAAGATGATTGTTGGGCGCCAGCAGGGTAATAGCTGGGGTAAATCAGTTGTTGAACAGTTAGCGAAGGAGTTACAAACTGAGTTTCCTGGTATTAGTGGATTTTCTGCTCGTAATATTTGGAATATGCGTATTTTTTATGTAACATACTATCAGAATGAAAAACTGCAACCAATGGTTGCAGAAATTAGTTGGACTCATAATATAGTCATTTTAGAAAAGTGTAAAGATGATTTAGAACGAGAATTTTATATTAGAATGACTAAAAAATTTGGATGGACAAAAAATGTTTTAATTCACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 316921-318123 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCL01000009.1 Calothrix desertica PCC 7102 sequence009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 316921 37 100.0 36 ..................................... TACAACGATGGTGGCGCCACGACTACAACTGCTACT 316994 37 100.0 35 ..................................... ACGGTATTTAACAAATACTTCTCTGGCAGAATTCC 317066 37 100.0 37 ..................................... CACTCTCCAGCGTGATAACCTATCATTTTTCTAACTT 317140 37 100.0 38 ..................................... TCCTTCTTTCCCAAGCATTGCACAAAGATTCCAGCGAA 317215 37 100.0 34 ..................................... AATGATATTGTTTTTGATAGCATATTCCCATATT 317286 37 100.0 35 ..................................... AAAGTAGCCGTAGCTTAGGGGGTCTGTGGCAATGG 317358 37 100.0 35 ..................................... TCTTGTACAAATATAAGCTCTTTTCCTCTAAAAGT 317430 37 100.0 37 ..................................... CAAAAGCTAAGAAGCGACGCTTTATCCCAAGCGGGCA 317504 37 100.0 37 ..................................... CTGAATTTAACACCCTTGCCCAAGATAATGCCCACAT 317578 37 100.0 37 ..................................... GTATGCAGCATGGTAGGATTTTAAAACCGCCCCTAGT 317652 37 100.0 34 ..................................... GATGTTATTGACGCGCAACCTATGACTGATGCTA 317723 37 100.0 37 ..................................... GAAGGGGTATAGATAGTAGCTATAACCCTGGTGACGA 317797 37 100.0 38 ..................................... GCACAGGGTAGCTAATAAACATTTCATTCTCGCACTTC 317872 37 100.0 33 ..................................... AAAACGTTTTGGGCATTATCTGGAGAAATATTG 317942 37 100.0 33 ..................................... GTATAAAGATTTCTCGCTAATGCGGCAAATAAC 318012 37 100.0 38 ..................................... TTTCCACTTTTGCTCTGGTAACACCGATTGCCACAGGC 318087 37 97.3 0 ...A................................. | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 99.8 36 ATTGCAATATTAAATAATCCCTTTCAGGGATTGAAAC # Left flank : CTAAATATAAAAACAGGTGTTACAAGTAGCATTCAAGAAGTTGTTATTAAAAGTAAACGCTCAGTTCCCTCTATGTGTTTTGGGGATGCTGTGTTTTCATTTCAAAGTTATTAGCAATACATGCACCCGCAATTTATTATAATATGTTAATATATTAAAGCAATTATTGCGAGTGCCATGACTCGGTTTTCACAACCAAGCCGCACAAGCAATACTATATAGATAGTGATGCAGCTTTTTTTGGTCAGGCACCGCGAACCATAGGGTGTTTTTTTGGCAGAGTCCGAATTTATTGTGTAAACACTTGTCCAGTATAGCTTTGAAGCATTCCACCTATTTACAAGGTTCGCGGTAAGTCTGAAACCCTTACCATAAAAACGGTTTTAGCCATTTTGAACGGCGCCTGTCTTGACACATTAACCTCTAAAACGCTATTCTTACTTTAGGTTCGCGGAACAGCACCTTGAAAACTAAATACAGTAAAGCTTCTACGCCAAGCA # Right flank : CATCAGGATAAAGATACAGCAGATTGCGTAATTATGAAATACGTGTAGAGACGTTACATGTAACGTCTCTACAGGATTTGGGGTATTATGTATGTACTTCTGGAAATTAAAATTTGCTGCGATACAAGGCGCCACTGTTATTTATTATGTAAGATAAAGAAGAAAAGTAATATTAGTATAGTTATGATTGTTACAACAGGGAACGATGTTGCAGGACGCGCAATTAAAAATTACGTTGGTATAGTGCGAGGTATTGTTGTACGCTCACCAACGATTGGACAAGGAATAATGGGTGGGTTGAAGCAATTAGTTGGTGGAAACATTGAAGCATATGCAGTAGCTTGTGAACAAGCACGGCAAGAAGCATATGACCGTATGATAAAACAAGCACAAAGTTTAGGCGCCGATGCTGTAATTTGTATGCGTTATGATGCCACAGAATTTGCTGAGGGAGTAACTGAAGTACTAGCTTATGGTACAGCAGTAAAACTTGAATAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATATTAAATAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //