Array 1 268893-267092 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIT01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2047 NODE_2_length_373951_cov_3.15361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 268892 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 268831 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 268770 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 268709 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 268648 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 268587 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 268526 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 268464 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 268403 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 268342 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 268281 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 268220 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 268159 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 268098 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 268037 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 267976 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 267915 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 267854 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 267793 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 267732 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 267671 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 267610 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 267549 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 267488 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 267427 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 267366 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 267305 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 267244 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 267183 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 267121 29 86.2 0 TAA.........T................ | A [267094] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 285606-285029 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIT01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2047 NODE_2_length_373951_cov_3.15361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 285605 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 285544 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 285483 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 285422 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 285361 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 285300 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 285239 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 285178 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 285117 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 285056 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //