Array 1 77248-76559 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJN01000007.1 Cronobacter sakazakii strain cro3113W contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77247 28 100.0 32 ............................ AGAAAATCGGGCGCACTGAGCAGGAAACCGCG 77187 28 100.0 32 ............................ AGCGGCAATGATCCGCGCCCGCGATAATTTAA 77127 28 100.0 32 ............................ AGCTTCTGCGCCTGCTCCTGAGATAAGCCCAG 77067 28 100.0 32 ............................ ATAGGCGGCAAAGCGTGCGGCGGTCTGCTCGA 77007 28 100.0 32 ............................ ATACCGCTCGGCGACGAACGAGTCCGGCCAGG 76947 28 100.0 32 ............................ TTGTACTCACCATGCCACGGGCTGCCGTCCTC 76887 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76827 28 100.0 32 ............................ CGGTACGCGTACCGCGCCACCGCCGTCTTTTC 76767 28 100.0 32 ............................ AGACTGCCAGCCCCTGAATGCTGCGTTTTCAC 76707 28 100.0 32 ............................ AGGTACGCCGGACGCAGCCCCTCTGTGCCCGT 76647 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76586 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAGAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTAAAACACGCCTCGCTAACTTGTTGATTTTTTTAATAGGTTAGTGAGGCGTTGAAAAAAGAGTTTTTAAGAGGTAAGCAGCGTTTATGTTCTAGAAACAATGGGTTAAGCTGTTTTTTGCTTCA # Right flank : TCACAGCGAATTCCCTTGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCTCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 87118-85889 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJN01000007.1 Cronobacter sakazakii strain cro3113W contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87117 28 100.0 32 ............................ TCCGCGCGCACGTTTGAGCAGACGCAGCGGCA 87057 28 100.0 32 ............................ AGCGTCGCGAGCCGTCAGCGATGTTCGAGTGC 86997 28 100.0 32 ............................ GTAATGTTTGTCGATATATTCACGAAGCTTCA 86937 28 100.0 33 ............................ CGACCAGCCCGTCGATAGTGAACACCCCGCCAC 86876 28 100.0 32 ............................ AGCTCCTGCTCACACGCCGACAGGTCGTCGTA 86816 28 100.0 32 ............................ AGCAGCTATAGACAGGAGCTGTCTCGCGTACA 86756 28 100.0 32 ............................ TTTAACGATAACGGTGTACTCACCGCAATTTT 86696 28 100.0 32 ............................ GGAAAAGACAGCACTGCGACGGCTGTAATCGC 86636 28 100.0 32 ............................ AAAGTGCCCCGAACACGTAGCGCGCTGGCGAT 86576 28 100.0 32 ............................ ATCGCGCGCTGAATTTTAAAGCGCCCGTCGAA 86516 28 100.0 32 ............................ TGGATATCCAGGCGCCTGAGGGCGAGCACGCG 86456 28 100.0 32 ............................ AGAGAGCAGCATTGAAACAACGCCGTGTCTCT 86396 28 100.0 32 ............................ GTTGATACTCCCGCGCATTATCGGCATCTTTA 86336 28 100.0 32 ............................ GTTGATACTCCCGCGCATTATCGGCATCTTTA 86276 28 100.0 32 ............................ GCAGATTGCTGAGTATGAGCAAATGATGGAAG 86216 28 100.0 32 ............................ AGCTCGTCGCGGCGGTTATCAAGCGCGACCAC 86156 28 100.0 33 ............................ GTGAACGCTGATTTCTTTAGAAAGCGGGATAGT 86095 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 86035 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 85975 28 100.0 32 ............................ TGAATCCAGCCCGACACCGTTTTCTCGTCGTC 85915 27 75.0 0 ..............CT.T..AAA.-... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : TTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTACTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGCGCTAATTAGCCGATATAACGGCGATGACACGTAAGAACTACATTAACTACAGATACTTGCAGGTTTATTGCCTGTTACGGTGCGTTGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATGGCGAAGGCCTTATAAAAGTTGACATTTAGTGTTATTTATTAATAAAGCACGGGAAATGAAAGGGATATCACGGCATATTTAAAGCCTTAATAATAGACTTATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCCCTCTGATTTAAAAACGATTCTCCATTCAAAACGCGCCAATATTTATTATCTGCAATACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 151943-152511 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJN01000005.1 Cronobacter sakazakii strain cro3113W contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151943 29 100.0 32 ............................. GCGTCACTGTTCATTTTGTACAATCCGCTCGA 152004 29 100.0 32 ............................. GCAGCCGTGGCTAAAGACACTCAGCAGGCATA 152065 29 100.0 32 ............................. GCAAATGCAGTTTGCTCAACTTGGACTGAAAG 152126 29 100.0 32 ............................. ATCATTACTGTGCTATGAATGAATTCTTACCT 152187 29 96.6 32 ............................T GCAGCAAACCATAAAAAAATTAAAAATTGGGT 152248 29 100.0 32 ............................. AGATCGGCGTGCTGTTCAGGACGCTTGATACC 152309 29 100.0 32 ............................. CGCGTAGCGCTGGCTGATACGGGTAACCCGCC 152370 29 100.0 32 ............................. TTCGGACTGTAAATCGACCAGCTCAAGTTGCT 152431 29 100.0 24 ............................. GCGCGCAACAGCTTCGGCTCTCTG Deletion [152484] 152484 28 72.4 0 GC.......-...C.T.C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 31 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGCCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGTGAGCTGCGTGAAAAACTGGAAAAAATCATAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTTGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 178626-179752 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJN01000005.1 Cronobacter sakazakii strain cro3113W contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178626 29 100.0 32 ............................. AACGTTGCGGCGATTGGCATCACGCTGAACCC 178687 29 100.0 32 ............................. ATCAGCACGACTGGATTAACGGGTGGCTTGAG 178748 29 100.0 32 ............................. CCGTAGAAAACTGCACAGTCAGACTAACTGGC 178809 29 100.0 32 ............................. CAATACGAGGATGACGCAAGAGCCCTGTTTGA 178870 29 100.0 32 ............................. GTAACAGACTTACCGGCTGGGAACAGCGACAG 178931 29 100.0 32 ............................. GCCAGTGTCGGAAATAACAACGATCTTGTCGT 178992 29 100.0 32 ............................. TTCTTTTCTCCTGCCGCTGTTGACCTGGTTCA 179053 29 100.0 32 ............................. AGGCTTGTAACCAAGCCTCTTTTTATTTGATT 179114 29 100.0 32 ............................. ACACGCTGATTAACGCCTGGCCTTTGTGGGAA 179175 29 100.0 32 ............................. ATGATGGATCGTTTAGTTATCGTGGTAACATC 179236 29 100.0 32 ............................. ATTATTTTTATGCCAGCAATACGGACTATGCG 179297 29 100.0 32 ............................. TCTCTTACATTTGACGTACTGGACGCTACCGA 179358 29 100.0 32 ............................. ACGTTGTCATGAACGGCGGGTTGTATCCGGCT 179419 29 100.0 32 ............................. CTCACACTGGTTGCATTCAACGCAACATAGGA 179480 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 179541 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 179602 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 179663 29 96.6 32 ............T................ TTCTTCGACAAAGGCGGCAAGAAGAAGATCGC 179724 29 93.1 0 A...........T................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTTGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAAATTTTCTCGCGCCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGTGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTAGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //